Bug#724116: resource-agents: diff for NMU version 1:3.9.3+git20121009-3.1

2014-02-21 Thread Salvatore Bonaccorso
tags 724116 + pending patch
tags 739608 + pending patch
thanks

Dear maintainer,

I've prepared an NMU for resource-agents (versioned as
1:3.9.3+git20121009-3.1) and uploaded it to DELAYED/5. Please feel
free to tell me if I should delay it longer.

Regards,
Salvatore
diff -Nru resource-agents-3.9.3+git20121009/debian/changelog resource-agents-3.9.3+git20121009/debian/changelog
--- resource-agents-3.9.3+git20121009/debian/changelog	2012-11-22 11:19:32.0 +0100
+++ resource-agents-3.9.3+git20121009/debian/changelog	2014-02-21 09:02:44.0 +0100
@@ -1,3 +1,19 @@
+resource-agents (1:3.9.3+git20121009-3.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Add 724116-fix-FTBFS.patch patch.
+Fixes resource-agents: FTBFS: /bin/bash: /install-sh: No such file or
+directory.
+Thanks to William Grant wgr...@ubuntu.com (Closes: #724116)
+  * Add 0001-Disable-HTTPS-SSL-certificate-hostname-checking-tidy.patch patch.
+Fixes ldirectord: fails to test HTTPS real servers. HTTPS checks with
+request/receive will fail under newer versions of the LWP module due to
+certificate name checking being enabled by default. This +disables the
+check again so that service checking by IP only still succeeds.
+(Closes: #739608)
+
+ -- Salvatore Bonaccorso car...@debian.org  Thu, 20 Feb 2014 13:40:22 +0100
+
 resource-agents (1:3.9.3+git20121009-3) unstable; urgency=low
 
   * Fix the previous upload by including the proper patch this time. 
diff -Nru resource-agents-3.9.3+git20121009/debian/patches/0001-Disable-HTTPS-SSL-certificate-hostname-checking-tidy.patch resource-agents-3.9.3+git20121009/debian/patches/0001-Disable-HTTPS-SSL-certificate-hostname-checking-tidy.patch
--- resource-agents-3.9.3+git20121009/debian/patches/0001-Disable-HTTPS-SSL-certificate-hostname-checking-tidy.patch	1970-01-01 01:00:00.0 +0100
+++ resource-agents-3.9.3+git20121009/debian/patches/0001-Disable-HTTPS-SSL-certificate-hostname-checking-tidy.patch	2014-02-21 09:02:44.0 +0100
@@ -0,0 +1,56 @@
+From 68fad38326b7c04efd6434e736e32fe395eafe02 Mon Sep 17 00:00:00 2001
+From: Matthew Newton m...@leicester.ac.uk
+Date: Fri, 11 Oct 2013 10:43:40 +0100
+Subject: [PATCH] Disable HTTPS SSL certificate hostname checking, tidy debug
+ output
+
+HTTPS checks with request/receive will fail under newer versions of the
+LWP module due to certificate name checking being enabled by default. This
+disables the check again so that service checking by IP only still succeeds.
+
+Additional debug output shows the Status line so that it is easier to find out
+why the service is down. Debug output tidied up when SSL values are not set
+(usually if there has been an error, or the host is unreachable).
+---
+ ldirectord/ldirectord.in | 16 +---
+ 1 file changed, 9 insertions(+), 7 deletions(-)
+
+diff --git a/ldirectord/ldirectord.in b/ldirectord/ldirectord.in
+index 45a4204..6a46d97 100644
+--- a/ldirectord/ldirectord.in
 b/ldirectord/ldirectord.in
+@@ -2835,7 +2835,7 @@ sub check_http
+ 	ld_debug(2, check_http: url=\$$r{url}\ 
+ 		. virtualhost=\$virtualhost\);
+ 
+-	my $ua = new LWP::UserAgent();
++	my $ua = new LWP::UserAgent(ssl_opts = { verify_hostname = 0 });
+ 
+ 	my $h = undef;
+ 	if ($$v{service} eq http_proxy) {
+@@ -2876,14 +2876,16 @@ sub check_http
+ 	}
+ 
+ 	if ($$v{service} eq https) {
+-		ld_debug(2, SSL-Cipher:  .
+-			$res-header('Client-SSL-Cipher'));
+-		ld_debug(2, SSL-Cert-Subject:  .
+-			$res-header('Client-SSL-Cert-Subject'));
+-		ld_debug(2, SSL-Cert-Issuer:  .
+-			$res-header('Client-SSL-Cert-Issuer'));
++ld_debug(2, SSL-Cipher:  .
++($res-header('Client-SSL-Cipher') || 'not set'));
++ld_debug(2, SSL-Cert-Subject:  .
++($res-header('Client-SSL-Cert-Subject') || 'not set'));
++ld_debug(2, SSL-Cert-Issuer:  .
++($res-header('Client-SSL-Cert-Issuer') || 'not set'));
+ 	}
+ 
++	ld_debug(2, Return status:  . $res-status_line);
++
+ 	my $recstr = $$r{receive};
+ 	if ($res-is_success  (!($recstr =~ /.+/) ||
+ $res-content =~ /$recstr/)) {
+-- 
+1.9.0
+
diff -Nru resource-agents-3.9.3+git20121009/debian/patches/724116-fix-FTBFS.patch resource-agents-3.9.3+git20121009/debian/patches/724116-fix-FTBFS.patch
--- resource-agents-3.9.3+git20121009/debian/patches/724116-fix-FTBFS.patch	1970-01-01 01:00:00.0 +0100
+++ resource-agents-3.9.3+git20121009/debian/patches/724116-fix-FTBFS.patch	2014-02-21 09:02:44.0 +0100
@@ -0,0 +1,45 @@
+Description: Fix configure.ac to cope with new autoconf.
+ Recent autoconfs generate a bad configure when AM_INIT_AUTOMAKE is
+ called as late as it was, ending up thinking that the am_aux_dir is pwd
+ at the start of the build. Move it up to under AC_INIT to fix that.
+Author: William Grant wgr...@ubuntu.com
+
+Index: resource-agents-3.9.3+git20121009/configure.ac

