Bug#763094: O: cl-plplot -- CFFI based interface to the PLplot scientific plotting library
Package: wnpp Severity: normal I intend to orphan the cl-plplot package. The package description is: Cl-plplot provides a CFFI based interface to the PLplot graphics library. The PLplot graphics library supports the drawing of many different types of 2D and 3D graphs using a large variety of output devices including X11, postscript and png. PLplot can also be used to make scaled drawing, or diagrams. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#763096: O: cunit -- Unit Testing Library for C
Package: wnpp Severity: normal I intend to orphan the cunit package. The package description is: CUnit is a simple framework for incorporating test cases in your C code similar to JUnit or CppUnit. It provides C programmers a basic testing functionality with a flexible variety of user interfaces. It uses a simple framework for building test structures, and provides a rich set of assertions for testing common data types. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#763099: O: wmmemload -- WindowMaker dockapp to monitor memory and swap usage
Package: wnpp Severity: normal I intend to orphan the wmmemload package. The package description is: wmmemload displays the current memory and swap usage as a percentage value. It is based on wmcpuload and wmmemmon, and as such looks very nice alongside those. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#763097: O: docbook-to-man -- converter from DocBook SGML into roff man macros
Package: wnpp Severity: normal I intend to orphan the docbook-to-man package. The package description is: docbook-to-man is a batch converter that transforms UNIX-style manpages from the DocBook SGML format into nroff/troff man macros. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724208: cl-plplot: FTBFS: Component ASDF/USER::ALEXANDRIA not found, required by #SYSTEM cffi
Hi,
in the current cl-alexandria package the 'alexandria.asd' file is
missing which might cause this bug.
Best,
Philipp
On Sun, 22 Sep 2013 19:49:29 +0200
David Suárez david.sephi...@gmail.com wrote:
Source: cl-plplot
Version: 0.6.0-4
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130922 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
Output written on cl-plplot-manual.pdf (32 pages, 158867 bytes).
Transcript written on cl-plplot-manual.log.
cd doc makeinfo --html --no-split -o cl-plplot-manual.html
cl-plplot-manual.texinfo [ Testing the cl-plplot interface... ]
echo '(load debian/test.lisp)' | sbcl --noinform
--disable-debugger Unhandled ASDF/FIND-COMPONENT:MISSING-DEPENDENCY
in thread #SB-THREAD:THREAD main thread RUNNING
{1002ADBD43}:
Component ASDF/USER::ALEXANDRIA not found, required by #SYSTEM
cffi
Backtrace for: #SB-THREAD:THREAD main thread RUNNING
{1002ADBD43} 0: ((LAMBDA NIL :IN
SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX)) 1:
(SB-IMPL::CALL-WITH-SANE-IO-SYNTAX #CLOSURE (LAMBDA NIL :IN
SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX) {10035A5F9B}) 2:
(SB-IMPL::%WITH-STANDARD-IO-SYNTAX #CLOSURE (LAMBDA NIL :IN
SB-DEBUG::FUNCALL-WITH-DEBUG-IO-SYNTAX) {10035A5F6B}) 3:
(PRINT-BACKTRACE :STREAM #SYNONYM-STREAM :SYMBOL SB-SYS:*STDERR*
{100016E573} :START 0 :FROM :INTERRUPTED-FRAME :COUNT
NIL :PRINT-THREAD T :PRINT-FRAME-SOURCE NIL :METHOD-FRAME-STYLE
NIL) 4: (SB-DEBUG::DEBUGGER-DISABLED-HOOK Component
ASDF/USER::ALEXANDRIA not found, required by #SYSTEM cffi
#unavailable argument) 5: (SB-DEBUG::RUN-HOOK
*INVOKE-DEBUGGER-HOOK* Component ASDF/USER::ALEXANDRIA not found,
required by #SYSTEM cffi) 6: (INVOKE-DEBUGGER Component
ASDF/USER::ALEXANDRIA not found, required by #SYSTEM cffi) 7:
(ERROR ASDF/FIND-COMPONENT:MISSING-DEPENDENCY :REQUIRED-BY
#ASDF/SYSTEM:SYSTEM cffi :REQUIRES ASDF/USER::ALEXANDRIA) 8:
(ASDF/FIND-COMPONENT:RESOLVE-DEPENDENCY-NAME #ASDF/SYSTEM:SYSTEM
cffi ASDF/USER::ALEXANDRIA NIL) 9: ((:METHOD
ASDF/ACTION:COMPONENT-DEPENDS-ON (ASDF/ACTION:SIDEWAY-OPERATION
ASDF/COMPONENT:COMPONENT)) #ASDF/LISP-ACTION:PREPARE-SOURCE-OP
#ASDF/SYSTEM:SYSTEM cffi) [fast-method] 10: ((:METHOD
ASDF/ACTION:COMPONENT-DEPENDS-ON (ASDF/ACTION:UPWARD-OPERATION
ASDF/COMPONENT:CHILD-COMPONENT))
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/SYSTEM:SYSTEM
cffi) [fast-method] 11: (ASDF/CACHE:CONSULT-ASDF-CACHE
(ASDF/ACTION:COMPONENT-DEPENDS-ON
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/SYSTEM:SYSTEM
cffi) #CLOSURE (LAMBDA NIL :IN
ASDF/ACTION:COMPONENT-DEPENDS-ON) {100359EFFB}) 12:
(ASDF/PLAN:MAP-DIRECT-DEPENDENCIES
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/SYSTEM:SYSTEM cffi
#CLOSURE (LAMBDA (ASDF/PLAN::DEP-O ASDF/PLAN::DEP-C) :IN
ASDF/PLAN:VISIT-DEPENDENCIES) {100359EF9B}) 13:
(ASDF/PLAN:VISIT-DEPENDENCIES #ASDF/PLAN:SEQUENTIAL-PLAN
{10034CD4A3} #ASDF/LISP-ACTION:PREPARE-SOURCE-OP
#ASDF/SYSTEM:SYSTEM cffi #CLOSURE (LAMBDA (ASDF/PLAN::O
ASDF/PLAN::C) :IN ASDF/PLAN:TRAVERSE-ACTION) {100359EF6B}) 14:
((LAMBDA NIL :IN ASDF/PLAN:TRAVERSE-ACTION)) 15: ((:METHOD
ASDF/PLAN:CALL-WHILE-VISITING-ACTION (ASDF/PLAN:PLAN-TRAVERSAL T T
T)) #ASDF/PLAN:SEQUENTIAL-PLAN {10034CD4A3}
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/SYSTEM:SYSTEM cffi
#CLOSURE (LAMBDA NIL :IN ASDF/PLAN:TRAVERSE-ACTION) {100359EF0B})
[fast-method] 16: ((LAMBDA (ASDF/PLAN::DEP-O ASDF/PLAN::DEP-C) :IN
ASDF/PLAN:VISIT-DEPENDENCIES) #ASDF/LISP-ACTION:PREPARE-SOURCE-OP
#ASDF/SYSTEM:SYSTEM cffi) 17:
(ASDF/PLAN:MAP-DIRECT-DEPENDENCIES
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/COMPONENT:MODULE
cffi src #CLOSURE (LAMBDA (ASDF/PLAN::DEP-O
ASDF/PLAN::DEP-C) :IN ASDF/PLAN:VISIT-DEPENDENCIES)
{100359EB6B}) 18: (ASDF/PLAN:VISIT-DEPENDENCIES
#ASDF/PLAN:SEQUENTIAL-PLAN {10034CD4A3}
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/COMPONENT:MODULE
cffi src #CLOSURE (LAMBDA (ASDF/PLAN::O ASDF/PLAN::C) :IN
ASDF/PLAN:TRAVERSE-ACTION) {100359EB3B}) 19: ((LAMBDA NIL :IN
ASDF/PLAN:TRAVERSE-ACTION)) 20: ((:METHOD
ASDF/PLAN:CALL-WHILE-VISITING-ACTION (ASDF/PLAN:PLAN-TRAVERSAL T
T T)) #ASDF/PLAN:SEQUENTIAL-PLAN {10034CD4A3}
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/COMPONENT:MODULE
cffi src #CLOSURE (LAMBDA NIL :IN
ASDF/PLAN:TRAVERSE-ACTION) {100359EADB}) [fast-method] 21:
((LAMBDA (ASDF/PLAN::DEP-O ASDF/PLAN::DEP-C) :IN
ASDF/PLAN:VISIT-DEPENDENCIES)
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP #ASDF/COMPONENT:MODULE
cffi src) 22: (ASDF/PLAN:MAP-DIRECT-DEPENDENCIES
#ASDF/LISP-ACTION:PREPARE-SOURCE-OP
#ASDF/LISP-ACTION:CL-SOURCE-FILE cffi src cffi-sbcl
#CLOSURE (LAMBDA (ASDF/PLAN::DEP-O ASDF/PLAN::DEP-C) :IN
ASDF/PLAN:VISIT-DEPENDENCIES) {100359E34B}) 23:
(ASDF/PLAN:VISIT-DEPENDENCIES
Bug#549233: Bug still present, further information needed?
