Your message dated Mon, 28 Jan 2019 15:49:44 +0000
with message-id <e1go9ao-000cda...@fasolo.debian.org>
and subject line Bug#906811: fixed in blasr 5.3.2+dfsg-1
has caused the Debian Bug report #906811,
regarding FTBFS: libconfig.h: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
906811: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906811
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: blasr
Version: 5.3+0-2
Severity: serious
Justification: FTBFS
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
When recompiling blasr for unstable it FTBFS with:
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j1 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: git: Command not found
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -O3 -g -DSHA1_7=\"\" -std=c++0x -pedantic -Wall -We
xtra -Wno-div-by-zero -Wno-overloaded-virtual -MMD -MP -fno-builtin-malloc
-fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free
-fno-omit-frame-pointer -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq
/alignment -I/usr/include/pbseq/hdf -I/usr/include/pbseq/pbdata -I/usr/include
-I/usr/include/hdf5/serial -I/usr/include/htslib -I/usr/include/boost -c -o
Blasr.o Blasr.cpp
In file included from iblasr/BlasrMiscs.hpp:4,
from Blasr.cpp:3:
iblasr/BlasrHeaders.h:24:10: fatal error: libconfig.h: No such file or directory
#include <libconfig.h>
^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [<builtin>: Blasr.o] Error 1
Full log attached.
Thanks,
_g.
- -- System Information:
Distributor ID: PureOS
Description: PureOS GNU/Linux 8
Release: 8
Codename: green
Architecture: x86_64
Kernel: Linux 4.14.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8),
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages blasr depends on:
ii libc6 2.27-5
ii libgcc1 1:8.2.0-3
ii libhdf5-100 1.10.0-patch1+docs-4+b2
ii libhdf5-cpp-100 1.10.0-patch1+docs-4+b2
pn libhts2 <none>
pn libpbbam <none>
pn libpbseq <none>
ii libstdc++6 8.2.0-3
ii zlib1g 1:1.2.11.dfsg-1
blasr recommends no packages.
blasr suggests no packages.
-----BEGIN PGP SIGNATURE-----
iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlt8Cu8ACgkQ7+hsbH/+
z4OhTQf/bZPsdSP7SzdhPH4n7kRghAx0aH+hiRpMbwIV+KbBKrFglcVV4G6X9LJM
eAI2ovx0mk27VKLPjKFA7eYkin5j3JxEvKDrSiqwu4xk7YAtHf/4rfMIJfLs1za2
oXqaWkc7GlKhX834A+0B2kxCOnmOLLETOXAoPzJl0+TFt3Ec5uJbXQSd6QLF0iJO
LTm4zx8kl/3KXxQPZUHkQibC/B6G5vDHl2KoXNnAqQHqyDjFrFE5wglu4mUV/u0X
2kVaNezD7+o1HGqLEOTKXFT9rLH13EWoL79/Tcblr66jjJdgn36tFqHggVc74d5v
42+SK5GWyaR5yXNPH27mj1NS/RSF7g==
=0mhM
-----END PGP SIGNATURE-----
blasr_5.3+0-2_amd64-2018-08-21T11:40:43Z.build.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: blasr
Source-Version: 5.3.2+dfsg-1
We believe that the bug you reported is fixed in the latest version of
blasr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 906...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated blasr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 28 Jan 2019 16:10:36 +0100
Source: blasr
Binary: blasr
Architecture: source
Version: 5.3.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
blasr - mapping single-molecule sequencing reads
Closes: 906811
Changes:
blasr (5.3.2+dfsg-1) unstable; urgency=medium
.
* Team upload
.
[ Andreas Tille ]
* New upstream version
* Build-Depends: libpbdata-dev
Closes: #906811
* d/watch: point to Github since upstream is now tagging releases
* Point Vcs fields to salsa.debian.org
* debhelper 12
* Standards-Version: 4.3.0
* Build system switched from cmake to meson
* Versioned Build-Depends: libblasr-dev
* Cleanup d/rules
* Update manpages
* Mention tools that are not build an more in NEWS.Debian
.
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
Checksums-Sha1:
154e2e17fe2241a69bd49fd05c8d45f3f366d755 2129 blasr_5.3.2+dfsg-1.dsc
ae9dcfa2d7c480206614dde64abb78ed31033ccb 124104 blasr_5.3.2+dfsg.orig.tar.xz
f70287aebe73f7aafdda4fcb9b62e7d9bdb96671 10852 blasr_5.3.2+dfsg-1.debian.tar.xz
Checksums-Sha256:
18630b3939c79e6c29543d42382a913f159cd488c63c23693fc14302a0fd12d1 2129
blasr_5.3.2+dfsg-1.dsc
c2b899b1e77baff0ee40bb46249bbbf9e34b7fa3f54a070645407d1e2d08787b 124104
blasr_5.3.2+dfsg.orig.tar.xz
7b231d274543c12e5195a530eecb7bcd4a792e634127168811b84525a39de6b1 10852
blasr_5.3.2+dfsg-1.debian.tar.xz
Files:
ff3c062c183ebd4225cbed4e8c8a3f1c 2129 science optional blasr_5.3.2+dfsg-1.dsc
ee8e1202c33727793e22e10b4175b60d 124104 science optional
blasr_5.3.2+dfsg.orig.tar.xz
d21399ab342c47bf2b8b425ef9786f36 10852 science optional
blasr_5.3.2+dfsg-1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=YkrR
-----END PGP SIGNATURE-----
--- End Message ---
