Source: sra-sdk
Version: 3.0.3+dfsg-6
Severity: normal
Tags: upstream
Control: affects -1 + src:re2
The next RE2 transition is waiting for sra-sdk to support libre2-11
(re2 >= 20230601), available in experimental.
Upstream, RE2 added a dependency on Abseil, changing its API a little.
It looks like only sharq in sra-tools requires re2, and it currently
expects 2021-09-01:
https://github.com/ncbi/sra-tools/blob/6d1e74850ad399f671da13e8aee39bcef926e551/tools/loaders/sharq/CMakeLists.txt#L89
[ 78%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a
make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu'
cd /<>/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P
CMakeFiles/ncbi
-ngs-c++.dir/cmake_clean_target.cmake
In file included from /<>/test/loaders/sharq/test-regexpr.cpp:30:
/<>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp:
In member functi
on ‘bool CRegExprMatcher::Matches(const std::string_view&)’:
/<>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp:56:40:
error: cannot convert ‘const std::string_view’ {aka ‘const
std::basic_string_view’} to ‘absl::debian3::string_view’
56 | return re2::RE2::PartialMatchN(input, *re, args.empty() ?
nullptr : [0], (int)args.size());
|^
||
|const std::string_view {aka
const std::basic_string_view}
In file included from
/<>/test/loaders/sharq/../../../tools/loaders/sharq/regexpr.hpp:13:
/usr/include/re2/re2.h:343:47: note: initializing argument 1 of ‘static bool
re2::RE2::PartialMatchN(absl::debian3::string_view, const re2::RE2&, const Arg*
const*, int)’
343 | static bool PartialMatchN(absl::string_view text, const RE2& re,
| ~~^~~~
Stefano
sra-sdk_3.0.3+dfsg-6_amd64.build.xz
Description: application/xz
