Hi Bilal,
You added in autopkgtests for this one -- could you please take a look?
On Sun, 31 Jul 2022 22:06:50 +0200 Paul Gevers wrote:
> Source: megadepth
> Version: 1.2.0-3
> Severity: serious
> User: debian...@lists.debian.org
> Usertags: fails-always
>
> Dear maintainer(s),
>
> You recently added an autopkgtest to your package megadepth, great.
> However, it fails on s390x. Currently this failure is blocking the
> migration to testing [1]. Can you please investigate the situation and
> fix it?
>
> I copied some of the output at the bottom of this report.
>
> More information about this bug and the reason for filing it can be found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
>
> Paul
>
> [1] https://qa.debian.org/excuses.php?package=megadepth
>
> https://ci.debian.net/data/autopkgtest/testing/s390x/m/megadepth/23583699/log.gz
>
> [93m[1mRunning Tests[0m
> [93m[1mTest 1[0m
> building whole annotation region map done
> 2 chromosomes for annotated regions read
> 0 chromosomes for annotated regions read, collapsed
> total number of annotations in collapsed: 0
> Processing BAM: "tests/test_noprefix.bam"
> /tmp/autopkgtest-lxc.gmfzuwos/downtmp/build.jJn/src/debian/tests/run-unit-test:
>
> line 33: 1590 Segmentation fault megadepth tests/test_noprefix.bam
> --prefix test.bam --threads 4 --bigwig --auc --min-unique-qual 10
> --annotation tests/test_exons.bed --frag-dist --alts --include-softclip
> --only-polya --read-ends --test-polya --no-annotation-stdout
> --no-auc-stdout --filter-out 260 --add-chr-prefix human
> autopkgtest [04:42:40]: test run-unit-test
>
--
Best,
Nilesh
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