Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-10-06 Thread Nilesh Patra
This is blocked by

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992676

Pinged the upstream, pinging here on the bug to delay the removal for a
bit

Nilesh


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Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-09-05 Thread Nilesh Patra
On Sat, 07 Aug 2021 15:38:00 +0200 Steffen Moeller  wrote:
> Package: python3-skbio
> Version: 0.5.6-4
> Severity: normal
> 
> Dear Maintainer,
> 
> Unpacking python3-skbio (0.5.6-4) ...
> dpkg: error processing archive 
> /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb (--unpack):
>  trying to overwrite '/usr/lib/python3/dist-packages/benchmarks/__init__.py', 
> which is also in package cutesv 1.0.11-1
> dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
> Errors were encountered while processing:
>  /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb
> 
> I just fixed cutesv, leaving this as a reminder to also fix skbio.
  ^^

Hi Steffen,

this RC bug is triggering removal of several q2-* plugins from testing.
Can you fix this now?

Nilesh


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Bug#993463: Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-09-05 Thread Nilesh Patra
Hi Ole,

Can I ask you to fix this with sunpy soonish? This is one of the reasons
for keeping sunpy out of testing too

Nilesh

On Wed, 1 Sep 2021 20:20:47 +0300 Adrian Bunk  wrote:
> Control: severity -1 serious
> Control: clone -1 -2
> Control: reassign -2 python3-sunpy 3.0.1-3
> Control: retitle -2 python3-sunpy: package installs 
> .../dist-packages/benchmarks/..
> 
> On Sat, Aug 07, 2021 at 03:38:00PM +0200, Steffen Moeller wrote:
> > Package: python3-skbio
> > Version: 0.5.6-4
> > Severity: normal
> > 
> > Dear Maintainer,
> > 
> > Unpacking python3-skbio (0.5.6-4) ...
> > dpkg: error processing archive 
> > /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb (--unpack):
> >  trying to overwrite 
> > '/usr/lib/python3/dist-packages/benchmarks/__init__.py', which is also in 
> > package cutesv 1.0.11-1
> > dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
> > Errors were encountered while processing:
> >  /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb
> > 
> > I just fixed cutesv, leaving this as a reminder to also fix skbio.
> 
> And now python3-sunpy does the same:
> 
> ...
> Unpacking python3-sunpy (3.0.1-3) over (2.0.7-1) ...
> dpkg: error processing archive 
> /tmp/apt-dpkg-install-wnyRIj/135-python3-sunpy_3.0.1-3_amd64.deb (--unpack):
>  trying to overwrite '/usr/lib/python3/dist-packages/benchmarks/__init__.py', 
> which is also in package python3-skbio 0.5.6-4
> ...
> 
> > Cheers,
> > Steffen
> 
> cu
> Adrian
> 
> 


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Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-09-01 Thread Adrian Bunk
Control: severity -1 serious
Control: clone -1 -2
Control: reassign -2 python3-sunpy 3.0.1-3
Control: retitle -2 python3-sunpy: package installs 
.../dist-packages/benchmarks/..

On Sat, Aug 07, 2021 at 03:38:00PM +0200, Steffen Moeller wrote:
> Package: python3-skbio
> Version: 0.5.6-4
> Severity: normal
> 
> Dear Maintainer,
> 
> Unpacking python3-skbio (0.5.6-4) ...
> dpkg: error processing archive 
> /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb (--unpack):
>  trying to overwrite '/usr/lib/python3/dist-packages/benchmarks/__init__.py', 
> which is also in package cutesv 1.0.11-1
> dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
> Errors were encountered while processing:
>  /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb
> 
> I just fixed cutesv, leaving this as a reminder to also fix skbio.

And now python3-sunpy does the same:

...
Unpacking python3-sunpy (3.0.1-3) over (2.0.7-1) ...
dpkg: error processing archive 
/tmp/apt-dpkg-install-wnyRIj/135-python3-sunpy_3.0.1-3_amd64.deb (--unpack):
 trying to overwrite '/usr/lib/python3/dist-packages/benchmarks/__init__.py', 
which is also in package python3-skbio 0.5.6-4
...

> Cheers,
> Steffen

cu
Adrian



Bug#991981: python3-skbio: package installs .../dist-packages/benchmarks/..

2021-08-07 Thread Steffen Moeller
Package: python3-skbio
Version: 0.5.6-4
Severity: normal

Dear Maintainer,

Unpacking python3-skbio (0.5.6-4) ...
dpkg: error processing archive 
/var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb (--unpack):
 trying to overwrite '/usr/lib/python3/dist-packages/benchmarks/__init__.py', 
which is also in package cutesv 1.0.11-1
dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
Errors were encountered while processing:
 /var/cache/apt/archives/python3-skbio_0.5.6-4_amd64.deb

I just fixed cutesv, leaving this as a reminder to also fix skbio.

Cheers,
Steffen