Bug#1042029: graph-tool: FTBFS: collect2: fatal error: ld terminated with signal 9 [Killed]
tags 1042029 - patch thanks El 29/10/23 a las 22:46, Jerome BENOIT escribió: Please keep in mind that graph-tool is scientific tool for big-data, so the choice of the optimization option is relevant. Fair enough. I'm removing the patch tag accordingly. I downgraded the severity to normal as this issue is before all a resource issue. I have no problem to build it on a 24 CPUs amd64 box with 64 GB of RAM (and with ~ 4/3 of 64 GB of SWAP). Well, let me describe our build environments: Lucas Nussbaum usually starts a bunch of machines of type t3.2xlarge from AWS, which have 8 CPUs and 32 GB of RAM, then have three "workers" in each of them building packages in parallel (so each package has 10.66 GB of RAM to build on average, but since lots of them build with a lot less than that, it is very rare that a package may not be built because of lack of memory). I do it differently: I start machines with 4GB, 8GB or 16GB and build a single package at a time. Because I monitor /proc/meminfo during build and collect the data, I know which packages build with only 4GB and which packages need 8 GB or 16 GB. For all the 35000 packages in trixie, I have never seen any of them requiring 32 GB so far. So, if it were the case that this package needs 64 GB of RAM to build (which honestly I don't think it's really the case), that would be a problem for us, because that would force to do our QA work differently, just for a single package. In other words, if it were the case that this package needs so much memory, requesting some change (not necessarily removing the -O3 thing) would be legitimate, in my opinion. In this case, I have successful build logs which were made after I said that it failed for me, so it is still possible that there was a compiler bug or something suboptimal in the build chain which has been fixed since then. So, I am adding to my todo list to check this package again in both the environment by Lucas and my own one. (Please Cc me and Lucas on replies, messages which are just sent to the bug address are never forwarded to the bug submitters or casual participants). Thanks.
Bug#1042029: graph-tool: FTBFS: collect2: fatal error: ld terminated with signal 9 [Killed]
Hi all, I downgraded the severity to normal as this issue is before all a resource issue. I have no problem to build it on a 24 CPUs amd64 box with 64 GB of RAM (and with ~ 4/3 of 64 GB of SWAP). Please keep in mind that graph-tool is scientific tool for big-data, so the choice of the optimization option is relevant. Best wishes, Jerome -- Jerome BENOIT | calculus+at-rezozer^dot*net https://qa.debian.org/developer.php?login=calcu...@rezozer.net AE28 AE15 710D FF1D 87E5 A762 3F92 19A6 7F36 C68B OpenPGP_signature Description: OpenPGP digital signature
Bug#1042029: graph-tool: FTBFS: collect2: fatal error: ld terminated with signal 9 [Killed]
Source: graph-tool Version: 2.45+ds-10 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230724 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /bin/bash ./libtool --tag=CXX --mode=link g++ -std=gnu++17 -fopenmp -O3 > -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall > -Wextra -ftemplate-backtrace-limit=0 -g -O2 > -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat > -Werror=format-security -module -avoid-version -export-dynamic -no-undefined > -Wl,-E -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -o libgraph_tool_util.la > -rpath /usr/lib/python3.11/dist-packages/graph_tool/util > src/graph/util/graph_search.lo src/graph/util/graph_util_bind.lo > -L/usr/lib/x86_64-linux-gnu -lpython3.11 -L/usr/lib/x86_64-linux-gnu > -lboost_iostreams -lboost_python311 -lboost_regex -lboost_context > -lboost_coroutine -lexpat-lgmp -lgmp > libtool: link: g++ -fPIC -DPIC -shared -nostdlib > /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crti.o > /usr/lib/gcc/x86_64-linux-gnu/13/crtbeginS.o > src/graph/util/.libs/graph_search.o src/graph/util/.libs/graph_util_bind.o > -L/usr/lib/x86_64-linux-gnu -lpython3.11 -lboost_iostreams -lboost_python311 > -lboost_regex -lboost_context -lboost_coroutine -lexpat -lgmp > -L/usr/lib/gcc/x86_64-linux-gnu/13 > -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu > -L/usr/lib/gcc/x86_64-linux-gnu/13/../../../../lib -L/lib/x86_64-linux-gnu > -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/13/../../.. > -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/13/crtendS.o > /usr/lib/gcc/x86_64-linux-gnu/13/../../../x86_64-linux-gnu/crtn.o -fopenmp > -O3 -g -O2 -fstack-protector-strong -Wl,-E -Wl,--as-needed -Wl,-z -Wl,relro > -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libgraph_tool_util.so -o > .libs/libgraph_tool_util.so > libtool: link: ( cd ".libs" && rm -f "libgraph_tool_util.la" && ln -s > "../libgraph_tool_util.la" "libgraph_tool_util.la" ) > collect2: fatal error: ld terminated with signal 9 [Killed] > compilation terminated. > make[2]: *** [Makefile:3339: libgraph_tool_inference.la] Error 1 The full build log is available from: http://qa-logs.debian.net/2023/07/24/graph-tool_2.45+ds-10_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230724;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na=ign=7=7=only=ftbfs-20230724=lu...@debian.org=1=1=1=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