Hi, I'm currently not working on this bug, which is why the package is up for adoption. Regards, Philipp -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#573942: Bug 573942
The library in libtacacs+1-dev does not provide any functionality of regexp.c. It is merely used for tac_plus. So the manpage should be removed from that package. The same is true for docbook-to-man, so we should both remove that file. Regards, Philipp -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#560963: cl-cffi: Loading cffi fails
Package: cl-cffi
Version: 20090823-2
Justification: renders package unusable
Severity: grave
* (asdf:operate 'asdf:load-op 'cffi)
debugger invoked on a ASDF:MISSING-COMPONENT in thread #THREAD
initial thread RUNNING {AB16701}:
component cffi not found
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 2.6.25.4dedibox-r9-smp-x32
Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages cl-cffi depends on:
ii cl-alexandria 0.0.20091101-1 A collection of portable
Common Li
ii cl-babel0.3.0+20090601-2 A charset encoding/
decoding librar
ii cl-trivial-features 0.6-1An abstraction layer for
the *feat
ii common-lisp-controller 6.20 Common Lisp source and
compiler ma
cl-cffi recommends no packages.
cl-cffi suggests no packages.
-- no debconf information
--
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Bug#560966: cl-cffi: Add a test script to the package
Package: cl-cffi Version: 20090823-2 Severity: wishlist Please add some test script to the package that loads and tests cffi during build time. This would prevent bugs like #549264, #519796, and #560963. (See cl-plplot for an example) -- System Information: Debian Release: squeeze/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: i386 (i686) Kernel: Linux 2.6.25.4dedibox-r9-smp-x32 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages cl-cffi depends on: ii cl-alexandria 0.0.20091101-1 A collection of portable Common Li ii cl-babel0.3.0+20090601-2 A charset encoding/ decoding librar ii cl-trivial-features 0.6-1An abstraction layer for the *feat ii common-lisp-controller 6.20 Common Lisp source and compiler ma cl-cffi recommends no packages. cl-cffi suggests no packages. -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#518744: cl-plplot: FTBFS: unhandled condition in --disable-debugger mode,, quitting
Hey, #549264 is actually not fixed. cl-babel was rejected [1]. I'll have to wait until the package gets into debian. Cheers, Philipp [1] http://lists.alioth.debian.org/pipermail/pkg-common-lisp-devel/2009-November/001786.html -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#549475: RFA: docbook-to-man
Package: wnpp Severity: normal I'm currently too busy to maintain docbook-to-man. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#549264: cl-cffi: cffi depends on babel which is not part of debian
Package: cl-cffi
Version: 20090823-1
Severity: grave
Justification: renders package unusable
* (asdf:operate 'asdf:load-source-op :cffi)
; loading system definition from /usr/share/common-lisp/systems/
cffi.asd into
; #PACKAGE ASDF0
; registering #SYSTEM CFFI {AC05259} as CFFI
; loading system definition from /usr/share/common-lisp/systems/
babel.asd into
; #PACKAGE ASDF0
debugger invoked on a SB-INT:SIMPLE-FILE-ERROR in thread #THREAD
initial thread RUNNING {AA6B711}:
Couldn't load #P/usr/share/common-lisp/systems/babel.asd: file
does not
exist.
-- System Information:
Debian Release: squeeze/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: i386 (i686)
Kernel: Linux 2.6.25.4dedibox-r9-smp-x32
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/bash
Versions of packages cl-cffi depends on:
ii common-lisp-controller6.18 Common Lisp source and
compiler ma
cl-cffi recommends no packages.
cl-cffi suggests no packages.
-- no debconf information
--
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with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#528271: debian-maintainers: Annual ping for Philipp Benner
Package: debian-maintainers Version: 1.58 Severity: normal Hi, I'm still working on cl-plplot, cunit, docbook-to-man, mcl, prolog-el, python-biopython, wise, and wmmemload. Regards, Philipp PGP.sig Description: This is a digitally signed message part
Bug#519796: fixed in cffi 0.10.4
It seems that sbcl 1.0.25 requires a more recent cffi version. I tested it with cffi 0.10.4 without getting package lock errors. Regards, Philipp -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#493624: zoem: segmentation fault during translation to html
Hi Tobias,
thanks for your bug report. However, I was unable to reproduce that behaviour
with the file you've attached. In the .azm source, another file (mcx.zmm) is
included, which I downloaded from the mcx source tarball
(http://micans.org/mcl/src/mcl-08-157.tar.gz). Did you use that version as
well?
Yes, right.
Could you also run the following command:
$ strace zoem -d html -i mcxconvert.azm -o mcxconvert.html
and send the output to this bug report?
Done.
Could it be an arch specific problem? Since I'm using powerpc.
Cheers,
--
Philipp Benner
execve(/usr/bin/zoem, [zoem, -d, html, -i, mcxconvert.azm, -o,
mcxconvert.html], [/* 29 vars */]) = 0
brk(0) = 0x804a000
access(/etc/ld.so.nohwcap, F_OK) = -1 ENOENT (No such file or directory)
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x3001f000
mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) =
0x3002
access(/etc/ld.so.preload, R_OK) = -1 ENOENT (No such file or directory)
open(/home/philipp/usr/lib/tls/ppc7450/altivec/libm.so.6, O_RDONLY) = -1
ENOENT (No such file or directory)
stat64(/home/philipp/usr/lib/tls/ppc7450/altivec, 0x7fdaedd8) = -1 ENOENT (No
such file or directory)
open(/home/philipp/usr/lib/tls/ppc7450/libm.so.6, O_RDONLY) = -1 ENOENT (No
such file or directory)
stat64(/home/philipp/usr/lib/tls/ppc7450, 0x7fdaedd8) = -1 ENOENT (No such
file or directory)
open(/home/philipp/usr/lib/tls/altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No
such file or directory)
stat64(/home/philipp/usr/lib/tls/altivec, 0x7fdaedd8) = -1 ENOENT (No such
file or directory)
open(/home/philipp/usr/lib/tls/libm.so.6, O_RDONLY) = -1 ENOENT (No such file
or directory)
stat64(/home/philipp/usr/lib/tls, 0x7fdaedd8) = -1 ENOENT (No such file or
directory)
open(/home/philipp/usr/lib/ppc7450/altivec/libm.so.6, O_RDONLY) = -1 ENOENT
(No such file or directory)
stat64(/home/philipp/usr/lib/ppc7450/altivec, 0x7fdaedd8) = -1 ENOENT (No
such file or directory)
open(/home/philipp/usr/lib/ppc7450/libm.so.6, O_RDONLY) = -1 ENOENT (No such
file or directory)
stat64(/home/philipp/usr/lib/ppc7450, 0x7fdaedd8) = -1 ENOENT (No such file
or directory)
open(/home/philipp/usr/lib/altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No such
file or directory)
stat64(/home/philipp/usr/lib/altivec, 0x7fdaedd8) = -1 ENOENT (No such file
or directory)
open(/home/philipp/usr/lib/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
stat64(/home/philipp/usr/lib, {st_mode=S_IFDIR|0755, st_size=952, ...}) = 0
open(tls/ppc7450/altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
open(tls/ppc7450/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(tls/altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(tls/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(ppc7450/altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
open(ppc7450/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(altivec/libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(libm.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(/etc/ld.so.cache, O_RDONLY) = 6
fstat64(6, {st_mode=S_IFREG|0644, st_size=131476, ...}) = 0
mmap(NULL, 131476, PROT_READ, MAP_PRIVATE, 6, 0) = 0x30031000
close(6)= 0
access(/etc/ld.so.nohwcap, F_OK) = -1 ENOENT (No such file or directory)
open(/lib/libm.so.6, O_RDONLY)= 6
read(6, \177ELF\1\2\1\0\0\0\0\0\0\0\0\0\0\3\0\24\0\0\0\1\0\0\313..., 512) =
512
fstat64(6, {st_mode=S_IFREG|0644, st_size=706940, ...}) = 0
mmap(0x7f33000, 770764, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 6, 0) =
0x7f33000
mprotect(0x7fdc000, 65536, PROT_NONE) = 0
mmap(0x7fec000, 16384, PROT_READ|PROT_WRITE,
MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 6, 0xa9000) = 0x7fec000
close(6)= 0
open(/home/philipp/usr/lib/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
open(tls/ppc7450/altivec/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
open(tls/ppc7450/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(tls/altivec/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(tls/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(ppc7450/altivec/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or
directory)
open(ppc7450/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(altivec/libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
open(libc.so.6, O_RDONLY) = -1 ENOENT (No such file or directory)
access(/etc/ld.so.nohwcap, F_OK) = -1 ENOENT (No such file or directory)
open(/lib/libc.so.6, O_RDONLY)= 6
read(6, \177ELF\1\2\1\0\0\0\0\0\0\0\0\0\0\3\0\24\0\0\0\1\0\1\351..., 512) =
512
fstat64(6, {st_mode=S_IFREG|0755, st_size=1458348, ...}) = 0
mmap(0x7dad000, 1528376
Bug#493624: zoem: segmentation fault during translation to html
Package: zoem
Version: 07-333-3
Severity: important
$ zoem -d html -i mcxconvert.azm -o mcxconvert.html
zsh: segmentation fault zoem -d html -i mcxconvert.azm -o mcxconvert.html
The mcxconvert.azm file is attached to this mail.
