Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

2017-10-01 Thread Afif Elghraoui


على السبت 30 أيلول 2017 ‫21:52، كتب peter green:
> My understanding is that the new version of python 2.7 removed a module 
> called "_PyFPE" and that C extensions referencing symbols from this module 
> need to be rebuilt. This has been enforced by breaks in the python2.7 
> package. Your package is on said list.
> 
> So for the new python2.7 to migrate to testing the FTBFS in python-pysam 
> needs to be fixed.

Okay, I've just skipped that one failing test and uploaded the new
version in order to move things along.

regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name



Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

2017-09-30 Thread peter green

On 30/09/17 21:43, Afif Elghraoui wrote:

The new upstream version is the solution to this problem, but we've been
going back and forth over issues  (fixing one, revealing another) in
updating the package. I'll see if I can do it today, but I don't
understand why this should be blocking python itself. It's not python
that broke this package-- it was updating some of its other dependencies
(htslib/samtools).

My understanding is that the new version of python 2.7 removed a module called 
"_PyFPE" and that C extensions referencing symbols from this module need to be 
rebuilt. This has been enforced by breaks in the python2.7 package. Your package is on 
said list.

So for the new python2.7 to migrate to testing the FTBFS in python-pysam needs 
to be fixed.



Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

2017-09-30 Thread Afif Elghraoui


على السبت 30 أيلول 2017 ‫16:43، كتب Afif Elghraoui:
>  I'll see if I can do it today,

I see Andreas Tille is on top of this. The current issue right now is
this upstream bug we encounter when trying to build the latest upstream
version:

https://github.com/pysam-developers/pysam/issues/542

regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name



Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

2017-09-30 Thread Afif Elghraoui
Hi, Peter,

على السبت 30 أيلول 2017 ‫09:18، كتب peter green:
> Any ETA on fixing this? it is blocking the migration of python2.7 to testing.
> 
> I notice that the package tracker claims that there is a new upstream version 
> available.
> 

The new upstream version is the solution to this problem, but we've been
going back and forth over issues  (fixing one, revealing another) in
updating the package. I'll see if I can do it today, but I don't
understand why this should be blocking python itself. It's not python
that broke this package-- it was updating some of its other dependencies
(htslib/samtools).

regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name