Processed: resource-agents: diff for NMU version 1:3.9.3+git20121009-3.1

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tags 724116 + pending patch
Bug #724116 [src:resource-agents] resource-agents: FTBFS: /bin/bash: 
/install-sh: No such file or directory
Added tag(s) pending.
 tags 739608 + pending patch
Bug #739608 [ldirectord] ldirectord: fails to test HTTPS real servers
Added tag(s) pending.
 thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
724116: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=724116
739608: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739608
Debian Bug Tracking System
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Bug#739614: Fwd: Re: Bug#739614: [apache2] unable to execute apache2

2014-02-21 Thread Arno Töll



 Original Message 
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Subject: Re: Bug#739614: [apache2] unable to execute apache2
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 apachectl start

Command 593 of 97 #apachectl start
sh: 0: getcwd() failed: No such file or directory
AH00558: apache2: Could not reliably determine the server's fully
qualified domain name, using 2a00:1620:c0:50:f66d:4ff:fe74:f12c. Set
the 'ServerName' directive globally to suppress this message
(98)Address already in use: AH00072: make_sock: could not bind to
address [::]:80
(98)Address already in use: AH00072: make_sock: could not bind to
address 0.0.0.0:80
no listening sockets available, shutting down
AH00015: Unable to open logs
Action 'start' failed.
The Apache error log may have more information.


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Bug#735516: marked as done (python-liblas: hardcoded dependency on liblas1 which is no longer built by liblas)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 09:19:44 +
with message-id e1wgmgm-0004fj...@franck.debian.org
and subject line Bug#735516: fixed in liblas 1.7.0+dfsg-3
has caused the Debian Bug report #735516,
regarding python-liblas: hardcoded dependency on liblas1 which is no longer 
built by liblas
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
735516: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=735516
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: python-liblas
Version: 1.2.1-2
Severity: serious
Tags: sid jessie

liblas bumped its SONAME and started a transition from liblas1 to
liblas2 and liblas-c2. The liblas1 package is no longer built by liblas.
python-liblas has a hardcoded dependency on liblas1 and needs to be
updated. Since python-liblas uses ctypes, it might be necessary to adopt
the code to be compatible with the new ABI.

Regards
-- 
Sebastian Ramacher


signature.asc
Description: Digital signature
---End Message---
---BeginMessage---
Source: liblas
Source-Version: 1.7.0+dfsg-3

