Bug#758987: qiime: Can't upgrade - pynast 1.2.2 does not exist
Package: qiime Version: 1.8.0+dfsg-2 Severity: normal Dear Maintainer Folks, I am trying to upgrade qiime to 1.8.0+dfsg-4, but I get: qiime : Depends: pynast (= 1.2.2) but 1.2-1 is to be installed and: # apt-show-versions -a pynast pynast 1.2-1 install ok installed pynast 1.1-3 stable ftp.debian.org pynast 1.2-1 testing ftp.debian.org pynast 1.2-1 unstable ftp.debian.org pynast/testing uptodate 1.2-1 (which is also what packages.debian.org reports) I also see the following on packages.debian.org: testing migration excuses: 9 days old (needed 5 days) qiime/i386 unsatisfiable Depends: pynast (= 1.2.2) qiime/amd64 unsatisfiable Depends: pynast (= 1.2.2) qiime/armel unsatisfiable Depends: pynast (= 1.2.2) qiime/armhf unsatisfiable Depends: pynast (= 1.2.2) qiime/kfreebsd-amd64 unsatisfiable Depends: pynast (= 1.2.2) qiime/kfreebsd-i386 unsatisfiable Depends: pynast (= 1.2.2) qiime/mips unsatisfiable Depends: pynast (= 1.2.2) qiime/mipsel unsatisfiable Depends: pynast (= 1.2.2) qiime/powerpc unsatisfiable Depends: pynast (= 1.2.2) qiime/s390x unsatisfiable Depends: pynast (= 1.2.2) Valid candidate so perhaps you already know about this. Thanks much/best, -- Steve Lane System Administrator, Scientific Computing Joint BioEnergy Institute Lawrence Berkeley National Laboratory -- System Information: Debian Release: 7.6 APT prefers stable APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/64 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages qiime depends on: ii king2.21.120420-2 ii libc6 2.19-9 ii libffi6 3.1-2 ii libgmp102:6.0.0+dfsg-6 ii pynast 1.2-1 ii python 2.7.8-1 ii python-biom-format 2.1+dfsg-1 ii python-cogent 1.5.3-2 ii python-qcli 0.1.0-1 Versions of packages qiime recommends: pn ampliconnoise none ii blast2 1:2.2.26.20120620-2 pn cd-hit none pn chimeraslayer none pn fasttree none pn infernal none ii libjs-jquery 1.7.2+dfsg-1 ii muscle 1:3.8.31-1 ii python-matplotlib 1.3.1-2 pn python-mpi4py none ii python-numpy 1:1.8.2-1 Versions of packages qiime suggests: pn cytoscape none pn rdp-classifier none pn t-coffeenone pn torque-client none -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#758987: qiime: Can't upgrade - pynast 1.2.2 does not exist
Hi Steve, thanks for your bug report. I was woncering myself why pynast 1.2.2 is not yet available. At first I thought I would have missed the final upload and uploaded again - than I notices that the package is in new queue since I renamed the source package to reflect the binary name (source was python-pynast for no good reason and I renamed it to pynast). I guess it will be available soon and will close the bug than. Kind regards Andreas. PS: Thorsten, a similarly simple package is r-cran-qtl which is also only renamed (from qtl). On Sat, Aug 23, 2014 at 07:35:06AM -0700, Steve Lane wrote: Package: qiime Version: 1.8.0+dfsg-2 Severity: normal Dear Maintainer Folks, I am trying to upgrade qiime to 1.8.0+dfsg-4, but I get: qiime : Depends: pynast (= 1.2.2) but 1.2-1 is to be installed and: # apt-show-versions -a pynast pynast 1.2-1 install ok installed pynast 1.1-3 stable ftp.debian.org pynast 1.2-1 testing ftp.debian.org pynast 1.2-1 unstable ftp.debian.org pynast/testing uptodate 1.2-1 (which is also what packages.debian.org reports) I also see the following on packages.debian.org: testing migration excuses: 9 days old (needed 5 days) qiime/i386 unsatisfiable Depends: pynast (= 1.2.2) qiime/amd64 unsatisfiable Depends: pynast (= 1.2.2) qiime/armel unsatisfiable Depends: pynast (= 1.2.2) qiime/armhf unsatisfiable Depends: pynast (= 1.2.2) qiime/kfreebsd-amd64 unsatisfiable Depends: pynast (= 1.2.2) qiime/kfreebsd-i386 unsatisfiable Depends: pynast (= 1.2.2) qiime/mips unsatisfiable Depends: pynast (= 1.2.2) qiime/mipsel unsatisfiable Depends: pynast (= 1.2.2) qiime/powerpc unsatisfiable Depends: pynast (= 1.2.2) qiime/s390x unsatisfiable Depends: pynast (= 1.2.2) Valid candidate so perhaps you already know about this. Thanks much/best, -- Steve Lane System Administrator, Scientific Computing Joint BioEnergy Institute Lawrence Berkeley National Laboratory -- System Information: Debian Release: 7.6 APT prefers stable APT policy: (990, 'stable'), (900, 'testing'), (800, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/64 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages qiime depends on: ii king2.21.120420-2 ii libc6 2.19-9 ii libffi6 3.1-2 ii libgmp102:6.0.0+dfsg-6 ii pynast 1.2-1 ii python 2.7.8-1 ii python-biom-format 2.1+dfsg-1 ii python-cogent 1.5.3-2 ii python-qcli 0.1.0-1 Versions of packages qiime recommends: pn ampliconnoise none ii blast2 1:2.2.26.20120620-2 pn cd-hit none pn chimeraslayer none pn fasttree none pn infernal none ii libjs-jquery 1.7.2+dfsg-1 ii muscle 1:3.8.31-1 ii python-matplotlib 1.3.1-2 pn python-mpi4py none ii python-numpy 1:1.8.2-1 Versions of packages qiime suggests: pn cytoscape none pn rdp-classifier none pn t-coffeenone pn torque-client none -- no debconf information ___ Debian-med-packaging mailing list debian-med-packag...@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
Bug#758987: qiime: Can't upgrade - pynast 1.2.2 does not exist
Hi Andreas, Sounds good. Thanks very much/best, -- Steve Lane System Administrator, Scientific Computing Joint BioEnergy Institute Lawrence Berkeley National Laboratory On Aug 23 19:03, Andreas Tille wrote: Hi Steve, thanks for your bug report. I was woncering myself why pynast 1.2.2 is not yet available. At first I thought I would have missed the final upload and uploaded again - than I notices that the package is in new queue since I renamed the source package to reflect the binary name (source was python-pynast for no good reason and I renamed it to pynast). I guess it will be available soon and will close the bug than. Kind regards Andreas. PS: Thorsten, a similarly simple package is r-cran-qtl which is also only renamed (from qtl). -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org
