Source: voxbo
Version: 1.8.5~svn1246-1.1
Severity: important
Tags: upstream
Dear Maintainer,
Your package fails to build with GSL 2:
fitOneOverF.cpp: In function 'VB_Vector* curvefit(VB_Vector*, VB_Vector*,
VB_Vector*, double, double, double, double, const char*, bool)':
fitOneOverF.cpp:205:26: error: 'struct gsl_multifit_fdfsolver' has no member
named 'J'
gsl_multifit_covar (s->J, 0.0, covar);
^
fitOneOverF.cpp: In function 'VB_Vector* curvefit12(VB_Vector*, VB_Vector*,
VB_Vector*, double, double, double, const char*, bool)':
fitOneOverF.cpp:398:26: error: 'struct gsl_multifit_fdfsolver' has no member
named 'J'
gsl_multifit_covar (s->J, 0.0, covar);
^
This needs to be fixed for the ongoing gsl transition (#804246).
The full build log is attached, as is a patch to update the build
dependencies for GSL 2 (changing libgsl0-dev to libgsl-dev).
Kind Regards,
Bas
I: using cowbuilder as pbuilder
dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev libqt4-dev libxi-dev
W: Unmet build-dependency in source
dpkg-buildpackage: source package voxbo
dpkg-buildpackage: source version 1.8.5~svn1246-1.2
dpkg-buildpackage: source distribution UNRELEASED
dpkg-buildpackage: source changed by Bas Couwenberg
dpkg-source --before-build voxbo-1.8.5~svn1246
dpkg-checkbuilddeps: Unmet build dependencies: libgsl-dev libqt4-dev libxi-dev
dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied; aborting
dpkg-buildpackage: warning: (Use -d flag to override.)
dpkg-buildpackage: warning: this is currently a non-fatal warning with -S, but
will probably become fatal in the future
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make[1]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246'
for dir in lib vbwidgets fileformats munge stats crunch stand_alone utils
resample gdscript scheduler scripts qtglm vbview vbsequence qtvlsm client
server dbutil ; do make -C $dir clean ; done
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp test
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/lib'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp libvbwidgets.a
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/vbwidgets'
make[2]: Entering directory
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp dcmsplit dicominfo ffinfo vbrename analyzeinfo niftiinfo
make[2]: Leaving directory
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/fileformats'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp tes2cub vb2cub vb2img vb2imgs vb2tes vb2vmp vbconv vbmunge vbcmp
vbshift vbsmooth vbmaskmunge vecsplit vbinterpolate vbthresh vbprep vbbatch
sumrfx calcperf cub2pngs setorigin fillmask vbhdr vbsim vbregion vborient vbi
vbmerge4d vbvec2hdr vbse vbmaskinfo vboverlap vbimagemunge vbim vbfilter
vbmaskcompare vbtool
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/munge'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
rm -f vbvolregress vbmakeregress vbstatmap vbdumpstats glminfo vbperminfo vbxts
vbtmap vbmakeresid vbfdr vbpermvec vbscoregen vbmap a.out *.o *.so *~ *.exe *.a
core.[0-9]* *.hlp.h *.moc.h moc_*.cpp rsrc.cpp
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stats'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp vbmm2 vbmakeglm vbmakefilter
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/crunch'
make[2]: Entering directory
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp calcgs calcps sliceacq tesplit tesjoin makematkg makematk comptraces
permstep vbregress vbpermmat
make[2]: Leaving directory
'/home/bas/tmp/debian/voxbo-1.8.5~svn1246/stand_alone'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp vbfit vbcfx txt2num gcheck sortmvpm
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/utils'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h moc_*.cpp
rsrc.cpp resample
make[2]: Leaving directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/resample'
make[2]: Entering directory '/home/bas/tmp/debian/voxbo-1.8.5~svn1246/gdscript'
rm -f a.out *.o *.so *~ *.exe *.a core.[0-9]* *.hlp.h *.moc.h
