Bug#978483: r-cran-pbkrtest: not installable in sid

2020-12-27 Thread Dirk Eddelbuettel


On 28 December 2020 at 00:25, Aurelien Jarno wrote:
| Package: r-cran-pbkrtest
| Version: 0.5-0.1-1
| Severity: serious
| 
| r-cran-pbkrtest is currently not installable in sid:
| 
| # apt-get install r-cran-pbkrtest
| Reading package lists... Done
| Building dependency tree
| Reading state information... Done
| Some packages could not be installed. This may mean that you have
| requested an impossible situation or if you are using the unstable
| distribution that some required packages have not yet been created
| or been moved out of Incoming.
| The following information may help to resolve the situation:
| 
| The following packages have unmet dependencies:
|  r-cran-pbkrtest : Depends: r-cran-lme4 (>= 1.1.10) but it is not going to be 
installed
| E: Unable to correct problems, you have held broken packages.
| 
| There is likely a typo in the version, it should be 1.1-10 instead of
| 1.1.10.

That is auto generated (which a hand-added line break):

   Depends: ${misc:Depends}, ${R:Depends}, r-cran-lme4, r-cran-nloptr, 
r-cran-matrix, \
   r-cran-mass, r-cran-magrittr, r-cran-broom, r-cran-dplyr, r-cran-numderiv, 
r-cran-knitr

Could this be a bug in dh-r?  Also unclear where '1.1.10' comes from as:

   $ apt-cache policy r-cran-lme4
   r-cran-lme4:
 Installed: (none)
 Candidate: 1.1-26-1
 Version table:
1.1-26-1 990
   990 http://deb.debian.org/debian testing/main amd64 Packages
   500 http://http.debian.net/debian sid/main amd64 Packages
   $ 

But I think it is a regression. I had a patch against the *broken upstream*
DESCRIPTION file:

   Depends: R (>= 3.5.0), lme4 (>= 1.1.10)
   Imports: broom, dplyr, magrittr, MASS, Matrix (>= 1.2.3), methods,
   numDeriv, parallel, knitr

I re-enable the patch in pbkrtest and will try to talk to upstream to fix it.

Thanks for catching this.

Dirk


-- 
https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org



Bug#978483: r-cran-pbkrtest: not installable in sid

2020-12-27 Thread Aurelien Jarno
Package: r-cran-pbkrtest
Version: 0.5-0.1-1
Severity: serious

r-cran-pbkrtest is currently not installable in sid:

# apt-get install r-cran-pbkrtest
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
 r-cran-pbkrtest : Depends: r-cran-lme4 (>= 1.1.10) but it is not going to be 
installed
E: Unable to correct problems, you have held broken packages.

There is likely a typo in the version, it should be 1.1-10 instead of
1.1.10.

Regards,
Aurelien

-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.9.0-5-amd64 (SMP w/4 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled