Bug#700525: sundials: not linked properly against lapack

2013-02-14 Thread Sébastien Villemot
Control: severity -1 serious
Control: retitle -1 sundials: several binary packages not linked properly 
against blas and lapack

Le mercredi 13 février 2013 à 22:33 +0100, Julian Taylor a écrit :
 Package: sundials
 Version: 2.5.0-1
 Severity: normal
 
 even though lapack is in the build dependencies and is picked up by the
 configure step it is not linked against the libraries that need it and
 is thus also lacking a binary dependency:

Raising severity, this is clearly RC.

The following binary packages seem to be affected: libsundials-cvode1,
libsundials-cvodes2, libsundials-ida2, libsundials-idas0,
libsundials-kinsol1. A BLAS dependency is also missing on some of these.

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Bug#700525: sundials: not linked properly against lapack

2013-02-13 Thread Julian Taylor
Package: sundials
Version: 2.5.0-1
Severity: normal

even though lapack is in the build dependencies and is picked up by the
configure step it is not linked against the libraries that need it and
is thus also lacking a binary dependency:

ldd -r /usr/lib/libsundials_cvodes.so.2
linux-vdso.so.1 =  (0x7fff77dff000)
/usr/lib/libeatmydata/libeatmydata.so (0x7f8a152e4000)
/usr/lib/cowdancer/libcowdancer.so (0x7f8a150e)
libm.so.6 = /lib/x86_64-linux-gnu/libm.so.6 (0x7f8a14e5b000)
libc.so.6 = /lib/x86_64-linux-gnu/libc.so.6 (0x7f8a14ad1000)
libdl.so.2 = /lib/x86_64-linux-gnu/libdl.so.2 (0x7f8a148cd000)
/lib64/ld-linux-x86-64.so.2 (0x7f8a1571c000)
undefined symbol: dcopy_(/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dscal_(/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgbtrs_   (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgbtrf_   (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgetrf_   (/usr/lib/libsundials_cvodes.so.2)
undefined symbol: dgetrs_   (/usr/lib/libsundials_cvodes.so.2)

see also:
https://bugs.launchpad.net/ubuntu/+source/sundials/+bug/1124062


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