Cheers!
-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable')
Architecture: powerpc (ppc)
Kernel: Linux 2.6.18
Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages zoem depends on:
ii libc6 2.7-10 GNU C Library: Shared libraries
zoem recommends no packages.
Versions of packages zoem suggests:
pn zoem-doc none (no description available)
-- no debconf information
--
Philipp Benner
\def{man::synstyle}{long}
\def{man::defstyle}{long}
\import{mcx.zmm}
\set{man::name}{mcx convert}
\set{man::html-title}{The mcx convert manual}
\set{man::author}{Stijn van Dongen}
\set{man::section}{1}
\man::preamble
\${html}{\man::maketoc}
\sec{name}{NAME}
\NAME{mcxconvert}{convert between mcx storage types}
\sec{synopsis}{SYNOPSIS}
\par{
\mcx{convert} matrix-file-in matrix-file-out\|
\mcx{convert} [--write-binary] --cone-to-stack cat-file-in cat-file-out\|
\mcx{convert} [--write-binary] --stack-to-cone cat-file-in cat-file-out
}
\disclaim_mcx{convert}
\par{
\mcx{convert}
\synoptopt{--cone-to-stack}{transform cone file to stack file}
\synoptopt{--stack-to-cone}{transform stack file to cone file}
\synoptopt{--write-binary}{output native binary format}
\synoptopt{--cat}{read and write cat format}
\synoptopt{-cat-max}{num}{limit the stack conversion to num matrices}
}
\par{
In the two-argument invocation without additional arguments, \mcx{convert}
converts from the format found in the first file to the other format, i.e.
from native interchange to native binary format or the other way around.
When
querying with the \genopt{-q} option, mcx{convert} will output a one-line
synopsis describing the matrix in the argument. The
\genopt{--cone-to-stack} and \genopt{--stack-to-cone} options convert
between the two types of concatenated output provided by \mclcm.
}
\sec{description}{DESCRIPTION}
\par{
The \mcl libraries make extensive use of matrices. Matrices
are used to encode graphs, matrices and clusterings.
They can be stored either in interchange or in binary format. The latter is
somewhat more efficient in storage and much faster in both reading and
writing, but the default is interchange format.
}
\par{
The \mcl input routines recognize the type of storage they are dealing
with. If you want to convert a matrix to the other storage type,
simply specify the file name of the matrix you want to convert.
\mcx{convert} will recognize its type, and write the other type
to the file specified as the second argument.
}
\sec{options}{OPTIONS}
\'begin{itemize}{\mcx_itemopts}
\item{\defopt{--cone-to-stack}{transform cone file to stack file}}
\car{
This option requires two trailing options, the names of respectively the
source cone file and the target stack file.}
\item{\defopt{--stack-to-cone}{transform stack file to cone file}}
\car{
This option requires two trailing options, the names of respectively the
source stack file and the target cone file.}
\item{\defopt{--cat}{read and write cat format}}
\item{\defopt{-cat-max}{num}{limit the stack conversion to num matrices}}
\item{\defopt{--write-binary}{output native binary format}}
\car{
This option is only useful with either of the options
\genoptref{--cone-to-stack},
\genoptref{--stack-to-cone}, or \genoptref{--cat}.
}
\'end{itemize}
\sec{author}{AUTHOR}
\par{
Stijn van Dongen.
}
\sec{seealso}{SEE ALSO}
\par{
\mysib{mcxio},
and \mysib{mclfamily} for an overview of all the documentation
and the utilities in the mcl family.
}
\man::postamble
Bug#486240: git-import-orig: fails if package version uses epochs
Package: git-buildpackage Version: 0.4.29 Severity: normal $ git-import-orig ../mcl_08-157.orig.tar.gz Upstream version is 08-157 Importing '../mcl_08-157.orig.tar.gz' to branch 'upstream'... Switched to branch upstream [...] dch: fatal error at line 947: New version specified (08-157-1) is less than the current version number (1:06-058-2)! Use -b to force. dch returned 25 Dch failed. Import of ../mcl_08-157.orig.tar.gz failed -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages git-buildpackage depends on: ii devscripts 2.10.28 scripts to make the life of a Debi ii git-core 1:1.5.5.1-1 fast, scalable, distributed revisi ii python 2.5.2-1 An interactive high-level object-o ii python-dateutil 1.4-1 powerful extensions to the standar ii python-support 0.7.7 automated rebuilding support for P git-buildpackage recommends no packages. -- no debconf information -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#479889: qstardict: FTBFS: keyboard.cpp:25:24: error: X11/XKBlib.h: No such file or directory
Tags: +patch The package just misses the build dependency on libx11-dev. -- Philipp Benner diff -aruN qstardict-0.12.7.old/debian/control qstardict-0.12.7/debian/control --- qstardict-0.12.7.old/debian/control 2008-06-09 13:19:30.0 +0200 +++ qstardict-0.12.7/debian/control 2008-06-09 13:25:46.0 +0200 @@ -2,7 +2,7 @@ Section: x11 Priority: optional Maintainer: Alexander Rodin [EMAIL PROTECTED] -Build-Depends: debhelper (= 5), libqt4-dev (= 4.2.0), libglib2.0-dev, zlib1g-dev +Build-Depends: debhelper (= 5), libqt4-dev (= 4.2.0), libglib2.0-dev, zlib1g-dev, libx11-dev Standards-Version: 3.7.3 Homepage: http://qstardict.ylsoftware.com
Bug#479979: umview: FTBFS: um_mmap.c:31:22: error: asm/page.h: No such file or directory
Tags: +patch The include can just be removed. -- Philipp Benner diff -aruN umview-0.4a.old/um-viewos/um_mmap.c umview-0.4a/um-viewos/um_mmap.c --- umview-0.4a.old/um-viewos/um_mmap.c 2007-01-18 13:21:05.0 +0100 +++ umview-0.4a/um-viewos/um_mmap.c 2008-06-09 14:28:22.0 +0200 @@ -28,7 +28,6 @@ #include stdlib.h #include sys/types.h #include sys/mman.h -#include asm/page.h #include linux/unistd.h #include config.h #include defs.h
Bug#485482: ITP: yars -- Yet Another Robot Simulator
