Package: ncbi-vdb
Version: 2.7.0+dfsg-4
Severity: normal
Tags: patch
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu zesty ubuntu-patch
Dear Maintainer,
ncbi-vdb currently fails to build from source on the i386 architecture because
there's a discrepancy in architecture naming.
In Ubuntu, the attached patch was applied to achieve the following:
* debian/rules: Use wildcard instead of $(CPU) in install logic. Fixes FTBFS
on i386.
Thanks for considering the patch.
Logan Rosen
-- System Information:
Debian Release: stretch/sid
APT prefers yakkety-updates
APT policy: (500, 'yakkety-updates'), (500, 'yakkety-security'), (500,
'yakkety')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.4.0-21-generic (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL
set to en_US.utf8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru ncbi-vdb-2.7.0+dfsg/debian/rules ncbi-vdb-2.7.0+dfsg/debian/rules
--- ncbi-vdb-2.7.0+dfsg/debian/rules 2016-09-01 05:49:14.000000000 -0400
+++ ncbi-vdb-2.7.0+dfsg/debian/rules 2016-11-04 01:20:41.000000000 -0400
@@ -58,30 +58,30 @@
--multiarch \
--devunversioned \
--exclude-la \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-ngs-c++.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkapp.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkapp-norsrc.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkff.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libktst.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkxfs.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkxml.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libload.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libtui.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libtui_cpp.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-ngs-c++.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp-norsrc.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkff.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libktst.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxfs.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxml.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libload.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui_cpp.a usr/lib/$(BUILDTYPE) \
--movedev interfaces usr/include \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-vdb.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-vdb.so
mv debian/libncbi-vdb-dev/usr/include/interfaces debian/libncbi-vdb-dev/usr/include/$(DEBPKGNAME)
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--override s/libhdf5_serial[0-9]*-dev/libhdf5-dev/ \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libkdf5.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libkdf5.so
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-wvdb.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-wvdb.so
find debian/lib* -name .gitignore -delete
# move schemata from development packages to library packages since these are used in executables
mkdir -p $(SCHEMADIR)
