Bug#481135: r-cran-vgam: Unspecified dependency: libgfortran2

2008-05-13 Thread Sylvain FORET
Package: r-cran-vgam
Version: 0.7-4-1
Severity: important


When loading VGAM from R, I get the following error:
 library(VGAM)
Loading required package: splines
Loading required package: stats4
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared library '/usr/lib/R/site-library/VGAM/libs/VGAM.so':
  libgfortran.so.2: cannot open shared object file: No such file or directory
Error: package/namespace load failed for 'VGAM'

Installing the package libgfortran2 fixes the problem.

Solutions:
The package would either have to be compiled again libgfortran3, on
which r-base-core depends, or to specify libgfortran2 as a dependency.

Many thanks,
Sylvain


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 2.6.25.2-sf-imac (SMP w/2 CPU cores; PREEMPT)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages r-cran-vgam depends on:
ii  r-base-core   2.7.0-1GNU R core of statistical computin

r-cran-vgam recommends no packages.

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Bug#406314: update-manager: wrong path to 'lsb_release'

2007-01-10 Thread Sylvain FORET

Package: update-manager
Version: 0.42.2ubuntu22-8
Severity: normal


In file '/var/lib/python-support/python2.4/UpdateManager/MetaRelease.py',
line 75, (in function 'MetaRelease.get_dist')
The following call is made:
Popen([/bin/lsb_release,-c,-s],stdout=PIPE)
but 'lsb_release' is in '/usr/bin' by default.
This raises an exception ...

-- System Information:
Debian Release: 4.0
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.19.1-sf-tenebrio
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8)

Versions of packages update-manager depends on:
ii  libgnome2-perl1.040-1Perl interface to the GNOME 
librar
ii  lsb-release   3.1-22 Linux Standard Base version 
report
ii  python2.4.4-2An interactive high-level 
object-o

ii  python-apt0.6.19 Python interface to libapt-pkg
ii  python-glade2 2.8.6-8GTK+ bindings: Glade support
ii  python-gnome2 2.12.4-5   Python bindings for the 
GNOME desk

ii  python-gnupginterface 0.3.2-9Python interface to GnuPG (GPG)
ii  python-support0.5.6  automated rebuilding 
support for p

ii  synaptic  0.57.11Graphical package manager

update-manager recommends no packages.

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Bug#389146: linux-uvc-source: problem with intel iMac20

2006-09-24 Thread Sylvain FORET
Package: linux-uvc-source
Severity: important
Tags: patch


The linux-uvc kernel driver does not work with the iSight camera on my
Intel-based iMac 20.
Below is a patch that fixes the driver so that it works with this
camera.


diff -Naur linux-uvc-0.1.0-b/uvcvideo.c linux-uvc-0.1.0-c/uvcvideo.c
--- linux-uvc-0.1.0-b/uvcvideo.c2006-07-23 06:31:27.0 +1000
+++ linux-uvc-0.1.0-c/uvcvideo.c2006-09-21 12:41:29.0 +1000
@@ -49,7 +49,7 @@
 
 #define DRIVER_AUTHOR  Laurent Pinchart [EMAIL PROTECTED]
 #define DRIVER_DESCUSB Video Class driver
-#define DRIVER_VERSION 0.1.0-b
+#define DRIVER_VERSION 0.1.0-c
 #define DRIVER_VERSION_NUMBER  KERNEL_VERSION(0, 1, 0)
 
 #define UVC_CTRL_TIMEOUT   300
@@ -75,6 +75,8 @@
 0x80, 0x00, 0x00, 0xaa, 0x00, 0x38, 0x9b, 0x71}
 #define UVC_GUID_FORMAT_YUY2A  {0x59, 0x55, 0x59, 0x32, 0x00, 0x00, 0x10, 
0x00, \
 0x00, 0x80, 0x71, 0x9b, 0x38, 0x00, 0xaa, 0x00}
+#define UVC_GUID_FORMAT_UYVY{0x55, 0x59, 0x56, 0x59, 0x00, 0x00, 0x10, 
0x00, \
+ 0x80, 0x00, 0x00, 0xaa, 0x00, 0x38, 0x9b, 
0x71}
 #define UVC_GUID_FORMAT_NV12   {0x4e, 0x56, 0x31, 0x32, 0x00, 0x00, 0x10, 
0x00, \
 0x80, 0x00, 0x00, 0xaa, 0x00, 0x38, 0x9b, 0x71}
 
@@ -570,6 +572,10 @@
.fcc= V4L2_PIX_FMT_UYVY,
},
{
+   .guid   = UVC_GUID_FORMAT_UYVY,
+   .fcc= V4L2_PIX_FMT_UYVY,
+   },
+   {
.guid   = UVC_GUID_FORMAT_NV12,
.fcc= V4L2_PIX_FMT_NV12,
},


-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.17.13-sf-imac
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8)


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Bug#342475: bioperl: unmet dependency for Bio::TreeIO::svggraph.pm

2005-12-07 Thread Sylvain FORET
Package: bioperl
Version: 1.4-1
Severity: normal


The perl module Bio::TreeIO::svggraph.pm uses the followgin packages:

use SVG::Graph::Data;
use SVG::Graph::Data::Tree;
use SVG::Graph::Data::Node;

Which are part of the 'SVG::Graph' module.
However, this 'SVG::Graph' module is apparently not part of the Debian
distribution.
Therefore it seems that Bio::TreeIO::svggraph.pm cannot possibly work on
a Debian system without manual installation of this unmet dependency.