Package: wnpp Severity: wishlist Owner: Philipp Benner [EMAIL PROTECTED] * Package name: yars Version : 0.0.1 Upstream Author : Keyan Zahedi * URL : http://yars.sourceforge.net/wiki/Main_Page * License : GPL Programming Lang: C++ Description : Yet Another Robot Simulator Yars provides a simplified interface to the open dynamics library (ODE) specialised for the simulation of autonomous vehicles or walking machines. The morphology of robots is described using XML files. The purpose of the simulator is mainly the development of control strategies for autonomous robots. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#480364: FTBFS: Missing asm/page.h
Did you only compile it or did you actually check it? Or are there any references? If I get a confirmation that it works, I can try to do a QA upload. For this file it works, tested it on alpha. However, there are some other issues (updated the patch). One I could't fix (yet): $ gcc -g -O2 -Wall -g -I/root/aboot-1.0~pre20040408/include -D__KERNEL__ -mcpu=ev4 -Os -Wall -fno-builtin -Wcast-align -mno-fp-regs -ffixed-8 -fno-builtin-printf -g -O2 -Wall -I. -I../include -I/root/aboot-1.0~pre20040408/include -I/root/aboot-1.0~pre20040408/include objstrip.c -o objstrip objstrip.c:30:22: error: asm/elf.h: No such file or directory objstrip.c: In function ‘main’: objstrip.c:153: warning: cast increases required alignment of target type objstrip.c:155: warning: pointer targets in passing argument 1 of ‘strncmp’ differ in signedness objstrip.c:161: warning: implicit declaration of function ‘elf_check_arch’ objstrip.c:180: warning: cast increases required alignment of target type objstrip.c:202: warning: type-punning to incomplete type might break strict-aliasing rules objstrip.c:204: error: dereferencing pointer to incomplete type objstrip.c:210: error: dereferencing pointer to incomplete type objstrip.c:210: error: dereferencing pointer to incomplete type objstrip.c:216: warning: implicit declaration of function ‘N_MAGIC’ objstrip.c:216: error: dereferencing pointer to incomplete type objstrip.c:216: error: ‘OMAGIC’ undeclared (first use in this function) objstrip.c:216: error: (Each undeclared identifier is reported only once objstrip.c:216: error: for each function it appears in.) objstrip.c:221: warning: implicit declaration of function ‘N_TXTOFF’ objstrip.c:221: error: dereferencing pointer to incomplete type objstrip.c:222: error: dereferencing pointer to incomplete type objstrip.c:222: error: dereferencing pointer to incomplete type objstrip.c:223: error: dereferencing pointer to incomplete type objstrip.c:227: error: dereferencing pointer to incomplete type objstrip.c:228: error: dereferencing pointer to incomplete type -- Philipp Benner diff -aruN aboot-1.0~pre20040408.old/zip/misc.c aboot-1.0~pre20040408/zip/misc.c --- aboot-1.0~pre20040408.old/zip/misc.c 2001-10-09 01:03:54.0 +0200 +++ aboot-1.0~pre20040408/zip/misc.c 2008-05-29 14:22:36.0 +0200 @@ -11,8 +11,6 @@ */ #include linux/kernel.h -#include asm/page.h - #include aboot.h #include bootfs.h #include setjmp.h --- aboot-1.0~pre20040408.orig/disk.c +++ aboot-1.0~pre20040408/disk.c @@ -35,8 +35,8 @@ #include linux/elf.h #include asm/console.h -#include asm/system.h -#include asm/elf.h +#include system.h +//#include asm/elf.h extern struct bootfs ext2fs; extern struct bootfs iso;
Bug#480364: FTBFS: Missing asm/page.h
Tags: patch The include can be savely removed. -- Philipp Benner diff -aruN aboot-1.0~pre20040408.old/zip/misc.c aboot-1.0~pre20040408/zip/misc.c --- aboot-1.0~pre20040408.old/zip/misc.c 2001-10-09 01:03:54.0 +0200 +++ aboot-1.0~pre20040408/zip/misc.c 2008-05-29 14:22:36.0 +0200 @@ -11,8 +11,6 @@ */ #include linux/kernel.h -#include asm/page.h - #include aboot.h #include bootfs.h #include setjmp.h
Bug#458717: fix for 458717
Hi,
the attached patch should fix this problem.
Regards,
--
Philipp Benner
--- a/debian/rules
+++ b/debian/rules
@@ -1,6 +1,12 @@
#!/usr/bin/make -f
-DEBUG ?= 0
+ifneq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+ BITLBEE_CONFFLAGS += --strip=0 --debug=1
+endif
+
+ifneq (,$(findstring parallel,$(DEB_BUILD_OPTIONS)))
+ BITLBEE_MAKEFLAGS += -j$(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
+endif
ifeq (,$(wildcard /usr/bin/po2debconf))
PO2DEBCONF := no
@@ -14,8 +20,8 @@ endif
build-arch: build-arch-stamp
build-arch-stamp:
if [ ! -d debian ]; then exit 1; fi
- ./configure --debug=$(DEBUG) --prefix=/usr --etcdir=/etc/bitlbee $(DEB_BUILD_OPTIONS)
- $(MAKE)
+ ./configure --prefix=/usr --etcdir=/etc/bitlbee $(BITLBEE_CONFFLAGS)
+ $(MAKE) $(BITLBEE_MAKEFLAGS)
touch build-arch-stamp
build-indep: build-indep-stamp
@@ -54,20 +60,22 @@ binary-arch: build-arch install-arch
cd debian/bitlbee/usr/share/; \
gzip -9 doc/bitlbee/changelog.Debian doc/bitlbee/changelog doc/bitlbee/user-guide.txt \
doc/bitlbee/examples/* man/man8/bitlbee.8 man/man5/bitlbee.conf.5
-
+
chown -R root.root debian/bitlbee/
find debian/bitlbee/usr/share/ -type d -exec chmod 755 {} \;
find debian/bitlbee/usr/share/ -type f -exec chmod 644 {} \;
-
+
cp debian/bitlbee.preinst debian/bitlbee/DEBIAN/preinst
cp debian/bitlbee.postinst debian/bitlbee/DEBIAN/postinst
cp debian/bitlbee.postrm debian/bitlbee/DEBIAN/postrm
cp debian/bitlbee.config debian/bitlbee/DEBIAN/config
cp debian/bitlbee.conffiles debian/bitlbee/DEBIAN/conffiles
-
+
po2debconf debian/bitlbee.templates debian/bitlbee/DEBIAN/templates
-
- if [ $(DEBUG) = 0 ]; then strip -R .comment -R .note debian/bitlbee/usr/sbin/bitlbee; fi
+
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+ strip -R .comment -R .note debian/bitlbee/usr/sbin/bitlbee
+endif
cd debian/bitlbee; \
find usr -type f -exec md5sum {} \; DEBIAN/md5sums
@@ -81,7 +89,7 @@ endif
dpkg --build debian/bitlbee ..
