Bug#721770: mothur: FTBFS on ia64: unrecognized command line option '-m64'
Hi Aaron, thanks for your bug report. Since I have no direct access to a ia64 machine (except the ones any DD can login but this would be more time consuming) I wonder whether you could possibly provide a patch to the makefile which seems to be easy enough when sitting on such a machine. It is just not clear to me whether only one of CXXFLAGS and FORTRAN_FLAGS needs to be droped or both. Once this is clear some if statement evaluating `dpkg-architecture -qDEB_BUILD_ARCH` to be equal to ia64 should do the trick. Any patch / team upload is more than welcome Andreas. On Tue, Sep 03, 2013 at 06:53:07PM -0400, Aaron M. Ucko wrote: Source: mothur Version: 1.31.2+dfsg-1 Severity: serious Justification: fails to build from source The ia64 build of mothur failed because GCC doesn't recognize -m64 there: if [ 64 -eq 64 ] ; then \ dh_auto_build -- 64BIT_VERSION=yes USEMPI=yes \ mv mothur mothur-mpi make clean \ dh_auto_build -- 64BIT_VERSION=yes USEMPI=no ; \ else \ dh_auto_build -- 64BIT_VERSION=no ; \ fi make[2]: Entering directory `/«BUILDDIR»/mothur-1.31.2+dfsg' gfortran -c -m64 *.f f951: error: unrecognized command line option '-m64' I'd suggest doing away with that flag altogether, since it's redundant on the architectures that do support it (disregarding multiarch compiler installations, on which mothur of course doesn't build-depend). Could you please look into it? Thanks! ___ Debian-med-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#721770: mothur: FTBFS on ia64: unrecognized command line option '-m64'
Andreas Tille ti...@debian.org writes: Hi Aaron, Hi, Andreas. thanks for your bug report. Since I have no direct access to a ia64 machine (except the ones any DD can login but this would be more time consuming) I wonder whether you could possibly provide a patch to the makefile which seems to be easy enough when sitting on such a machine. Same here, actually. I just spotted the error during a routine all-architectures check (consulting buildd.d.o) of source packages building binary packages that had shown up on amd64 but not i386 or vice versa. i386 turned out to be a false positive here, as mothur-mpi explicitly excludes 32-bit architectures, but I stumbled across the ia64 error along the way. It is just not clear to me whether only one of CXXFLAGS and FORTRAN_FLAGS needs to be droped or both. Once this is clear some if statement evaluating `dpkg-architecture -qDEB_BUILD_ARCH` to be equal to ia64 should do the trick. Presumably both; regardless, I'd remove the flag unconditionally, because it's redundant at best. Any patch / team upload is more than welcome Great, thanks! I'll go ahead with a team upload shortly, then. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#721770: mothur: FTBFS on ia64: unrecognized command line option '-m64'
Source: mothur Version: 1.31.2+dfsg-1 Severity: serious Justification: fails to build from source The ia64 build of mothur failed because GCC doesn't recognize -m64 there: if [ 64 -eq 64 ] ; then \ dh_auto_build -- 64BIT_VERSION=yes USEMPI=yes \ mv mothur mothur-mpi make clean \ dh_auto_build -- 64BIT_VERSION=yes USEMPI=no ; \ else \ dh_auto_build -- 64BIT_VERSION=no ; \ fi make[2]: Entering directory `/«BUILDDIR»/mothur-1.31.2+dfsg' gfortran -c -m64 *.f f951: error: unrecognized command line option '-m64' I'd suggest doing away with that flag altogether, since it's redundant on the architectures that do support it (disregarding multiarch compiler installations, on which mothur of course doesn't build-depend). Could you please look into it? Thanks! -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
