Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-04-01 Thread Aleksandar Zlicic
Hello,

The cause of this issue is an error in function bam_get_seq(),
or to be more precise, function's implementation for non-intel architectures.

Function bam_get_seq is used for reading data from alignment blocks
in BAM files, block by block.
In special cases, when the alignment block being read is the last block in BAM 
file,
and the block has no cigar operations and segment sequence stored inside of it,
function incorrectly detects end-of-file.
In that case,
block has actually been successfully read,
but because of erroneous end-of-file detection,
it isn't written to output file in SAM format.

Attached patch fixes this issue.
It is tested on mips, mipsel and powerpc.

Best Regards
Aleksandar Zlicic
--- a/io_lib/bam.c
+++ b/io_lib/bam.c
@@ -1636,7 +1636,7 @@
 /* The remainder, word aligned */
 blk_size = blk_ret;
 
-if ((blk_ret = bam_read(b, (char *)bam_cigar(bs), blk_size+4)) == 0)
+if (((blk_ret = bam_read(b, (char *)bam_cigar(bs), blk_size+4)) == 0)  blk_size!=0)
 	return 0;
 
 if (blk_size+4 != blk_ret) {


Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-31 Thread Aníbal Monsalve Salazar
On Mon, 2014-03-31 14:06:49 +0900, Charles Plessy wrote:
 
 staden-io-lib is going to be removed from Testing because of a RC bug
 that is solved in Sid but can not migrate as long as the package still
 fails to build o non-PC architectures.
 
 My original plan was to remove staden-io-lib from [armel armhf mips
 mipsel powerpc s390x ia64], but this was cancelled as you voluntered
 to fix the build failure (http://bugs.debian.org/736565#10).
 
 Do you know when you will be able to fix the package ?  If it is not
 likely to happen in the short term, I would like to follow my original
 plan and remove it from the architectures where it does not build.

We have staden-io-lib in a our to-do list. We haven't forgotten it.

diff -up ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam 
./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
--- ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam
2014-03-09 09:28:59.776817773 +
+++ ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
2014-03-09 09:29:00.120803439 +
@@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0   
0   *   *
 A1 16  yy  4   1   *   *   0   0   *   
*
 A2 16  yy  4   1   *   *   0   0   *   
*
 A3 16  yy  4   1   *   *   0   0   *   
*
-A4 16  yy  4   1   *   *   0   0   *   
*

The missing line in xx#minimal.full.bam.sam is still causing the failure
with the new version 1.13.3.

Do you have the upstream email address?

I tried to email usptream and the email address in debian/copyright
wasn't that of upstream.


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Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-31 Thread Aníbal Monsalve Salazar
On Mon, 2014-03-31 18:03:12 +1100, Aníbal Monsalve Salazar wrote:
 On Mon, 2014-03-31 14:06:49 +0900, Charles Plessy wrote:
 
 staden-io-lib is going to be removed from Testing because of a RC bug
 that is solved in Sid but can not migrate as long as the package still
 fails to build o non-PC architectures.
 
 My original plan was to remove staden-io-lib from [armel armhf mips
 mipsel powerpc s390x ia64], but this was cancelled as you voluntered
 to fix the build failure (http://bugs.debian.org/736565#10).
 
 Do you know when you will be able to fix the package ?  If it is not
 likely to happen in the short term, I would like to follow my original
 plan and remove it from the architectures where it does not build.
 
 We have staden-io-lib in a our to-do list. We haven't forgotten it.
 
 diff -up ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam 
 ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
 --- ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam  
   2014-03-09 09:28:59.776817773 +
 +++ ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam  
   2014-03-09 09:29:00.120803439 +
 @@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0 
   0   *   *
  A1 16  yy  4   1   *   *   0   0   * 
   *
  A2 16  yy  4   1   *   *   0   0   * 
   *
  A3 16  yy  4   1   *   *   0   0   * 
   *
 -A4 16  yy  4   1   *   *   0   0   * 
   *
 
 The missing line in xx#minimal.full.bam.sam is still causing the failure
 with the new version 1.13.3.

Version 1.13.5.

I was looking at the wrong package version.

http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.5-1_mipsel.log.bz2

The build log extract is below. The web address of the complete build
log is above.

make[2]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.5/tests'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.5'
dh_auto_test: make -j1 check returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: user script /var/cache/pbuilder/build//30984/tmp/hooks/C10cmds starting
+ find -name xx#minimal.full.sam
+ find -name xx#minimal.full.bam.sam
+ diff -up ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.sam 
./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.bam.sam
--- ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.sam
2014-03-31 07:56:46.008964719 +
+++ ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.bam.sam
2014-03-31 07:56:46.348950575 +
@@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0   
0   *   *
 A1 16  yy  4   1   *   *   0   0   *   
*
 A2 16  yy  4   1   *   *   0   0   *   
*
 A3 16  yy  4   1   *   *   0   0   *   
*
-A4 16  yy  4   1   *   *   0   0   *   
*
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//30984 and its subdirectories

 
 Do you have the upstream email address?
 
 I tried to email usptream and the email address in debian/copyright
 wasn't that of upstream.


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Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-31 Thread Dejan Latinovic

Hello,

we have been investigating this issue.

We will have a patch that fixes the issue in a day or two.


Regards,
Dejan



From: Anibal Monsalve Salazar [ani...@master.debian.org] on behalf of Aníbal 
Monsalve Salazar [ani...@debian.org]
Sent: Monday, March 31, 2014 10:26 AM
To: Charles Plessy
Cc: 736...@bugs.debian.org; Dejan Latinovic; debian-m...@lists.debian.org
Subject: Re: Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC 
architectures: FAIL: scram_mt.test

On Mon, 2014-03-31 18:03:12 +1100, Aníbal Monsalve Salazar wrote:
 On Mon, 2014-03-31 14:06:49 +0900, Charles Plessy wrote:

 staden-io-lib is going to be removed from Testing because of a RC bug
 that is solved in Sid but can not migrate as long as the package still
 fails to build o non-PC architectures.

 My original plan was to remove staden-io-lib from [armel armhf mips
 mipsel powerpc s390x ia64], but this was cancelled as you voluntered
 to fix the build failure (http://bugs.debian.org/736565#10).

 Do you know when you will be able to fix the package ?  If it is not
 likely to happen in the short term, I would like to follow my original
 plan and remove it from the architectures where it does not build.

 We have staden-io-lib in a our to-do list. We haven't forgotten it.

 diff -up ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam 
 ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
 --- ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam  
   2014-03-09 09:28:59.776817773 +
 +++ ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam  
   2014-03-09 09:29:00.120803439 +
 @@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0 
   0   *   *
  A1 16  yy  4   1   *   *   0   0   * 
   *
  A2 16  yy  4   1   *   *   0   0   * 
   *
  A3 16  yy  4   1   *   *   0   0   * 
   *
 -A4 16  yy  4   1   *   *   0   0   * 
   *

 The missing line in xx#minimal.full.bam.sam is still causing the failure
 with the new version 1.13.3.

Version 1.13.5.

I was looking at the wrong package version.

http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.5-1_mipsel.log.bz2

The build log extract is below. The web address of the complete build
log is above.

make[2]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.5/tests'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.5'
dh_auto_test: make -j1 check returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: user script /var/cache/pbuilder/build//30984/tmp/hooks/C10cmds starting
+ find -name xx#minimal.full.sam
+ find -name xx#minimal.full.bam.sam
+ diff -up ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.sam 
./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.bam.sam
--- ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.sam
2014-03-31 07:56:46.008964719 +
+++ ./tmp/buildd/staden-io-lib-1.13.5/tests/test.out/xx#minimal.full.bam.sam
2014-03-31 07:56:46.348950575 +
@@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0   
0   *   *
 A1 16  yy  4   1   *   *   0   0   *   
*
 A2 16  yy  4   1   *   *   0   0   *   
*
 A3 16  yy  4   1   *   *   0   0   *   
*
-A4 16  yy  4   1   *   *   0   0   *   
*
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//30984 and its subdirectories


 Do you have the upstream email address?

 I tried to email usptream and the email address in debian/copyright
 wasn't that of upstream.

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To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org



Bug#736565: [Debian-med-packaging] Bug#736565: Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-31 Thread Charles Plessy
Le Mon, Mar 31, 2014 at 06:03:12PM +1100, Aníbal Monsalve Salazar a écrit :
 
 Do you have the upstream email address?

Hi again, and thanks to you and Dejan for your prompt answers.

You can contact James Bonfield j...@sanger.ac.uk directly, but he is also
responsive through the upstream bug tracker on SourceForge:
http://sourceforge.net/p/staden/bugs/, which is a better place for providing
patches.

Have a nice day,

Charles

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-30 Thread Charles Plessy
Dear Aníbal and mips-port team,

staden-io-lib is going to be removed from Testing because of a RC bug that is
solved in Sid but can not migrate as long as the package still fails to build
o non-PC architectures.

My original plan was to remove staden-io-lib from [armel armhf mips mipsel
powerpc s390x ia64], but this was cancelled as you voluntered to fix
the build failure (http://bugs.debian.org/736565#10).

Do you know when you will be able to fix the package ?  If it is not likely to
happen in the short term, I would like to follow my original plan and remove it
from the architectures where it does not build.

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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Bug#736565: [Debian-med-packaging] Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-15 Thread Charles Plessy
Le Sat, Mar 15, 2014 at 01:32:40PM +0900, Charles Plessy a écrit :
 Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
  On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
   
   Speaking of Upstream, I see a new release, version 1.13.5.  Would you
   like me to upload it ?
  
  Yes, please.
 
 Uploaded !  Sorry for the delay.

By the way, my build log is available here:

https://buildd.debian.org/status/fetch.php?pkg=staden-io-libarch=amd64ver=1.13.5-1stamp=1394935300

Cheers,

-- 
Charles


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-14 Thread Charles Plessy
Le Mon, Mar 10, 2014 at 12:13:34AM +1100, Aníbal Monsalve Salazar a écrit :
 On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
  
  Speaking of Upstream, I see a new release, version 1.13.5.  Would you
  like me to upload it ?
 
 Yes, please.

Uploaded !  Sorry for the delay.

Charles

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-09 Thread Aníbal Monsalve Salazar
On Sat, Feb 15, 2014 at 03:26:19PM +1100, Aníbal Monsalve Salazar wrote:
 retitle 736565 FTBFS on non-PC architectures: FAIL: scram_mt.test
 reassign 736565 staden-io-lib 1.13.3-2
 severity 736565 serious
 user debian-m...@lists.debian.org
 usertags 736565 + mips-port
 stop
 
 On Sat, Jan 25, 2014 at 09:10:28AM +0900, Charles Plessy wrote:
 Package: ftp.debian.org
 Severity: normal
 
 please remove staden-io-lib and its dependancies on all
 architectures other i386-any and amd64-any.  Regression tests fail
 and there is no sign of support or use upstream and elsewhere on
 these architectures.
 
 The mips-port team has staden-io-lib in its plan to fix this failure.

Hello Alexander and Charles,

The regression test fails because xx#minimal.full.sam has one extra line
at the end when it's compared to xx#minimal.full.bam.sam.

The extra line is:

A4  16  yy  4   1   *   *   0   0   *   
*

The build logs for mips and mipsel are available at:

http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.3-2_mips.log.bz2
http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.3-2_mipsel.log.bz2

Below is an extract of the mipsel build log.

Is there more information that we could provide or other test that we
could run on mips/mipsel?

Meanwhile, we'll continue to see how we can fix this bug.

