Bug#945985: [Debichem-devel] problem with python3-rdkit in Debian Sid
On 12/3/19 5:25 PM, mer...@debian.org wrote: > Hi Francois, > > On 2019-12-03 02:43, Francois Berenger wrote: >> Where can I follow this bug? > > I have filed a bug report [1] for this issue. By the way, could you try > installing 'libschroedinger-maeparser1' package and rerunning the > failing code? > > [1] https://bugs.debian.org/945985 > >> Also, how can I get and test the package in the NEW queue? > > You can clone the packaging repository [2], switch to > 'debian/201909.1-1' tag and build the binary packages with 'gbp > buildpackage -uc -us --git-ignore-branch', for example. > > [2] https://tracker.debian.org/pkg/rdkit Hello, Thanks for your feedback. The correct git URL that can be cloned looks like this one: [2] https://salsa.debian.org/debichem-team/rdkit.git I had to install the git-buildpackage program in order to run gbp. I am unable to run your proposed command: --- gbp buildpackage -uc -us --git-ignore-branch gbp:error: Currently not on a branch --- I did checkout 'debian/201909.1-1'. But this is a tag... Can you give me the exact sequence of commands that need to be run after a fresh checkout in order to run gbp? Thanks, F.
Bug#945985: [Debichem-devel] problem with python3-rdkit in Debian Sid
control: retitle -1 rdkit: rebuild with libschroedinger-maeparser1/1.2.2-1 control: severity -1 important control: owner -1 ! Hi, I confirm that the issue occurs on my machine too. It must be due to the changed library name of libschroedinger-maeparser1. A rebuild of the package should solve the issue. I will ask for binNMU. Best, Andrius On 2019-12-04 03:18, Francois Berenger wrote: > This package is already installed on the system...
Bug#945985: [Debichem-devel] problem with python3-rdkit in Debian Sid
On 12/3/19 5:25 PM, mer...@debian.org wrote: > Hi Francois, > > On 2019-12-03 02:43, Francois Berenger wrote: >> Where can I follow this bug? > > I have filed a bug report [1] for this issue. By the way, could you try > installing 'libschroedinger-maeparser1' package and rerunning the > failing code? This package is already installed on the system... > [1] https://bugs.debian.org/945985 > >> Also, how can I get and test the package in the NEW queue? > > You can clone the packaging repository [2], switch to > 'debian/201909.1-1' tag and build the binary packages with 'gbp > buildpackage -uc -us --git-ignore-branch', for example. > > [2] https://tracker.debian.org/pkg/rdkit > > Best wishes, > Andrius >
Bug#945985: [Debichem-devel] problem with python3-rdkit in Debian Sid
Hi Francois, On 2019-12-03 02:43, Francois Berenger wrote: > Where can I follow this bug? I have filed a bug report [1] for this issue. By the way, could you try installing 'libschroedinger-maeparser1' package and rerunning the failing code? [1] https://bugs.debian.org/945985 > Also, how can I get and test the package in the NEW queue? You can clone the packaging repository [2], switch to 'debian/201909.1-1' tag and build the binary packages with 'gbp buildpackage -uc -us --git-ignore-branch', for example. [2] https://tracker.debian.org/pkg/rdkit Best wishes, Andrius
Bug#945985: [Debichem-devel] problem with python3-rdkit in Debian Sid
Source: rdkit Version: 201903.1-2 Hi Francois, The python3-rdkit seems missing a dependency on libschroedinger-maeparser1. The new version of rdkit is waiting in the NEW queue, thus I open a bug report to track this problem. On 2019-11-29 05:42, Francois Berenger wrote: > This small pyhon3 code fragment does not work: > > --- > import rdkit > from rdkit import Chem > --- > > Log file, test script and all installed packages on the system are attached. test_rdkit.log: Traceback (most recent call last): File "./test_rdkit.py", line 4, in from rdkit import Chem File "/usr/lib/python3/dist-packages/rdkit/Chem/__init__.py", line 23, in from rdkit.Chem.rdmolfiles import * ImportError: libmaeparser.so.1.2: cannot open shared object file: No such file or directory Thanks for the report, Andrius