debug-build:
- BITLBEE_VERSION=\`date +%Y%m%d`-`hostname`-debug\ debian/rules clean binary DEBUG=1
+ BITLBEE_VERSION=\`date +%Y%m%d`-`hostname`-debug\ debian/rules clean binary DEB_BUILD_OPTIONS=$(DEB_BUILD_OPTIONS) nostrip
binary: binary-arch
build: build-arch
signature.asc
Description: Digital signature
Bug#461402: ITP: cl-unification -- Unification framework for common lisp
Package: wnpp Severity: wishlist Owner: Philipp Benner [EMAIL PROTECTED] * Package name: cl-unification Upstream Author : Marco Antoniotti [EMAIL PROTECTED] * URL : http://common-lisp.net/project/cl-unification/ * License : BSD Programming Lang: Lisp Description : Unification framework for common lisp The library provides a full blown unification framework for Common Lisp. The notion of unification originated in the field of formal logic and has been used extensively in Computer Science and Programming Languages. Most notably, Prolog uses the full power of unification. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#461234: ITP: kml -- C++ Kernel Machine Library
Package: wnpp Severity: wishlist Owner: Philipp Benner [EMAIL PROTECTED] * Package name: kml Version : r285 Upstream Author : Rutger ter Borg [EMAIL PROTECTED] * URL : http://www.terborg.net/research/kml/ * License : LGPL Programming Lang: C++ Description : C++ Kernel Machine Library The Kernel-Machine Library is a free (released under the LGPL) C++ library to promote the use of and progress of kernel machines. It is intended for use in research as well as in practice. The library is known to work with a recent C++ compiler on GNU/Linux, on Mac OS, and on several flavours of Windows. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#460693: debian-maintainers: DM application for Philipp Benner
Package: debian-maintainers Version: 1.15 Severity: normal Attached is the changeset for my application. Kind regards, -- Philipp Benner signature.asc Description: Digital signature
Bug#460693: debian-maintainers: DM application for Philipp Benner
Second try... -- Philipp Benner Changed-By: Date: Mon, 14 Jan 2008 14:27:14 +0100 Comment: adding Philipp Benner to the keyring NM-Page: https://nm.debian.org/[EMAIL PROTECTED] Agreement: http://lists.debian.org/debian-newmaint/2007/12/msg00052.html Advocates: tille - http://lists.debian.org/debian-newmaint/2007/12/msg00053.html costela - http://lists.debian.org/debian-newmaint/2007/12/msg00055.html moeller - http://lists.debian.org/debian-newmaint/2008/01/msg00056.html Action: import Data: -BEGIN PGP PUBLIC KEY BLOCK- Version: GnuPG v1.4.6 (GNU/Linux) mQGiBEAmhYgRBACjUm/d2jl52GQoCtv0iOTd4XY9qLopav/lbU+uesDvTtXtCUlr WcGjRHV6olCepdNcR2pFOh4/a9+bXkXDC/Do8PG1LZZ0EnNr8Vb6BYwedpKME1Pt LAUJgcyIp9z5nWA9S/ZMrf7j+WMEjE+vrOo1pfa+8HvmHNyLF76pryWH1wCgoEyn 7wRyRgGrHyu62Azr5/KbhNUD/jaNDw1ULfWZLmT4/5fhbONHvERn22909VohRmZZ Lqm4a5lsbT4Di/5FY+MkjP+1nqMNkHClEnEMs/+cZG3+lqpMqDXik1LF9tL5PCyl GMhn/Nx0TS74ejC9nu47RnypMZVY418jkQmhDlxSvBDM5prREw3xPk+Fa3IKv806 tNR6A/4ivzFWvse2ovp4UH3D9lHFHrOVNl/+8NQok4B+KC+vXLiH+034slel7TAh FCdcQS//VJhudZkNTnGieeouS9pjWQrDLydK0fDS5AhUMXYVHjjJLxWIwGyLIE7a zD+FF5DIRdLRaeFTEWSfVmoHCWQGtFz2I4FVIMElp7U8hI6s3bQiUGhpbGlwcCBC ZW5uZXIgPHBiZW5uZXJAY29nc2NpLmV1PohjBBMRAgAjAhsDBgsJCAcDAgQVAggD BBYCAwECHgECF4AFAkUrzpwCGQEACgkQqVw77OuI6TAbrgCdEZQThUy6mkOY4lSc C/DQYZdKw8kAn3hTiBVyyN8cFqAl28prtOOBOw76tCpQaGlsaXBwIEJlbm5lciA8 cGJlbm5lckB1bmktb3NuYWJydWVjay5kZT6IcQQTEQIAMQIbAwYLCQgHAwIDFQID AxYCAQIeAQIXgBIYaGtwOi8vcGdwLm1pdC5lZHUFAkUrzpwACgkQqVw77OuI6TDA HgCcCBTdDqAlp7s/E7V5Dx38q8B/tKwAnAo8pY8KgjNJJiIVKadcVO/mlEiyiF4E ExECAB4FAkNJAUcCGwMGCwkIBwMCAxUCAwMWAgECHgECF4AACgkQqVw77OuI6TBN vQCghqORJuFJUCAF2LhSJBAUiKybelMAn18UEmgRFYEHHLkVxCOtRX49KCMciHQE ExECADQCGwMGCwkIBwMCAxUCAwMWAgECHgECF4ACGQEFAkT7EmsSGGhrcDovL3Bn cC5taXQuZWR1AAoJEKlcO+zriOkwALQAn0OIyRGFhbOv9lhGPNHSzarKkDc0AJ9a J3K9ocK+KsqxoigJPCX18RDqprQiUGhpbGlwcCBCZW5uZXIgPHBiZW5uZXJAZW1s aXguY29tPohJBDARAgAJBQJE1cEsAh0gAAoJEKlcO+zriOkwHZYAnRFituSGbBwy Oa1E5RPtaT1CSsNoAJwNgZe6stkqlk6MuzAmbjOmYTrvC4hgBBMRAgAgBQJD+3Xw AhsDBgsJCAcDAgQVAggDBBYCAwECHgECF4AACgkQqVw77OuI6TDsTQCfbDeKJFVc fYZ0wzHQFohR7zG6qRkAmwXqroJ43oYWSTJ+XbQ211UpI1kmtB1QaGlsaXBwIEJl bm5lciA8cGJAZW1saXguY29tPohJBDARAgAJBQJD+3XIAh0gAAoJEKlcO+zriOkw o/oAn0KDDTeW+BPsxC4jcYahJ39543+yAJ9Qyykc2U+0wgaPwVdlAmuNntZJr4he BBMRAgAeBQJCUZ5JAhsDBgsJCAcDAgMVAgMDFgIBAh4BAheAAAoJEKlcO+zriOkw qQMAoKAq8FvKz1hlWAh1xr/oyvskwRGlAKCToHP2DMgnr8sGgruPltrFZoL48IhG BBMRAgAGBQJCX5LNAAoJECxw4sZEMXOcX84An1CkR91PxzEtXmqAqynF+norqoca AJ9x0HQcUYSKnTsLX4nZ5KB0Mf3l4YhGBBMRAgAGBQJCYl9TAAoJEAwdrmvP2Yu4 wM8An3zAVNiiSJG5N+wKpqnB5bM37C7MAJ9z2rGfP5HR/LNv64iB2EjMKAZj8IhG BBMRAgAGBQJCYnClAAoJEBleN2MWY+uk33cAnjVuKkS9DrbmzmcFfai3saFAEs74 AJ9On6ygcWgK9nZMpRzieFe+AHPU0bQnUGhpbGlwcCBCZW5uZXIgPG1haWxAcGhp bGlwcC1iZW5uZXIuZGU+iG4EExECAC4GCwkIBwMCAxUCAwMWAgECHgECF4AFAkT7 EpoSGGhrcDovL3BncC5taXQuZWR1AAoJEKlcO+zriOkwq+oAoIAYoYel/AGB4eHd jaqJXal+orvpAJ4zA3i0Xyw8+8JjAPc7kUSMD8u0K4hGBBMRAgAGBQJBIFgbAAoJ EGAwWzHAn9NaFeUAoK6LfZ06671Z/wVquM27xDYip2CxAJ9TYKokVFo+OZ7eGUrr CR1h4bqO0YhGBBIRAgAGBQJBUEkFAAoJEAwdrmvP2Yu4U5kAn1qHxeZjfi7UrCab qcKdEDkqcnaqAKCj+T3M/jvzfsZzQ3xExe6D4yDHcokBIgQQAQIADAUCQg4iDQUD ABJ1AAAKCRCXELibyletfMdFB/0c3HR8JgB8YU41ACQJXyitdTLZKUShwGF2ozPj snxXuyS/Yie5FVZEtdqxTBESD/xXf9QFx+gsNTS4lQKUjmnlqZlhv3naIqEZeQ9I FrKzl6AKCyNwvsZkuIuj4W0NPnFm6lIfbc5eO3n8tDwadY7l6FdAmOJ54XFdWT9O h109ioFN1NZQsUiHS1+aRlz+a7OiGdXEtDdgT9mmJT4GNQN7xMFh1Scwxrs/DrOs m93NoaMNU7YV0H4Tc9ljtcPKHv/RrIkJJDBEl54MmuxYhFAeDhPnn6Vnv6dz0t34 RNURVfmnKKYnXbVz8cs3t3KMeEUKiLgU74ttcUd0jvQv26/kiQEiBBABAgAMBQJC Fq6nBQMAEnUAAAoJEJcQuJvKV618UhQH/11lnEvNUjAzdF2TYEHzhqp1af0/rc1p pX4OGqIc4FfnF4/Gm+XH+Gfc0p8Q1hMhhRuuoz4x4sGA3W6PhTnkBDLFzEboaP80 HT7w0Ahc20zK4mBAu6Xgoqij+/AYDq/2XNoyQuFFMEeHDunn+aiU6kVlQm6WOIBp eR3vi2FXwETN9UgQ50O3ZyTfIBrtqie55oPBLbdRng5jIm83XGXG/tKgfXHSG6bM rzEWdA+/YxzRhc9PRucRvh+7vD8mYxNuRY2P0k4yZWvrOP/n5oj8Dt5xM+NiauGZ 6Z/dSA+eDkdVL5gNRqXCdTMiDCFqQwN1wm6IYN/TkfBHcBd/sZLCz6uJASIEEAEC AAwFAkIpco4FAwASdQAACgkQlxC4m8pXrXygmAf9EvirLwBzYyHQV2T5x3HzFVxY bEcTRBL2vrNb4jG3Ee5B4CJVMx1D0tNOuT4QE1xnSQZO6TdRum5hnu3snUQMBVg6 RrfAbYY/PoxHgUbdACeD5KFXMhfvzw1nnyHlehE5VlH12NTTAsL7Qaeia27xzMRU 5S8+0Bf0noaotmu45gbYzD3ys0GQdtnFuvofArD3jylEkoCuiuVsDdZFxNdj9AcC Tqc05l1yLR8Nm2k4uFOH0Yvmk1QvYgIafLYYPN7qKgbK9DJa+bONI+ydkuZFT2B0 wzCk4O2Zk/P7XZTuvodGb0QOKlBRRVxyUggL3idzl3PH1B0gL23AyN6IhedxoYkB IgQQAQIADAUCQj1MiAUDABJ1AAAKCRCXELibyletfM6HCACTNw14FYRZmZjGASKp mNjTW2mQTjaINIaR6DBF7RY1TN0Erq1v1UTtq3X0BF1QBRAMzqPM9TS6i4C7UYn+ xJWjGAZZJnsVujr5UnoWztILiIDXuv/2wc8nXfwQ/y0fd5+StcRadCAVNMsll1Fo SA+llU/2cZSUCxcms+SlEI6f80SE3pW9iHzSWlVMtWbPu+Uf5znI2J1/4z5nnyai lobKOYGx5mIaoKYrejC9vxTnBFNiZv9X28v9JYq/El1K0bOSPifgoCtokInJKuVP eGfvK07Iflv2wzDAWDozRxx/+Ad2jwvXTO0kI9X1sikjsV6KlLViJbkHixfGEt0h cmU3iQEiBBABAgAMBQJCT8OfBQMAEnUAAAoJEJcQuJvKV618Xk4IAKeHS76s10+z Lc61ai2i2NKZMAO5g3GnHnPWjbzMb3AHvC5dyTg2Wq7UE3Ll6W2rbMrTwEUSH8s+ FVdGslGqLkd5w4cLhquluC3XL5zi9+379+S5mFh
Bug#460693: [D-m-team] Bug#460693: debian-maintainers: DM application for Philipp Benner
On Mon, Jan 14, 2008 at 03:04:09PM -0500, Joey Hess wrote: I don't see any signature from a DD on your key, which is a requirement for DM. Andreas signed my key: $ gpg --list-sigs [EMAIL PROTECTED] | grep Andreas sig 3C09FD35A 2004-08-16 Andreas Tille [EMAIL PROTECTED] The signature is under uid Philipp Benner [EMAIL PROTECTED]. Regards, -- Philipp Benner signature.asc Description: Digital signature
Bug#457633: transmission: Option to bias towards downloading chunks in file order
