Bug#1023807: seqan-needle: /usr/bin/needle is already shipped by emboss
Followup-For: Bug #1023807 Control: found -1 1.0.1.0.0.git.3011926+ds-2 Something didn't work with the moving of the binary to /usr/lib/debian-med/bin ... drwxr-xr-x root/root 0 2022-11-16 17:00 ./ drwxr-xr-x root/root 0 2022-11-16 17:00 ./usr/ drwxr-xr-x root/root 0 2022-11-16 17:00 ./usr/bin/ -rwxr-xr-x root/root879920 2022-11-16 17:00 ./usr/bin/needle drwxr-xr-x root/root 0 2022-11-16 17:00 ./usr/share/ ... lrwxrwxrwx root/root 0 2022-11-16 17:00 ./usr/bin/seqan-needle -> ../lib/debian-med/bin/needle Andreas
Bug#1023807: seqan-needle: /usr/bin/needle is already shipped by emboss
Am Wed, Nov 16, 2022 at 04:39:46PM +0100 schrieb Michael Crusoe: > They are different programs, with different interfaces, alas. Thanks for the clarification. > So a workaround will be needed: probably we should rename the binary > `seqan-needle` and provide a directory with a regular `needle` that can be > added to a user's `PATH`. If upstream does not respond quickly you might like to use /usr/lib/debian-med/bin which is used in packages like plink, king-probe and others and Debian Med users should be able to easily setup their PATH. Hope this helps Andreas. -- http://fam-tille.de
Bug#1023807: seqan-needle: /usr/bin/needle is already shipped by emboss
control: forwarded -1 https://github.com/seqan/needle/issues/128 They are different programs, with different interfaces, alas. So a workaround will be needed: probably we should rename the binary `seqan-needle` and provide a directory with a regular `needle` that can be added to a user's `PATH`. On Wed, Nov 16, 2022 at 4:26 PM Andreas Tille wrote: > Hi Michael, > > Am Thu, Nov 10, 2022 at 01:34:32PM +0100 schrieb Andreas Beckmann: > > Package: seqan-needle > > Version: 1.0.1.0.0.git.3011926+ds-1 > > Severity: serious > > > > There is already a (unrelated?) /usr/bin/needle binary in the Debian > > archive, provided by the emboss package. > > Do you think this "needle" (which is an unfortunate name in both > packages) is a drop in replacement for needle inside emboss or > is it something else? > > Kind regards >Andreas. > > -- > http://fam-tille.de > -- Michael R. Crusoe ; he/him https://orcid.org/-0002-2961-9670 CWL Project Leader, Software Freedom Conservancy, Common Workflow Language project Promovendus, VU Amsterdam, Computer Systems & Bioinformatics Project Leader Compute Platform in ELIXIR-NL, DTL Projects ELIXIR-DE Communication Officer, Research Center Jülich
Bug#1023807: seqan-needle: /usr/bin/needle is already shipped by emboss
Hi Michael, Am Thu, Nov 10, 2022 at 01:34:32PM +0100 schrieb Andreas Beckmann: > Package: seqan-needle > Version: 1.0.1.0.0.git.3011926+ds-1 > Severity: serious > > There is already a (unrelated?) /usr/bin/needle binary in the Debian > archive, provided by the emboss package. Do you think this "needle" (which is an unfortunate name in both packages) is a drop in replacement for needle inside emboss or is it something else? Kind regards Andreas. -- http://fam-tille.de
Bug#1023807: seqan-needle: /usr/bin/needle is already shipped by emboss
Package: seqan-needle Version: 1.0.1.0.0.git.3011926+ds-1 Severity: serious There is already a (unrelated?) /usr/bin/needle binary in the Debian archive, provided by the emboss package. Andreas
