Bug#1034349: bedtools: autopkgtest fails on bookworm kernel: ulimit: error setting limit (Operation not permitted)
Hi Andreas, On 14-04-2023 07:33, Andreas Tille wrote: Does this mean you want me to revert the change? Whatever works best for you. Paul OpenPGP_signature Description: OpenPGP digital signature
Bug#1034349: bedtools: autopkgtest fails on bookworm kernel: ulimit: error setting limit (Operation not permitted)
Hi Paul, Am Thu, Apr 13, 2023 at 10:28:13PM +0200 schrieb Paul Gevers: > Thanks for the quick fix. There is good news. Thanks to discussions on IRC > we found a change to the lxc configuration that will enable us to circumvent > the issue. Which means that you can drop the workaround in a future upload. Does this mean you want me to revert the change? IMHO the package is perfectly fine without the ulimit call and reverting the change just creates more noise than needed. So I would prefer to keep the package as is. Thanks a lot for all your hard work on the release Andreas. -- http://fam-tille.de
Bug#1034349: bedtools: autopkgtest fails on bookworm kernel: ulimit: error setting limit (Operation not permitted)
Hi Andreas (and others) On Thu, 13 Apr 2023 12:42:04 +0200 Paul Gevers wrote: Your package has an autopkgtest, great. However, it fails when the host is running a bookworm kernel. I have upgrade several of the ci.debian.net hosts (arm64, i386, ppc64el and s390x) to bookworm and that's where the failure happens. I confirm that running the test on amd64 with a bookworm kernel fails in the same way. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report. Thanks for the quick fix. There is good news. Thanks to discussions on IRC we found a change to the lxc configuration that will enable us to circumvent the issue. Which means that you can drop the workaround in a future upload. Sorry for the noise. Paul OpenPGP_signature Description: OpenPGP digital signature
Bug#1034349: bedtools: autopkgtest fails on bookworm kernel: ulimit: error setting limit (Operation not permitted)
Source: bedtools Version: 2.30.0+dfsg-2 Severity: serious Control: tags -1 bookworm-ignore User: debian...@lists.debian.org Usertags: regression Dear maintainer(s), Your package has an autopkgtest, great. However, it fails when the host is running a bookworm kernel. I have upgrade several of the ci.debian.net hosts (arm64, i386, ppc64el and s390x) to bookworm and that's where the failure happens. I confirm that running the test on amd64 with a bookworm kernel fails in the same way. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report. The release team has announced [1] that failing autopkgtest on amd64 and arm64 are considered RC in testing. [Release Team member hat on] Because we're currently in the hard freeze for bookworm, I have marked this bug as bookworm-ignore. Targeted fixes are still welcome. More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://lists.debian.org/debian-devel-announce/2019/07/msg2.html https://ci.debian.net/data/autopkgtest/testing/arm64/b/bedtools/32856831/log.gz autopkgtest [18:36:06]: test run-unit-test: [--- test.sh: 4: ulimit: error setting limit (Operation not permitted) autopkgtest [18:36:07]: test run-unit-test: ---] OpenPGP_signature Description: OpenPGP digital signature
