Bug#1038668: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

2023-07-20 Thread Andreas Tille
Hi Thorsten,

Am Wed, Jul 19, 2023 at 07:05:32PM +0200 schrieb Thorsten Alteholz:
> On 11.07.23 21:40, Andreas Tille wrote:
> > uploaded with GPL-3.  Thanks for quick checking
> 
> as César confirmed, the code from  Stephane Guindon was already present in
> fasttree-2.1.10.c and really came from an very old version of pyhml that was
> still licensed under GPL-2+.
> So your original entry in debian/copyright was correct.

Yippy. ;-)

> I accepted the current upload with the GPL-3 entry now, but maybe you can
> change it back in a later upload.

Fixed in source only upload.

Thanks for accepting in any case
   Andreas. 

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Bug#1038668: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

2023-07-11 Thread Andreas Tille
Hi Thorsten,
uploaded with GPL-3.  Thanks for quick checking
 Andreas.

Am Tue, Jul 11, 2023 at 07:00:10PM + schrieb Thorsten Alteholz:
> 
> Hi Andreas,
> 
> according to [1] the code from Stephane Guindon was added 2019-05-11 whereas 
> according to [2] the license of pyhml was already changed to GPL-3 in 
> 2018-08-29 ...
> Was the code really based on an earlier version?
> 
>   Thorsten
> 
> [1] 
> https://github.com/citiususc/veryfasttree/blame/master/src/NeighbourJoining.tcc
>  
> [2] 
> https://github.com/stephaneguindon/phyml/commit/0893faa043c47bf5bc78c5388900fec5b7e77205
> 
> 
> 
> ===
> 
> Please feel free to respond to this email if you don't understand why
> your files were rejected, or if you upload new files which address our
> concerns.
> 
> 
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Bug#1038668: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

2023-07-11 Thread PIÑEIRO POMAR CESAR ALFREDO
Dear Thorsten,

As the author of the tool, I can provide an answer. I started implementing 
VeryFastTree in April 2019, using FastTree 2.1.10 
(http://www.microbesonline.org/fasttree/FastTree-2.1.10.c) as the base, which 
was the latest version at that time. This version was released on April 11, 
2017 (http://www.microbesonline.org/fasttree/ChangeLog), although the function 
attributed to Stephane Guindon, according to the author, was included in 
version 2.1.0 on October 15, 2009.

Best regards, and thanks to both of you for your work,

César

De: Thorsten Alteholz 
Enviado: martes, 11 de julio de 2023 21:00
Para: Debian Med Packaging Team ; 
PIÑEIRO POMAR CESAR ALFREDO ; ti...@debian.org 

Asunto: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

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Hi Andreas,

according to [1] the code from Stephane Guindon was added 2019-05-11 whereas 
according to [2] the license of pyhml was already changed to GPL-3 in 
2018-08-29 ...
Was the code really based on an earlier version?

  Thorsten

[1] 
https://github.com/citiususc/veryfasttree/blame/master/src/NeighbourJoining.tcc
[2] 
https://github.com/stephaneguindon/phyml/commit/0893faa043c47bf5bc78c5388900fec5b7e77205



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your files were rejected, or if you upload new files which address our
concerns.

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Bug#1038668: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

2023-07-11 Thread Thorsten Alteholz


Hi Andreas,

according to [1] the code from Stephane Guindon was added 2019-05-11 whereas 
according to [2] the license of pyhml was already changed to GPL-3 in 
2018-08-29 ...
Was the code really based on an earlier version?

  Thorsten

[1] 
https://github.com/citiususc/veryfasttree/blame/master/src/NeighbourJoining.tcc 
[2] 
https://github.com/stephaneguindon/phyml/commit/0893faa043c47bf5bc78c5388900fec5b7e77205



===

Please feel free to respond to this email if you don't understand why
your files were rejected, or if you upload new files which address our
concerns.


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Bug#1038668: veryfasttree_4.0.1+dfsg-1_amd64.changes REJECTED

2023-07-11 Thread Andreas Tille
Hi Thorsten,

Am Sun, Jul 09, 2023 at 07:10:10PM + schrieb Thorsten Alteholz:
> please also mention Stephane Guindon in your debian/copyright.

Fixed in new upload.  Thanks for thorough checking
 Andreas. 

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