On 10/31/2017 03:05 PM, Olivier Sallou wrote: > testng maven definition needs to be modified in build.graddle to match > testng debian pom. > > Following patch fix the compilation for tests: > > --- a/build.gradle > +++ b/build.gradle > @@ -32,7 +32,7 @@ > compile 'com.github.samtools:htsjdk:' + htsjdkVersion > //tools dependency for doclet requires sdk devel > compile(files(((URLClassLoader) > ToolProvider.getSystemToolClassLoader()).getURLs())) > - testCompile 'org.testng:testng:6.9.10' > + testCompile 'org.testng:testng:debian' > } > > sourceCompatibility = 1.8 > > > however, all tests fail with the same issue than htsjdk when using > testng in graddle > > Cannot nest operations in the same thread. Each nested operation must > run in its own thread. > java.lang.UnsupportedOperationException: Cannot nest operations in the > same thread. Each nested operation must run in its own thread. of course, we could easilly (though need to add patch anyway) to skip testing, and wait to find a way to fix this gradle+testng issue, but could lead to invalid packages.... > > I have no idea why (not using gradle), and asked to java team but got > not answer for the moment. > > Olivier > > > On 10/30/2017 08:26 PM, Lucas Nussbaum wrote: >> Source: picard-tools >> Version: 2.8.1+dfsg-2 >> Severity: serious >> Tags: buster sid >> User: debian...@lists.debian.org >> Usertags: qa-ftbfs-20171030 qa-ftbfs >> Justification: FTBFS on amd64 >> >> Hi, >> >> During a rebuild of all packages in sid, your package failed to build on >> amd64. >> >> Relevant part (hopefully): >>> make[1]: Entering directory '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg' >>> # Tests do not work with locales with a different decimal separator >>> # (for example ',') >>> env LC_ALL=C \ >>> dh_auto_build -- test >>> mkdir -p .gradle/init.d >>> cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ >>> gradle --info --console plain --offline --stacktrace --no-daemon >>> --refresh-dependencies --gradle-user-home .gradle -Duser.home=. >>> -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 >>> --parallel --max-workers=16 test >>> Initialized native services in: >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/native >>> To honour the JVM settings for this build a new JVM will be forked. Please >>> consider using the daemon: >>> https://docs.gradle.org/3.2.1/userguide/gradle_daemon.html. >>> Starting daemon process: workingDir = >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1, daemonArgs: >>> [/usr/lib/jvm/java-8-openjdk-amd64/bin/java, -XX:MaxPermSize=256m, >>> -XX:+HeapDumpOnOutOfMemoryError, -Xmx1024m, -Dfile.encoding=UTF-8, >>> -Duser.country=US, -Duser.language=en, -Duser.variant, -cp, >>> /usr/share/gradle/lib/gradle-launcher-3.2.1.jar, >>> org.gradle.launcher.daemon.bootstrap.GradleDaemon, 3.2.1] >>> Starting process 'Gradle build daemon'. Working directory: >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1 Command: >>> /usr/lib/jvm/java-8-openjdk-amd64/bin/java -XX:MaxPermSize=256m >>> -XX:+HeapDumpOnOutOfMemoryError -Xmx1024m -Dfile.encoding=UTF-8 >>> -Duser.country=US -Duser.language=en -Duser.variant -cp >>> /usr/share/gradle/lib/gradle-launcher-3.2.1.jar >>> org.gradle.launcher.daemon.bootstrap.GradleDaemon 3.2.1 >>> Successfully started process 'Gradle build daemon' >>> An attempt to start the daemon took 0.62 secs. >>> Connected to daemon DaemonInfo{pid=103081, >>> address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, >>> addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, >>> lastBusy=1509376996459, >>> context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]}. >>> Dispatching request >>> BuildAndStop{id=642d5534-8837-4bd9-b101-9d40666366dc.1, >>> currentDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg}. >>> Received result org.gradle.launcher.daemon.protocol.BuildStarted@4a3631f8 >>> from daemon DaemonInfo{pid=103081, >>> address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, >>> addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, >>> lastBusy=1509376996459, >>> context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]} >>> (build should be starting). >>> The client will now receive all logging from the daemon (pid: 103081). The >>> daemon log file: >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1/daemon-103081.out.log >>> Closing daemon's stdin at end of input. >>> The daemon will no longer process any standard input. >>> Daemon will be stopped at the end of the build stopping after processing >>> Executing build with daemon context: >>> DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant] >>> Starting Build >>> Loading the Maven rules... >>> Settings evaluated using settings file >>> '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/settings.gradle'. >>> Projects loaded. Root project using build file >>> '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle'. >>> Included projects: [root project 'picard'] >>> Keep-alive timer started >>> Adding Debian repository to project 'picard' >>> Parallel execution is an incubating feature. >>> Evaluating root project 'picard' using build file >>> '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle'. >>> Starting process 'command 'dpkg-parsechangelog''. Working directory: >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg Command: dpkg-parsechangelog -S >>> Version >>> Successfully started process 'command 'dpkg-parsechangelog'' >>> build for version:2.8.1 >>> The Task.leftShift(Closure) method has been deprecated and is scheduled to >>> be removed in Gradle 5.0. Please use Task.doLast(Action) instead. >>> at org.gradle.api.internal.AbstractTask.leftShift(AbstractTask.java:505) >>> at org.gradle.api.Task$leftShift.call(Unknown Source) >>> at >>> org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:48) >>> at >>> org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:113) >>> at >>> org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125) >>> at >>> build_52qy3g2n0gbryc0a9kslk2sby.run(/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle:214) >>> at >>> org.gradle.groovy.scripts.internal.DefaultScriptRunnerFactory$ScriptRunnerImpl.run(DefaultScriptRunnerFactory.java:90) >>> at >>> org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl$2.run(DefaultScriptPluginFactory.java:176) >>> at >>> org.gradle.configuration.ProjectScriptTarget.addConfiguration(ProjectScriptTarget.java:77) >>> at >>> org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl.apply(DefaultScriptPluginFactory.java:181) >>> at >>> org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:38) >>> at >>> org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:25) >>> at >>> org.gradle.configuration.project.ConfigureActionsProjectEvaluator.evaluate(ConfigureActionsProjectEvaluator.java:34) >>> at >>> org.gradle.configuration.project.LifecycleProjectEvaluator.evaluate(LifecycleProjectEvaluator.java:55) >>> at >>> org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:573) >>> at >>> org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:125) >>> at >>> org.gradle.execution.TaskPathProjectEvaluator.configureHierarchy(TaskPathProjectEvaluator.java:42) >>> at >>> org.gradle.configuration.DefaultBuildConfigurer.configure(DefaultBuildConfigurer.java:38) >>> at >>> org.gradle.initialization.DefaultGradleLauncher$2.run(DefaultGradleLauncher.java:162) >>> at org.gradle.internal.Factories$1.create(Factories.java:25) >>> at >>> org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:91) >>> at >>> org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:53) >>> at >>> org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:159) >>> at >>> org.gradle.initialization.DefaultGradleLauncher.access$200(DefaultGradleLauncher.java:36) >>> at >>> org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:118) >>> at >>> org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:112) >>> at >>> org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:91) >>> at >>> org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:63) >>> at >>> org.gradle.initialization.DefaultGradleLauncher.doBuild(DefaultGradleLauncher.java:112) >>> at >>> org.gradle.initialization.DefaultGradleLauncher.run(DefaultGradleLauncher.java:98) >>> at >>> org.gradle.launcher.exec.GradleBuildController.run(GradleBuildController.java:66) >>> at >>> org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28) >>> at >>> org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35) >>> at >>> org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:41) >>> at >>> org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:26) >>> at >>> org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:75) >>> at >>> org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:49) >>> at >>> org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:44) >>> at >>> org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:29) >>> at >>> org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:67) >>> at >>> org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:47) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:26) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:34) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:74) >>> at >>> org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:72) >>> at org.gradle.util.Swapper.swap(Swapper.java:38) >>> at >>> org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:72) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:50) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:60) >>> at >>> org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:72) >>> at >>> org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36) >>> at >>> org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120) >>> at >>> org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:50) >>> at >>> org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:293) >>> at >>> org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:54) >>> at >>> org.gradle.internal.concurrent.StoppableExecutorImpl$1.run(StoppableExecutorImpl.java:40) >>> at >>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) >>> at >>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) >>> at java.lang.Thread.run(Thread.java:748) >>> Adding task debianMavenPom to project 'picard' >>> Configuring javadoc links >>> All projects evaluated. >>> Selected primary task 'test' from project : >>> Tasks to be executed: [task ':compileJava', task ':processResources', task >>> ':classes', task ':compileTestJava', task ':processTestResources', task >>> ':testClasses', task ':test'] >>> Using 16 parallel executor threads >>> :compileJava (Thread[Task worker,5,main]) started. >>> :compileJava >>> Putting task artifact state for task ':compileJava' into context took 0.042 >>> secs. >>> Task :compileJava class loader hash: 83f3637f6805a7b149525a93c5faad58 >>> Task :compileJava actions class loader hash: >>> d883a18cf154fc57e90f4d3fa9e5588f >>> Replacing com.google.guava:guava:jar:15.0 -> >>> com.google.guava:guava:jar:debian >>> Passing through com.google.guava:guava-parent:jar:debian >>> Replacing com.github.samtools:htsjdk:jar:2.8.0 -> >>> com.github.samtools:htsjdk:jar:debian >>> Passing through commons-logging:commons-logging:jar:debian >>> Passing through org.apache.commons:commons-parent:jar:debian >>> Passing through org.apache:apache:jar:debian >>> Passing through org.apache.commons:commons-compress:jar:debian >>> Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian >>> Passing through org.tukaani:xz:jar:debian >>> Passing through org.apache.commons:commons-jexl:jar:debian >>> Passing through org.xerial.snappy:snappy-java:jar:debian >>> Skipping task ':compileJava' as it is up-to-date (took 0.397 secs). >>> :compileJava UP-TO-DATE >>> :compileJava (Thread[Task worker,5,main]) completed. Took 0.458 secs. >>> :processResources (Thread[Task worker Thread 2,5,main]) started. >>> :processResources >>> Putting task artifact state for task ':processResources' into context took >>> 0.001 secs. >>> Task :processResources class loader hash: 83f3637f6805a7b149525a93c5faad58 >>> Task :processResources actions class loader hash: >>> fde60ab3b9776111ebd9bf87f24df716 >>> Skipping task ':processResources' as it is up-to-date (took 0.004 secs). >>> :processResources UP-TO-DATE >>> :processResources (Thread[Task worker Thread 2,5,main]) completed. Took >>> 0.007 secs. >>> :classes (Thread[Task worker Thread 3,5,main]) started. >>> :classes >>> Skipping task ':classes' as it has no actions. >>> :classes UP-TO-DATE >>> :classes (Thread[Task worker Thread 3,5,main]) completed. Took 0.001 secs. >>> :compileTestJava (Thread[Task worker Thread 3,5,main]) started. >>> :compileTestJava >>> Putting task artifact state for task ':compileTestJava' into context took >>> 0.0 secs. >>> Task :compileTestJava class loader hash: 83f3637f6805a7b149525a93c5faad58 >>> Task :compileTestJava actions class loader hash: >>> d883a18cf154fc57e90f4d3fa9e5588f >>> Replacing org.testng:testng:jar:6.9.10 -> org.testng:testng:jar:6.x >>> POM relocation to an other version number is not fully supported in Gradle >>> : org.testng:testng:6.x relocated to org.testng:testng:debian. >>> Please update your dependency to directly use the correct version >>> 'org.testng:testng:debian'. >>> Resolution will only pick dependencies of the relocated element. Artifacts >>> and other metadata will be ignored. >>> Passing through org.testng:testng:jar:debian >>> Passing through org.beanshell:bsh:jar:debian >>> Passing through com.beust:jcommander:jar:1.x >>> Executing task ':compileTestJava' (up-to-date check took 0.076 secs) due to: >>> No history is available. >>> All input files are considered out-of-date for incremental task >>> ':compileTestJava'. >>> Compiling with JDK Java compiler API. >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:29: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.AfterTest; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:31: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.BeforeTest; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:32: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FixMateInformationTest.java:27: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FixMateInformationTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CompareSAMsTest.java:26: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CompareSAMsTest.java:27: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:27: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.BeforeTest; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SplitSamByLibraryTest.java:29: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SplitSamByLibraryTest.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/GatherBamFilesTest.java:4: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/GatherBamFilesTest.java:5: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:4: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:5: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:6: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:34: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:35: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:36: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:27: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:29: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:31: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/ValidateSamTester.java:3: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/SamFileTester.java:12: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/CleanSamTester.java:13: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:26: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:27: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/ViewSamTest.java:34: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/ViewSamTest.java:35: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:3: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:4: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:5: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTester.java:38: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigarTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java:31: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java:32: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinderTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinderTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:34: >>> error: package org.testng does not exist >>> import static org.testng.Assert.assertTrue; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:34: >>> error: static import only from classes and interfaces >>> import static org.testng.Assert.assertTrue; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:38: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:39: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.BeforeClass; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:40: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:41: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java:27: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTester.java:30: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java:4: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java:5: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AsIsMarkDuplicatesTester.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AsIsMarkDuplicatesTester.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:28: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:30: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:27: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:34: >>> error: package org.testng does not exist >>> import static org.testng.Assert.assertEquals; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:34: >>> error: static import only from classes and interfaces >>> import static org.testng.Assert.assertEquals; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:35: >>> error: package org.testng does not exist >>> import static org.testng.Assert.assertTrue; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:35: >>> error: static import only from classes and interfaces >>> import static org.testng.Assert.assertTrue; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AddCommentsToBamTest.java:7: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AddCommentsToBamTest.java:8: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:32: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:33: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.BeforeClass; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:34: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:35: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AbstractAlignmentMergerTest.java:5: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AbstractAlignmentMergerTest.java:6: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:34: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:35: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:36: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:14: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:15: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.AfterTest; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:16: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.BeforeTest; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:17: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:18: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:30: >>> error: package org.testng does not exist >>> import static org.testng.Assert.assertEquals; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:30: >>> error: static import only from classes and interfaces >>> import static org.testng.Assert.assertEquals; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:32: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:33: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:34: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeSamFilesTest.java:31: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeSamFilesTest.java:32: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/PicardCommandLineTest.java:3: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:27: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:28: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:29: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:9: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:10: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.DataProvider; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:11: >>> error: package org.testng.annotations does not exist >>> import org.testng.annotations.Test; >>> ^ >>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/IntervalListToBedTest.java:4: >>> error: package org.testng does not exist >>> import org.testng.Assert; >>> ^ >>> Note: Some input files use or override a deprecated API. >>> Note: Recompile with -Xlint:deprecation for details. >>> Note: Some input files use unchecked or unsafe operations. >>> Note: Recompile with -Xlint:unchecked for details. >>> 100 errors >>> :compileTestJava FAILED >>> :compileTestJava (Thread[Task worker Thread 3,5,main]) completed. Took >>> 1.959 secs. >>> >>> FAILURE: Build failed with an exception. >>> >>> * What went wrong: >>> Execution failed for task ':compileTestJava'. >>>> Compilation failed; see the compiler error output for details. >>> * Try: >>> Run with --debug option to get more log output. >>> >>> * Exception is: >>> org.gradle.api.tasks.TaskExecutionException: Execution failed for task >>> ':compileTestJava'. >>> at >>> org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:84) >>> at >>> org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:55) >>> at >>> org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:61) >>> at >>> org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:58) >>> at >>> org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:88) >>> at >>> org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:45) >>> at >>> org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:51) >>> at >>> org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) >>> at >>> org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) >>> at >>> org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) >>> at >>> org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:233) >>> at >>> org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:215) >>> at >>> org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.processTask(AbstractTaskPlanExecutor.java:74) >>> at >>> org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.run(AbstractTaskPlanExecutor.java:55) >>> at >>> org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:54) >>> at >>> org.gradle.internal.concurrent.StoppableExecutorImpl$1.run(StoppableExecutorImpl.java:40) >>> Caused by: >>> org.gradle.api.internal.tasks.compile.CompilationFailedException: >>> Compilation failed; see the compiler error output for details. >>> at >>> org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:48) >>> at >>> org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:33) >>> at >>> org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.delegateAndHandleErrors(NormalizingJavaCompiler.java:104) >>> at >>> org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:53) >>> at >>> org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:38) >>> at >>> org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:35) >>> at >>> org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:25) >>> at >>> org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCompile.java:188) >>> at >>> org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:169) >>> at >>> org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:112) >>> at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73) >>> at >>> org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$IncrementalTaskAction.doExecute(DefaultTaskClassInfoStore.java:163) >>> at >>> org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$StandardTaskAction.execute(DefaultTaskClassInfoStore.java:134) >>> at >>> org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$StandardTaskAction.execute(DefaultTaskClassInfoStore.java:123) >>> at >>> org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:95) >>> at >>> org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:76) >>> ... 15 more >>> >>> >>> BUILD FAILED >>> >>> Total time: 5.997 secs >>> Stopped 0 compiler daemon(s). >>> Received result Failure[value=org.gradle.initialization.ReportedException: >>> org.gradle.internal.exceptions.LocationAwareException: Execution failed for >>> task ':compileTestJava'.] from daemon DaemonInfo{pid=103081, >>> address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, >>> addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, >>> lastBusy=1509376996459, >>> context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]} >>> (build should be done). >>> dh_auto_build: gradle --info --console plain --offline --stacktrace >>> --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. >>> -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 >>> --parallel --max-workers=16 test returned exit code 1 >>> debian/rules:16: recipe for target 'override_dh_auto_test' failed >>> make[1]: *** [override_dh_auto_test] Error 25 >> The full build log is available from: >> >> http://aws-logs.debian.net/2017/10/30/picard-tools_2.8.1+dfsg-2_unstable.log >> >> A list of current common problems and possible solutions is available at >> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! >> >> About the archive rebuild: The rebuild was done on EC2 VM instances from >> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every >> failed build was retried once to eliminate random failures. >> >> _______________________________________________ >> Debian-med-packaging mailing list >> debian-med-packag...@lists.alioth.debian.org >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
-- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438