Regards,

Anibal

 ../progs/scramble -t4 test.out/xx#minimal.full.bam test.out/tmp.sam
Total time=0.008268
Wait  time=0.007723
6% utilisation
cmp test.out/xx#minimal.full.sam test.out/xx#minimal.full.bam.sam
cmp: EOF on test.out/xx#minimal.full.bam.sam
FAIL: scram_mt.test
===
2 of 7 tests failed
===
make[3]: *** [check-TESTS] Error 1
make[3]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3/tests'
make[2]: *** [check-am] Error 2
make[2]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3/tests'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3'
dh_auto_test: make -j1 check returned exit code 2
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: user script /var/cache/pbuilder/build//2492/tmp/hooks/C10cmds starting
+ find -name xx#minimal.full.sam
+ find -name xx#minimal.full.bam.sam
+ diff -up ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam 
./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
--- ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam
2014-03-09 09:30:37.092473348 +
+++ ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
2014-03-09 09:30:37.568473338 +
@@ -10,4 +10,3 @@ A016  yy  4   1   *   *   0   
0   *   *
 A1 16  yy  4   1   *   *   0   0   *   
*
 A2 16  yy  4   1   *   *   0   0   *   
*
 A3 16  yy  4   1   *   *   0   0   *   
*
-A4 16  yy  4   1   *   *   0   0   *   
*
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//2492 and its subdirectories


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-09 Thread Aníbal Monsalve Salazar
On Sun, Mar 09, 2014 at 10:10:28AM +, Aníbal Monsalve Salazar wrote:
 Hello Alexander and Charles,
 
 The regression test fails because xx#minimal.full.sam has one extra line
 at the end when it's compared to xx#minimal.full.bam.sam.
 
 The extra line is:
 
 A416  yy  4   1   *   *   0   0   *   
 *
 
 The build logs for mips and mipsel are available at:
 
 http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.3-2_mips.log.bz2
 http://people.debian.org/~anibal/staden-io-lib/staden-io-lib_1.13.3-2_mipsel.log.bz2
 
 Below is an extract of the mipsel build log.
 
 Is there more information that we could provide or other test that we
 could run on mips/mipsel?
 
 Meanwhile, we'll continue to see how we can fix this bug.
 
 Regards,
 
 Anibal
 
  ../progs/scramble -t4 test.out/xx#minimal.full.bam test.out/tmp.sam
 Total time=0.008268
 Wait  time=0.007723
 6% utilisation
 cmp test.out/xx#minimal.full.sam test.out/xx#minimal.full.bam.sam
 cmp: EOF on test.out/xx#minimal.full.bam.sam
 FAIL: scram_mt.test
 ===
 2 of 7 tests failed
 ===
 make[3]: *** [check-TESTS] Error 1
 make[3]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3/tests'
 make[2]: *** [check-am] Error 2
 make[2]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3/tests'
 make[1]: *** [check-recursive] Error 1
 make[1]: Leaving directory `/tmp/buildd/staden-io-lib-1.13.3'
 dh_auto_test: make -j1 check returned exit code 2
 make: *** [build] Error 2
 dpkg-buildpackage: error: debian/rules build gave error exit status 2
 E: Failed autobuilding of package
 I: user script /var/cache/pbuilder/build//2492/tmp/hooks/C10cmds starting
 + find -name xx#minimal.full.sam
 + find -name xx#minimal.full.bam.sam
 + diff -up 
 ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam 
 ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam
 --- ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.sam  
 2014-03-09 09:30:37.092473348 +
 +++ ./tmp/buildd/staden-io-lib-1.13.3/tests/test.out/xx#minimal.full.bam.sam  
 2014-03-09 09:30:37.568473338 +
 @@ -10,4 +10,3 @@ A0  16  yy  4   1   *   *   0   
 0   *   *
  A1   16  yy  4   1   *   *   0   0   *   
 *
  A2   16  yy  4   1   *   *   0   0   *   
 *
  A3   16  yy  4   1   *   *   0   0   *   
 *
 -A4   16  yy  4   1   *   *   0   0   *   
 *
 I: unmounting dev/pts filesystem
 I: unmounting run/shm filesystem
 I: unmounting proc filesystem
 I: cleaning the build env 
 I: removing directory /var/cache/pbuilder/build//2492 and its subdirectories

Alexander couldn't help. Maybe Andreas or Charles? :)


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-09 Thread Charles Plessy
Le Sun, Mar 09, 2014 at 10:10:28AM +, Aníbal Monsalve Salazar a écrit :
 
 The regression test fails because xx#minimal.full.sam has one extra line
 at the end when it's compared to xx#minimal.full.bam.sam.
 
