Hi Paul, Paul Gevers, on 2021-08-10: > I copied some of the output at the bottom of this report. It's ironical > that cd-hit complains about not enough memory when the worker this test > runs on has the biggest amount of memory we have in the ci.d.n worker > park: 250GB. If I read the output correctly, you assign the amount of > memory cd-hit is allowed to use and the required amount of memory also > depends on the amount of cores. This machine has 160 cores. I wonder if > the value for -M needs to be calculated instead of hard coded or that > you should limit the maximum amount of cores used or... But I leave it > up to you to find the appropriate solution.
Looking up the cd-hit(1) manual, it seems possible to disable the memory limit by specifying -M 0. At least it seems to do the expected thing on my end. I will adjust the autopkgtest accordingly, and maybe upload at some point after the bullseye release. Thank you for your analysis! Have a nice day, :) -- Étienne Mollier <emoll...@emlwks999.eu> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/2, please excuse my verbosity.
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