Upstream decided to not implement this wishlist bug. Charles wrote: On the surface this sounds like a good idea -- in fact, some older versions of Transmission did a variation of this -- but in practice it can cause very unhealthy swarms. I don't think this is a good idea for Transmission. I will therefore tag this bug as `wontfix'. Regards, -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#458202: transmission: buggy handling of command line options
Package: transmission Version: 0.96.dfsg-1 Severity: normal transmission segfaults when passing command line options that are unknown, e.g.: $ ./transmission -k (transmission:23138): GLib-CRITICAL **: g_hash_table_lookup: assertion `hash_table != NULL' failed (transmission:23138): GLib-CRITICAL **: g_hash_table_insert: assertion `hash_table != NULL' failed [...] zsh: segmentation fault ./transmission -k -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Versions of packages transmission depends on: ii transmission-cli 0.96.dfsg-1 free, lightweight BitTorrent clien ii transmission-common 0.96.dfsg-1 free, lightweight BitTorrent clien ii transmission-gtk 0.96.dfsg-1 free, lightweight BitTorrent clien transmission recommends no packages. -- no debconf information -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#456145: Should only write changed prefs to .transmission/gtk/prefs.ini
I keep my home directory in version control, as a means of sharing it across systems, keeping it backed up, and tracking changes to it. One of the biggest problems I run into relates to applications that always write out their entire preferences, rather than only changed preferences. This makes it much harder to track changes and share files across machines. Could transmission please write out only its changed preferences, rather than all preferences? I don't see the point here why it is necessary to only write changes. A good revision control system should recognize what changed anyway. I just tested it with git. After commiting all files in ~/.transmission I changed one option: $ git diff diff --git a/gtk/prefs.ini b/gtk/prefs.ini index b733d78..7f023f0 100644 --- a/gtk/prefs.ini +++ b/gtk/prefs.ini @@ -4,7 +4,7 @@ download-limit-enabled=false download-limit=100 upload-limit-enabled=true upload-limit=50 -prompt-for-download-directory=false +prompt-for-download-directory=true default-download-directory=/home/philipp/tmp listening-port=9090 nat-traversal-enabled=true As you see, the diff shows only the one option that I changed. Anyway, it is _much_ easier to write the whole preferences file. At the moment I tend to close this bug if you don't have any objections. Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#452405: ITA: mcl -- the Markov Cluster algorithm
Hi Bart, thanks that you checked that. However, Jan van der Steen is mentioned as the author of util/pool.[ch] but those files are not included in the package (anymore). Regards, -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#454127: transmission-gtk: assertion failures on many torrents
Hi Hamish, Version: 0.91.dfsg-1 Could you please test version 0.93.dfsg-2 (which should move to testing this night)? There have been a lot of bugfixes, hence it is very likely that this bug has already been fixed. Kind regards, -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#451975: ITP: cl-plplot -- A CFFI based interface to the PLplot scientific plotting library
Hi! Are you going to maintain the package under the CL-Debian umbrella [1]? Didn't think about that yet, but yeah, that would be great. You can download a first version of the package from http://www-lehre.informatik.uos.de/~pbenner/debian/cl-plplot_0.4.0-1.dsc (I also need a sponsor for that package.) Greetings -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#452379: python-biopython: import Bio.PDB failed on sid
Should it be moved into Recommends to solve this issue ? Right, I'll fix that with the next upload. Thanks -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#452379: python-numeric-ext-recommends.debdiff
On Thu, Nov 22, 2007 at 01:50:40PM +0100, Johan Euphrosine wrote: If yes, please review that the following debdiff corrects the issue. Thanks. Looks good, is almost identical to my changes. Just have a look at svn://svn.debian.org/debian-med/trunk/packages/python-biopython/ Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#451975: ITP: cl-plplot -- A CFFI based interface to the PLplot scientific plotting library
Package: wnpp Severity: wishlist Owner: Philipp Benner [EMAIL PROTECTED] * Package name: cl-plplot Version : 0.4.0 Upstream Author : Hazen Babcoc [EMAIL PROTECTED] * URL : http://common-lisp.net/project/cl-plplot/ * License : MIT Programming Lang: Lisp Description : A CFFI based interface to the PLplot scientific plotting library Cl-plplot provides a CFFI based interface to the PLplot graphics library. The PLplot graphics library supports the drawing of many different types of 2D and 3D graphs using a large variety of output devices including X11, postscript and png. PLplot can also be used to make scaled drawing, or diagrams. At present, cl-plplot consists of two packages, one is low-level interface to the PLplot library and the other is high-level plotting interface that attempts to make using PLplot with Lisp easier. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15) Shell: /bin/sh linked to /bin/bash -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#450509: transmission: High system load on startup
Hi, your version is quite old (0.6.1.dfsg-1) could you please test the current version 0.91.dfsg-1 from unstable? Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#444450: sbcl: garbage collector failure: attempted to scavenge non-descriptor value
Package: sbcl Version: 1:1.0.9.0-1 Severity: important Hi, I get the following warnings when running the attached code: * (load debug) T * (main) warning: attempted to scavenge non-descriptor value 40942156 at 0x7f9b9d88. If you can reproduce this warning, please send a bug report (see manual page for details). warning: attempted to scavenge non-descriptor value 40942156 at 0x7f9ba1b8. If you can reproduce this warning, please send a bug report (see manual page for details). warning: attempted to scavenge non-descriptor value 408e163a at 0x7f9b9d88. If you can reproduce this warning, please send a bug report (see manual page for details). warning: attempted to scavenge non-descriptor value 408e163a at 0x7f9ba1b8. If you can reproduce this warning, please send a bug report (see manual page for details). The code is from a bigger project but I could reduce it to a few lines. It seems to be a problem with the garbage collector (more precisely with src/runtime/gc-common.c). The bug might only occur on non x86/X86_64 machines. Regards -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15) Shell: /bin/sh linked to /bin/bash Versions of packages sbcl depends on: ii common-lisp-controller6.11 Common Lisp source and compiler ma ii libc6 2.6.1-1GNU C Library: Shared libraries Versions of packages sbcl recommends: ii binfmt-support1.2.10 Support for extra binary formats -- no debconf information -- Philipp Benner (defvar l '(1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89)) (defvar *data* '((1 11511.389 42106.39) (2 11503.056 42855.277) (3 11438.333 42057.223) (4 11438.333 42057.223) (5 11438.333 42057.223) (6 11785.277 42884.445) (7 11785.277 42884.445) (8 11785.277 42884.445) (9 11785.277 42884.445) (10 12363.333 43189.168) (11 11846.944 42660.555) (12 11503.056 42855.277) (13 11963.056 43290.555) (14 11963.056 43290.555) (15 12300.0 42433.332) (16 11973.056 43026.11) (17 11973.056 43026.11) (18 11461.111 43252.777) (19 11461.111 43252.777) (20 11461.111 43252.777) (21 11461.111 43252.777) (22 11600.0 