Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-11-21 17:19, schrieb Andreas Tille: Hi Simon, I have not seen the package in NEW any more and also I can not find a package with this name inside the pool. So it seems it has not passed ftpmasters check. Do you have some VCS with the packaging (or preferably might like to use Debian Med VCS)? Hello! Sorry for the delay, currently i have quite a lot to do. After studying the Debian Med Policy, i have a questions: Should i just import the upstream source into alioth, or just my changes (eg /debian directory + patches)? Sorry if this seems dumb, I don't want to screw things up. I contacted upstream und he fixed the licensing issue ( added license text to easier-to-find places), so it will hopefully make it into the new queue. Thank you. Simon Kind regards Andreas. On Sun, Sep 29, 2013 at 08:37:40PM +0200, Andreas Tille wrote: Hi Simon, On Sun, Sep 29, 2013 at 09:18:58AM +0200, Simon Kainz wrote: Thank you very much. My package is already in the NEW queue, Fine. and after quickly inspecting the Debian Med Policy, i suspect i have to change some entries in the control file (at least) to make it compliant to the Debian Med Policy. So should I just reupload the package after applying my changes or should i wait for FTPMasters to either accept or reject the package. I just want to keep the work needed for the FTPMasters as small as possible, so maybe someone might give ma a hint as how to handle this. It's perfectly OK to wait for ftpmaster response and leave the package in new as is. I have added rtax to the Debian Med bio task as you can see on the according tasks page.[1] Concerning packaging: For packaging itself, i think i don't need help- i already did some packaging work (for some local packages used ad work) and i have a very competent sponsor which helped me to create my packages. We do absolutely not want to disrupt your workflow / relation to your sponsor. It is just an offer since in some cases it has turned out to be hard to find a sponsor. I will try to get my work into alioth/debian-med. That would be great and hopefully helpfull also for your work. I will contact debian-med when I am getting stuck, so be prepared for some questions :-) That's what we are keen on. :-) Kind regards Andreas. [1] http://debian-med.alioth.debian.org/tasks/bio#rtax Am 28.09.2013 um 21:51 schrieb Andreas Tille andr...@an3as.eu: Hi Simon, this package is a perfect target for Debian Med but I noticed you are not yet a member of the Alioth team. Since I'm currently on vaccation and not frequently online I just added skainz-guest to the Debian Med team simply assuming you might consider using Debian Med VCS as described in our team policy[1]. I hope you agree with this and please let us know if you need any help with the packaging. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130923095603.26061.18627.report...@zidpc9027.tu-graz.ac.at - -- http://fam-tille.de -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130929183740.ga12...@an3as.eu -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQIcBAEBAgAGBQJSlJ8aAAoJEBy08PeN7K/ps3cP/1cAarZ5LkywDrT3lBnHBtgb k/gwqVGTMopOQV/Jb4osBOVwQ2TI1kSkZ+NmlF7S2jVN65bCCwckfAUXcwodrEfv Yxsjqt6hTFXCvjqhWGq+CoSZbEIf6byqcCA41Np6OqmYQfk6Uz6wI4eEvykuFhYZ p5CsvsxvEIF5+Unej3qFKQdEy9W/p335HRBxuRXtD3OPpygmNzns+Nm4z44NfF6D k50FMTawNvdsLPHCXvaPTdhhusKZTX8m4AQ+wkqGuSDTYXamj8bxiNoOAtLSZe4r wv+y153YuLvxVJ6UyQe9rIIERrn64N4/Pj9Dz6IwAncEPTVXJ7GaP1Tl6EjKKc/c
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hi Simon. On Tue, Nov 26, 2013 at 02:16:16PM +0100, Simon Kainz wrote: Sorry for the delay, currently i have quite a lot to do. Just take your time. After studying the Debian Med Policy, i have a questions: Should i just import the upstream source into alioth, or just my changes (eg /debian directory + patches)? This depends from the Vcs of your choice. When using git please follow the detailed advise to import pristine tar. In case you prefer SVN we just keep the debian/ dir. Sorry if this seems dumb, I don't want to screw things up. Askin in advance is perfectly welcome - hope my answer is precise enough. I contacted upstream und he fixed the licensing issue ( added license text to easier-to-find places), so it will hopefully make it into the new queue. Cool. Just let us know if you might need any further help. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hi Simon, I have not seen the package in NEW any more and also I can not find a package with this name inside the pool. So it seems it has not passed ftpmasters check. Do you have some VCS with the packaging (or preferably might like to use Debian Med VCS)? Kind regards Andreas. On Sun, Sep 29, 2013 at 08:37:40PM +0200, Andreas Tille wrote: Hi Simon, On Sun, Sep 29, 2013 at 09:18:58AM +0200, Simon Kainz wrote: Thank you very much. My package is already in the NEW queue, Fine. and after quickly inspecting the Debian Med Policy, i suspect i have to change some entries in the control file (at least) to make it compliant to the Debian Med Policy. So should I just reupload the package after applying my changes or should i wait for FTPMasters to either accept or reject the package. I just want to keep the work needed for the FTPMasters as small as possible, so maybe someone might give ma a hint as how to handle this. It's perfectly OK to wait for ftpmaster response and leave the package in new as is. I have added rtax to the Debian Med bio task as you can see on the according tasks page.[1] Concerning packaging: For packaging itself, i think i don't need help- i already did some packaging work (for some local packages used ad work) and i have a very competent sponsor which helped me to create my packages. We do absolutely not want to disrupt your workflow / relation to your sponsor. It is just an offer since in some cases it has turned out to be hard to find a sponsor. I will try to get my work into alioth/debian-med. That would be great and hopefully helpfull also for your work. I will contact debian-med when I am getting stuck, so be prepared for some questions :-) That's what we are keen on. :-) Kind regards Andreas. [1] http://debian-med.alioth.debian.org/tasks/bio#rtax Am 28.09.2013 um 21:51 schrieb Andreas Tille andr...@an3as.eu: Hi Simon, this package is a perfect target for Debian Med but I noticed you are not yet a member of the Alioth team. Since I'm currently on vaccation and not frequently online I just added skainz-guest to the Debian Med team simply assuming you might consider using Debian Med VCS as described in our team policy[1]. I hope you agree with this and please let us know if you need any help with the packaging. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130923095603.26061.18627.report...@zidpc9027.tu-graz.ac.at -- http://fam-tille.de -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130929183740.ga12...@an3as.eu -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hello! Thank you very much. My package is already in the NEW queue, and after quickly inspecting the Debian Med Policy, i suspect i have to change some entries in the control file (at least) to make it compliant to the Debian Med Policy. So should I just reupload the package after applying my changes or should i wait for FTPMasters to either accept or reject the package. I just want to keep the work needed for the FTPMasters as small as possible, so maybe someone might give ma a hint as how to handle this. Concerning packaging: For packaging itself, i think i don't need help- i already did some packaging work (for some local packages used ad work) and i have a very competent sponsor which helped me to create my packages. I will try to get my work into alioth/debian-med. I will contact debian-med when I am getting stuck, so be prepared for some questions :-) Regards, Simon Am 28.09.2013 um 21:51 schrieb Andreas Tille andr...@an3as.eu: Hi Simon, this package is a perfect target for Debian Med but I noticed you are not yet a member of the Alioth team. Since I'm currently on vaccation and not frequently online I just added skainz-guest to the Debian Med team simply assuming you might consider using Debian Med VCS as described in our team policy[1]. I hope you agree with this and please let us know if you need any help with the packaging. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130923095603.26061.18627.report...@zidpc9027.tu-graz.ac.at -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
On Thu, Sep 26, 2013 at 11:27:51PM +0200, Simon Kainz wrote: Hi! Thank you for you suggestions. Well, i already uploaded (actually, my sponsor) the package to the NEW queue. No need to rush things - you can change these things later. Thomas -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hi Simon, On Sun, Sep 29, 2013 at 09:18:58AM +0200, Simon Kainz wrote: Thank you very much. My package is already in the NEW queue, Fine. and after quickly inspecting the Debian Med Policy, i suspect i have to change some entries in the control file (at least) to make it compliant to the Debian Med Policy. So should I just reupload the package after applying my changes or should i wait for FTPMasters to either accept or reject the package. I just want to keep the work needed for the FTPMasters as small as possible, so maybe someone might give ma a hint as how to handle this. It's perfectly OK to wait for ftpmaster response and leave the package in new as is. I have added rtax to the Debian Med bio task as you can see on the according tasks page.[1] Concerning packaging: For packaging itself, i think i don't need help- i already did some packaging work (for some local packages used ad work) and i have a very competent sponsor which helped me to create my packages. We do absolutely not want to disrupt your workflow / relation to your sponsor. It is just an offer since in some cases it has turned out to be hard to find a sponsor. I will try to get my work into alioth/debian-med. That would be great and hopefully helpfull also for your work. I will contact debian-med when I am getting stuck, so be prepared for some questions :-) That's what we are keen on. :-) Kind regards Andreas. [1] http://debian-med.alioth.debian.org/tasks/bio#rtax Am 28.09.2013 um 21:51 schrieb Andreas Tille andr...@an3as.eu: Hi Simon, this package is a perfect target for Debian Med but I noticed you are not yet a member of the Alioth team. Since I'm currently on vaccation and not frequently online I just added skainz-guest to the Debian Med team simply assuming you might consider using Debian Med VCS as described in our team policy[1]. I hope you agree with this and please let us know if you need any help with the packaging. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130923095603.26061.18627.report...@zidpc9027.tu-graz.ac.at -- http://fam-tille.de -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hi Simon, this package is a perfect target for Debian Med but I noticed you are not yet a member of the Alioth team. Since I'm currently on vaccation and not frequently online I just added skainz-guest to the Debian Med team simply assuming you might consider using Debian Med VCS as described in our team policy[1]. I hope you agree with this and please let us know if you need any help with the packaging. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130923095603.26061.18627.report...@zidpc9027.tu-graz.ac.at -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Am 2013-09-25 08:32, schrieb Thomas Weber: Hi Simon, some nitpicking: On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Please shorten the short description. Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. I would drop the first sentence - this sounds a lot like the first sentence in a scientific paper. Best, Thomas Hi! Thank you for you suggestions. Well, i already uploaded (actually, my sponsor) the package to the NEW queue. Currently it is sitting there. Now I'm unsure as to make the changes you suggested, and quickly reupload or just wait to get the package uploaded and then, after it is not new to Debian anymore, upload the fixed version. Any suggestions? I just want to minimize the work for the FTP-Masters caused by my new package. Regards, Simon -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Hi Simon, some nitpicking: On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Please shorten the short description. Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. I would drop the first sentence - this sounds a lot like the first sentence in a scientific paper. Best, Thomas -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
Package: wnpp Severity: wishlist Owner: Simon Kainz si...@familiekainz.at * Package name: rtax Version : 0.983 Upstream Author : David A. W. Soergel David A. W. Soergel * URL : David A. W. Soergel * License : BSD Programming Lang: Perl Description : Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene Short-read technologies for microbial community profiling are increasingly popular, yet previous techniques for assigning taxonomy to paired-end reads perform poorly. RTAX provides rapid taxonomic assignments of paired-end reads using a consensus algorithm. This tool is an optional dependency for qiime(which is already packaged) and it would be great to have it packaged for Debian. Regards, Simon -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