 The extra line is:
 
 A416  yy  4   1   *   *   0   0   *   
 *

Hi Aníbal,

The BAM format is the binary representation of the SAM format, for alignment of
nucleotide sequences on a reference genome.  I guess that the test suite checks
that the tool's output is the same in both formats, by converting BAM to SAM
and comparing the two SAM files.  Debian also distributes the 'samtools'
program, that can do this conversion as well.

$ samtools view -h xx#minimal.full.bam
@PG ID:scramble PN:scramble VN:1.13.3   
CL:/tmp/staden-io-lib-1.13.3/progs/.libs/lt-scramble -t4 ./data/xx#minimal.sam 
test.out/xx#minimal.bam 
@PG ID:scramble.1   PN:scramble PP:scramble VN:1.13.3   
CL:/tmp/staden-io-lib-1.13.3/progs/.libs/lt-scramble -t4 -r ./data/xx.fa 
test.out/xx#minimal.bam test.out/xx#minimal.full.cram 
@PG ID:scramble.2   PN:scramble PP:scramble.1   VN:1.13.3   
CL:/tmp/staden-io-lib-1.13.3/progs/.libs/lt-scramble -t4 -O bam 
test.out/xx#minimal.full.cram 
@SQ SN:xx   LN:20   M5:bbf4de6d8497a119dda6e074521643dc 
UR:/tmp/staden-io-lib-1.13.3/tests/./data/xx.fa
@SQ SN:yy   LN:20   M5:bbf4de6d8497a119dda6e074521643dc 
UR:/tmp/staden-io-lib-1.13.3/tests/./data/xx.fa
a0  16  xx  4   1   10H *   0   0   *   
*
a1  16  xx  4   1   10H *   0   0   *   
*
a2  16  xx  4   1   5H10M5H *   0   0   
AAATTT  *
A0  16  yy  4   1   *   *   0   0   *   
*
A1  16  yy  4   1   *   *   0   0   *   
*
A2  16  yy  4   1   *   *   0   0   *   
*
A3  16  yy  4   1   *   *   0   0   *   
*
A4  16  yy  4   1   *   *   0   0   *   
*

Missing a line on MIPS definitely looks like a bug.  This said, it works on
amd64 (at least the test suite) and I doubt that there are users for the
staden-io-lib on MIPS.  Have you tried to contact the upstream author ?

Speaking of Upstream, I see a new release, version 1.13.5.  Would you like me
to upload it ?

Cheers,

Charles

-- 
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-03-09 Thread Aníbal Monsalve Salazar
On Sun, Mar 09, 2014 at 07:58:25PM +0900, Charles Plessy wrote:
 
 Missing a line on MIPS definitely looks like a bug.  This said, it
 works on amd64 (at least the test suite) and I doubt that there are
 users for the staden-io-lib on MIPS.  Have you tried to contact the
 upstream author ?

Not yet.

 Speaking of Upstream, I see a new release, version 1.13.5.  Would you
 like me to upload it ?

Yes, please.


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Bug#736565: FTBFS on non-PC architectures: FAIL: scram_mt.test

2014-02-14 Thread Aníbal Monsalve Salazar
retitle 736565 FTBFS on non-PC architectures: FAIL: scram_mt.test
reassign 736565 staden-io-lib 1.13.3-2
severity 736565 serious
user debian-m...@lists.debian.org
usertags 736565 + mips-port
stop

On Sat, Jan 25, 2014 at 09:10:28AM +0900, Charles Plessy wrote:
 Package: ftp.debian.org
 Severity: normal
 
 Dear FTP team,
 
 please remove staden-io-lib and its dependancies on all architectures
 other i386-any and amd64-any.  Regression tests fail and there is no
 sign of support or use upstream and elsewhere on these architectures.
 
 Have a nice week-end,
 
 -- 
 Charles

Hello Charles,

The mips-port team has staden-io-lib in its plan to fix this failure.

Regards,

Aníbal


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