43150.0) (23 12386.667 43334.723) (24 12386.667 43334.723) (25 11595.0 43148.055) (26 11595.0 43148.055) (27 11569.444 43136.668) (28 11310.277 42929.445) (29 11310.277 42929.445) (30 11310.277 42929.445) (31 11963.056 43290.555) (32 11416.667 42983.332) (33 11416.667 42983.332) (34 11595.0 43148.055) (35 12149.444 42477.5) (36 11595.0 43148.055) (37 11595.0 43148.055) (38 11108.611 42373.89) (39 11108.611 42373.89) (40 11108.611 42373.89) (41 11108.611 42373.89) (42 11183.333 42933.332) (43 12372.777 42711.39) (44 11583.333 43150.0) (45 11583.333 43150.0) (46 11583.333 43150.0) (47 11583.333 43150.0) (48 11583.333 43150.0) (49 11822.777 42673.61) (50 11822.777 42673.61) (51 12058.333 42195.555) (52 11003.611 42102.5) (53 11003.611 42102.5) (54 11003.611 42102.5) (55 11522.223 42841.945) (56 12386.667 43334.723) (57 12386.667 43334.723) (58 12386.667 43334.723) (59 11569.444 43136.668) (60 11569.444 43136.668) (61 11569.444 43136.668) (62 11155.833 42712.5) (63 11155.833 42712.5) (64 11155.833 42712.5) (65 11155.833 42712.5) (66 11133.333 42885.832) (67 11133.333 42885.832) (68 11133.333 42885.832) (69 11133.333 42885.832) (70 11133.333 42885.832) (71 11003.611 42102.5) (72 11770.277 42651.945) (73 11133.333 42885.832) (74 11690.556 42686.668) (75 11690.556 42686.668) (76 11751.111 42814.445) (77 12645.0 42973.332) (78 12421.667 42895.555) (79 12421.667 42895.555) (80 11485.556 43187.223) (81 11423.889 43000.277) (82 11423.889 43000.277) (83 11715.833 41836.11) (84 11297.5 42853.332) (85 11297.5 42853.332) (86 11583.333 43150.0) (87 11569.444 43136.668) (88 12286.944 43355.555) (89 12355.833 43156.39))) (defun permutation (list optional (destructive nil) aux (new-list (if destructive list (copy-list list))) (n (length new-list))) (loop for i below n do (rotatef (elt new-list i) (elt new-list (random n new-list) (defun get-position (city data) Returns the position of a city. (apply 'vector (loop for i in data thereis (when (equal city (first i)) (cdr i) (defun euclidean-norm (vector) (sqrt (reduce #'+ (map 'vector #'(lambda (x) (expt x 2)) vector (defun sub-vectors (v1 rest tail) (let ((result v1)) (loop for v2 in tail do (setf result (map
Bug#435229: wise ftbfs
I experienced the very same problem with wise. This is the build log: http://buildd.debian.org/fetch.cgi?pkg=wisever=2.4.0-2arch=s390stamp=1186165049file=log genewise6.eps is a quite small eps file, maybe its a good start for debugging the problem. Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#435717: transmission-gtk aborts. Failed assert.
Hi Brandon, is there any chance that you can reproduce that bug? Maybe try the current svn version, it is very likely that it is already fixed. Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#427136: package ready
Package is ready and can be obtained from http://mentors.debian.net/debian/pool/main/w/wmmemload/ Currently seeking for a sponsor... -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#424065: python-numeric: python-2.5 support missing
Package: python-numeric Version: 24.2-7 Severity: important This package misses python-2.5 support which leads to FTBFS for all packages that build-depend on it. -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable') Architecture: powerpc (ppc) Kernel: Linux 2.6.18 Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15) Shell: /bin/sh linked to /bin/bash Versions of packages python-numeric depends on: ii libc6 2.3.6.ds1-13 GNU C Library: Shared libraries ii python 2.4.4-2 An interactive high-level object-o ii python-central 0.5.13-0.1 register and build utility for Pyt python-numeric recommends no packages. -- no debconf information -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#406363: python-egenix-mxdatetime: python-2.5 now flagged as supported
Hi, now that python-2.5 is flagged as supported in sid could you please rebuild egenix-mx-base? -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#424025: python-biopython: FTBFS: *** mxTextTools *** is either not installed or out of date.
The package fails to rebuild because python-egenix-mxtexttools misses python-2.5 support. I informed the maintainer to rebuild the package (and also the one of python-numeric). Cheers -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#411424: package ready/searching for a sponsor
The package is ready and can be downloaded from: http://www-lehre.inf.uos.de/~pbenner/debian/#prolog-el_1.14-1_powerpc I'm currently searching for a sponsor. -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#211466: \fP on a separated line produces incorrect output
`.IP' is not interpreted correctly because of the preceding `\fP' on a separated line (see test.1). ---test.1 .TH LINUX 1 .PP Test \fBbold \fP .PP Paragraph - The following two examples produce correct output. ---test.2 .TH LINUX 1 .PP Test \fBbold\fP .PP Paragraph - ---test.3 .TH LINUX 1 .PP Test .ft B bold .ft .PP Paragraph - `\fB' and `\fP' are used by the userinput environment (and various others) to produce bold text. According to the groff manual the `\f' escape is only used for changing fonts in the middle of words. So the `.ft' request seems to be the far better way for changing fonts in the userinput environment. I'll try to fix this with the next docbook-to-man upload. However, I'm not sure whether this is still also a groff issue. Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#414879: libcunit1-dev: curses support (/usr/include/CUnit/CUCurses.h file) is missing
I can't compile CUnit test executable with a curses frontend. It seems that CUCurses.h file was lost in Debian (although available at sf.net). There are no recommended packages, although libncurses or smth would be the obvious. This version of cunit has been compiled without ncurses to provide a minimal library without much dependencies for the next stable release. I will prepare a new version with ncurses support within the next two or three weeks. Regards -- Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#389932: Help with menu (Was: Bug#389932: wish: gnumed --debug should open terminal window)
Thanks for the hint to the -hold feature but it seems to work only for real xterm. So I have probably several possibilities: 1. Make gnumed-client dependant from xterm (which seems be useless for most of the cases. 2. Make a separate package gnumed-client debug which depends from xterm and contains not much more than the menu entry and this dependency. 3. File bugs against all packages that provide x-terminal-emulator but do not show the -hold feature (would this be reasonable) 4. ??? What would you think would be a reasonable solution? Maybe this is what you are looking for: x-terminal-emulator -e 'gnumed --debug; echo [press enter to quit]; read' It's not a smart solution but it works. Regards -- Philipp Benner signature.asc Description: Digital signature
Bug#388632: New Upstream Version
Package: chicken Version: 2.3-1 Servity: wishlist There is a new upstream version available (2.41). Regards -- Philipp Benner signature.asc Description: Digital signature
Bug#388644: chicken-setup installs files to /usr/... which might be mounted read-only
Package: chicken
Version: 2.3-1
Severity: normal
Tags: patch
Chicken-setup installs extensions (eggs) to /usr/lib/chicken which might be
mounted as read-only.
http://www.debian.org/doc/packaging-manuals/fhs/fhs-2.3.html#PURPOSE31
/var is specified here in order to make it possible to mount /usr
read-only. Everything that once went into /usr that is written to during
system operation (as opposed to installation and software maintenance)
must be in /var.