Thanks,

SF

-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'stable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12.5
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)

Versions of packages bioperl depends on:
ii  libgd-gd2-perl1:2.30-1   Perl module wrapper for libgd - gd
ii  libio-string-perl 1.05-1 Emulate IO::File interface for in-
ii  libsoap-lite-perl 0.60-2 Client and server side SOAP implem
ii  perl [libstorable-perl]   5.8.7-7Larry Wall's Practical Extraction 
ii  readseq   1-6[Biology] Conversion between seque

Versions of packages bioperl recommends:
ii  blast2   1:2.2.12.20050828-1 Basic Local Alignment Search Tool
ii  libdbd-mysql-perl3.0002-1A Perl5 database interface to the 
pn  libdigest-md5-perl   none  (no description available)
pn  libgraph-perlnone  (no description available)
ii  libhtml-parser-perl  3.46-1  A collection of modules that parse
pn  libio-stringy-perl   none  (no description available)
ii  libnet-perl  1:1.19-1Implementation of Internet protoco
ii  libtext-shellwords-p 1.03-1  Tokenises lines of text
ii  liburi-perl  1.35-1  Manipulates and accesses URI strin
ii  libwww-perl  5.803-4 WWW client/server library for Perl
ii  libxml-dom-perl  1.43-4  Perl module for building DOM Level
pn  libxml-node-perl none  (no description available)
ii  libxml-parser-perl   2.34-4  Perl module for parsing XML files
ii  libxml-perl  0.08-1  Perl modules for working with XML
ii  libxml-twig-perl 3.23-1  Perl module for processing huge XM
ii  libxml-writer-perl   0.600-2 Perl module for writing XML docume
ii  perl [libmime-base64 5.8.7-7 Larry Wall's Practical Extraction 
ii  perl-modules [libnet 5.8.7-7 Core Perl modules

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Bug#329345: gnumeric does not start

2005-09-21 Thread Sylvain FORET
Package: gnumeric
Version: 1.5.1-1
Severity: grave
Justification: renders package unusable


In debian testing, after a libgoffice-1 upgrade, gnumeric does not
start.  It crashes with the following error message:

gnumeric: symbol lookup error: gnumeric: undefined symbol: cell_formats

and return 127.
It is easy to reproduce the bug: just try and start gnumeric.

Regards,

SF


-- System Information:
Debian Release: testing/unstable
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'stable')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12.5
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)

Versions of packages gnumeric depends on:
ii  gconf22.10.1-2   GNOME configuration database syste
ii  gnumeric-common   1.5.1-1common files for Gnumeric, the GNO
ii  gsfonts   8.14+v8.11+urw-0.2 Fonts for the Ghostscript interpre
ii  libart-2.0-2  2.3.17-1   Library of functions for 2D graphi
ii  libatk1.0-0   1.10.1-2   The ATK accessibility toolkit
ii  libbonobo2-0  2.10.0-1   Bonobo CORBA interfaces library
ii  libbonoboui2-02.10.0-1   The Bonobo UI library
ii  libc6 2.3.5-6GNU C Library: Shared libraries an
ii  libgconf2-4   2.10.1-2   GNOME configuration database syste
ii  libglade2-0   1:2.5.1-2  library to load .glade files at ru
ii  libglib2.0-0  2.8.0-1The GLib library of C routines
ii  libgnome2-0   2.10.1-1   The GNOME 2 library - runtime file
ii  libgnomecanvas2-0 2.10.2-2   A powerful object-oriented display
ii  libgnomeprint2.2-02.10.3-2   The GNOME 2.2 print architecture -
ii  libgnomeprintui2.2-0  2.10.2-2   GNOME 2.2 print architecture User 
ii  libgnomeui-0  2.10.1-1   The GNOME 2 libraries (User Interf
ii  libgnomevfs2-02.10.1-5   The GNOME virtual file-system libr
ii  libgoffice-1  0.0.4-1Document centric objects library -
ii  libgsf-1  1.12.2-1   Structured File Library - runtime 
ii  libgsf-gnome-11.12.2-1   Structured File Library - runtime 
ii  libgtk2.0-0   2.6.8-1The GTK+ graphical user interface 
ii  libice6   6.8.2.dfsg.1-6 Inter-Client Exchange library
ii  liborbit2 1:2.12.2-3 libraries for ORBit2 - a CORBA ORB
ii  libpango1.0-0 1.8.2-1Layout and rendering of internatio
ii  libpopt0  1.7-5  lib for parsing cmdline parameters
ii  libsm66.8.2.dfsg.1-6 X Window System Session Management
ii  libxml2   2.6.21-1   GNOME XML library
ii  xlibs 6.8.2.dfsg.1-6 X Window System client libraries m
ii  zlib1g1:1.2.3-4  compression library - runtime

gnumeric recommends no packages.

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Bug#329345: gnumeric does not start

2005-09-21 Thread Sylvain FORET

J.H.M. Dassen (Ray) wrote:

tags 329345 + testing pending
close 329345 1.5.90-1
thanks

On Wed, Sep 21, 2005 at 19:07:02 +1000, Sylvain FORET wrote:


In debian testing, after a libgoffice-1 upgrade, gnumeric does not
start.



As goffice's API has not stabilised yet, gnumeric and goffice need to be
upgraded in lock-step. The dependencies in testing do not reflect that which
causes this problem. goffice's shlibs file in unstable has been updated to
ensure lock-step updates to prevent this type of problem in the future.

Ray


Thanks for the quick reply.
I installed gnumeric from unstable 'cause I really need it *now*.
Works just fine.

Cheers,

SF


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