I would recommend to move the repository to
/var/lib/chicken and wrote a patch which allows to change the repository
path by setting localstatedir (e.g. --localstatedir=/var).
(This patch is against chicken 2.41.)
Regards
--
Philipp Benner
--- chicken-2.41.orig/Makefile.am
+++ chicken-2.41/Makefile.am
@@ -58,8 +58,8 @@
chicken_static_LDADD = chicken.o support.o easyffi.o compiler.o optimizer.o
c-platform.o c-backend.o batch-driver.o libchicken.la $(MORE_STATIC_LIBS)
chicken_static_LDFLAGS = -static $(LINKFLAGS)
-BASE_CPPFLAGS=-DC_STACK_GROWS_DOWNWARD=$(STACK_GROWS_DOWNWARD)
-DC_INSTALL_LIB_HOME='$(pkglibdir)/$(BINARY_VERSION)' \
- -DC_INSTALL_HOME='$(pkgdatadir)' -DC_USE_C_DEFAULTS
+BASE_CPPFLAGS=-DC_STACK_GROWS_DOWNWARD=$(STACK_GROWS_DOWNWARD) \
+ -DC_INSTALL_LIB_HOME='$(localstatedir)/lib/chicken/$(BINARY_VERSION)'
-DC_INSTALL_HOME='$(pkgdatadir)' -DC_USE_C_DEFAULTS
INCLUDES=$(BASE_CPPFLAGS) -DC_NO_PIC_NO_DLL
library.lo: library.c chicken.h
@@ -123,7 +123,7 @@
echo # define C_INSTALL_HOME \${pkgdatadir}\ chicken-defaults.h; \
echo #endif chicken-defaults.h; \
echo #ifndef C_INSTALL_LIB_HOME chicken-defaults.h; \
- echo # define C_INSTALL_LIB_HOME \${pkglibdir}/${BINARY_VERSION}\
chicken-defaults.h; \
+ echo # define C_INSTALL_LIB_HOME
\${localstatedir}/lib/chicken/${BINARY_VERSION}\ chicken-defaults.h; \
echo #endif chicken-defaults.h; \
echo #ifndef C_DEFAULT_TARGET_STACK_SIZE chicken-defaults.h; \
echo # define C_DEFAULT_TARGET_STACK_SIZE ($${nursery})
chicken-defaults.h; \
--- chicken-2.41.orig/Makefile.in
+++ chicken-2.41/Makefile.in
@@ -200,8 +200,8 @@
chicken_static_LDADD = chicken.o support.o easyffi.o compiler.o optimizer.o
c-platform.o c-backend.o batch-driver.o libchicken.la $(MORE_STATIC_LIBS)
chicken_static_LDFLAGS = -static $(LINKFLAGS)
-BASE_CPPFLAGS = -DC_STACK_GROWS_DOWNWARD=$(STACK_GROWS_DOWNWARD)
-DC_INSTALL_LIB_HOME='$(pkglibdir)/$(BINARY_VERSION)' \
- -DC_INSTALL_HOME='$(pkgdatadir)' -DC_USE_C_DEFAULTS
+BASE_CPPFLAGS = -DC_STACK_GROWS_DOWNWARD=$(STACK_GROWS_DOWNWARD) \
+ -DC_INSTALL_LIB_HOME='$(localstatedir)/lib/chicken/$(BINARY_VERSION)'
-DC_INSTALL_HOME='$(pkgdatadir)' -DC_USE_C_DEFAULTS
INCLUDES = $(BASE_CPPFLAGS) -DC_NO_PIC_NO_DLL
@@ -1599,7 +1599,7 @@
echo # define C_INSTALL_HOME \${pkgdatadir}\ chicken-defaults.h; \
echo #endif chicken-defaults.h; \
echo #ifndef C_INSTALL_LIB_HOME chicken-defaults.h; \
- echo # define C_INSTALL_LIB_HOME \${pkglibdir}/${BINARY_VERSION}\
chicken-defaults.h; \
+ echo # define C_INSTALL_LIB_HOME
\${localstatedir}/lib/chicken/${BINARY_VERSION}\ chicken-defaults.h; \
echo #endif chicken-defaults.h; \
echo #ifndef C_DEFAULT_TARGET_STACK_SIZE chicken-defaults.h; \
echo # define C_DEFAULT_TARGET_STACK_SIZE ($${nursery})
chicken-defaults.h; \
signature.asc
Description: Digital signature
Bug#358878: new packages
Hello, to accelerate the progress of packageing transmission I started a new try. The packages are at mentors.debian.net: http://mentors.debian.net/debian/pool/main/t/transmission I don't think that the mentioned license problems are major. Nevertheless, some files are lincensed under other licenses but all are free. I listed them in the copyright file. The only ambiguous part is the Sparkle tree which I removed from the source package. I don't think that there is a reason why this package should not enter the archive. Regards, Philipp Benner -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#379604: ITP: wise -- comparison of biopolymers, commonly DNA and protein sequence
Package: wise
Severity: wishlist
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
sequence and protein sequence. There are many other packages which do
this, probably the best known being BLAST package (from NCBI) and the
Fasta package (from Bill Pearson). There are other packages, such as
the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
on hidden Markov models (HMMs) of biopolymers.
Wise2's particular forte is the comparison of DNA sequence at the level
of its protein translation. This comparison allows the simultaneous
prediction of say gene structure with homology based alignment. There is
currently no other package that I know of that contains this type of
algorithm with a full blown gene prediction model and a hidden Markov
model of a protein domain.
Wise2 also contains other algorithms, such as the venerable Smith-Waterman
algorithm, or more modern ones such as Stephen Altschul's generalised
gap penalties, or even experimental ones developed in house, such as
dba (see section \ref{sec:dba}). The development of these algorithms
is due to the ease of developing such algorithms in the enviroment
used by Wise2.
Wise2 has also been written with an eye for reuse and maintainability.
Although it is a pure C package you can access its functionality
directly in Perl. Parts of the package (or the entire package) can
be used by other C or C++ programs without namespace clashes as all
externally linked variables have the unqiue identifier Wise2 prepended.
Java and CORBA ports are being considered - see \ref{sec:api} the
API section
Finally Wise2, although implemented in C makes heavy use of the Dynamite
code generating language. Dynamite was written for this project, by
Ewan Birney. There is a separate documentation for Dynamite found at
http://www.sanger.ac.uk/Software/Dynamite.
Downloaded from:
ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/
License: GPL
License for dynlibsrc:
All of the documentation and software included in the dynlibsrc
directory of the Wise2 package directory is copyrighted by Genome
Research Limited (GRL) and other individuals where appropriate. This
license is modelled after the 'BSD' style license and is appropriate
for use by both academic and commericial sites, without placing any
restriction on the distribution of source code from other sources with
this software.
Copyright 1998, 1999, GRL and others.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1.Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2.Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the
distribution.
3.Neither the name GRL nor the names of its contributors may be used
to endorse or promote products derived from this software without
specific prior written permission.
It is considered polite to indicate where appropriate that software which
is developed using this source code includes a statement that it was developed
using the Wise2 soure code. This is not a requirement however.
THIS SOFTWARE IS PROVIDED BY THE GRL AND CONTRIBUTORS ``AS IS'' AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GRL OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
pgpLPFsGEkWtD.pgp
Description: PGP signature