We believe that the bug you reported is fixed in the latest version of
liblas, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 735...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Bas Couwenberg sebas...@xs4all.nl (supplier of updated liblas package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 08 Feb 2014 03:15:29 +0100
Source: liblas
Binary: liblas2 liblas-c2 liblas-dev liblas-c-dev liblas-bin python-liblas
Architecture: source amd64 all
Version: 1.7.0+dfsg-3
Distribution: unstable
Urgency: low
Maintainer: Debian GIS Project pkg-grass-de...@lists.alioth.debian.org
Changed-By: Bas Couwenberg sebas...@xs4all.nl
Description: 
 liblas-bin - ASPRS LiDAR data translation toolset
 liblas-c-dev - ASPRS LiDAR data translation library - C development files
 liblas-c2  - ASPRS LiDAR data translation library - C version
 liblas-dev - ASPRS LiDAR data translation library - C++ development files
 liblas2- ASPRS LiDAR data translation library - C++ version
 python-liblas - Python module to use the ASPRS LiDAR data translation library
Closes: 645820 735516 736129
Changes: 
 liblas (1.7.0+dfsg-3) unstable; urgency=low
 .
   * Team upload.
   * Update debian watch file with sepwatch changes,
 and handle more common mistakes.
   * Refresh boost patch.
   * Also build python extension, replaces separate source package.
 (closes: #735516)
   * Remove obsolete liblas1.install.
   * Add patch to fix the library version and SONAME.
   * Add lintian overrides for no symbols file,
 symbols are problematic for C++ libraries.
   * Enable verbose build logs.
   * Add patch from python-liblas to fix the library search path.
   * Use pybuild instead of python_distutils buildsystem.
 Thanks Graham Inggs for the patch.
   * Change libtiff build dependency to libtiff-dev only.
 (closes: #736129)
   * Update liblas-dev dependency on libgdal-dev to match the build dependency.
   * Drop shlibs:Depends for -dev packages.
   * Add manpages for liblas-bin  liblas-dev.
 (closes: #645820)
   * Install python examples.
Checksums-Sha1: 
 bf98cd4093a201d10b3ba9109135057959c85975 2415 liblas_1.7.0+dfsg-3.dsc
 9ca0961b66262ef1a81636d74d73882d74190a57 16160 
liblas_1.7.0+dfsg-3.debian.tar.xz
 95018f27d4da67c77ec1c07af9d9d6264db2fe65 250390 liblas2_1.7.0+dfsg-3_amd64.deb
 162cc1d2e88a3643b6391f004738900465eb78fd 67804 liblas-c2_1.7.0+dfsg-3_amd64.deb
 36c8a1556c2931b39027701a4c32400c47dd5440 90952 
liblas-dev_1.7.0+dfsg-3_amd64.deb
 34e9d1315ba81151fe587b448235e3d545da73a7 12874 
liblas-c-dev_1.7.0+dfsg-3_amd64.deb
 b88440804f180d981ee6f07013844b6d891a9524 233442 
liblas-bin_1.7.0+dfsg-3_amd64.deb
 23ba6a5090b67eb172f0789829f1eb07f95cb62e 34158 
python-liblas_1.7.0+dfsg-3_all.deb
Checksums-Sha256: 
 15ccf37f71e7ffc73215404e376e6ddfffc8c9a86980c2434fd760ae4c18b8be 2415 
liblas_1.7.0+dfsg-3.dsc
 f456c125903851e9ece1fa677e3b4329f8d98d1dcc9d9377b757c2da9bcf4f5c 16160 
liblas_1.7.0+dfsg-3.debian.tar.xz
 91b1fe750d4a745905906bfe175bc33702acde0980d5f0349c43689afacf47e5 250390 
liblas2_1.7.0+dfsg-3_amd64.deb
 

Bug#739657: gnuhealth-server: fails to install: gnuhealth-server.postinst: sudo: not found

2014-02-21 Thread Andreas Tille
Hi Emilien,

looking at the gnuhealth-server.*inst files I guess you mean su instead
of sudo.  You are just root and want to execute the command as
dbc_dbuser, right?

Kind regards

   Andreas.

On Fri, Feb 21, 2014 at 02:13:54AM +0100, Andreas Beckmann wrote:
 Package: gnuhealth-server
 Version: 2.4.1-1
 Severity: serious
 User: debian...@lists.debian.org
 Usertags: piuparts
 
 Hi,
 
 during a test with piuparts I noticed your package failed to install. As
 per definition of the release team this makes the package too buggy for
 a release, thus the severity.
 
 From the attached log (scroll to the bottom...):
 
   Selecting previously unselected package gnuhealth-server.
   (Reading database ... 12363 files and directories currently installed.)
   Preparing to unpack .../gnuhealth-server_2.4.1-1_all.deb ...
   Unpacking gnuhealth-server (2.4.1-1) ...
   Setting up gnuhealth-server (2.4.1-1) ...
   dbconfig-common: writing config to 
 /etc/dbconfig-common/gnuhealth-server.conf
   
   Creating config file /etc/dbconfig-common/gnuhealth-server.conf with new 
 version
   creating postgres user gnuhealth:  success.
   verifying creation of user: success.
   creating database gnuhealth: success.
   verifying database gnuhealth exists: success.
   populating database via scriptfile...  error encountered populating 
 database:
   /usr/share/dbconfig-common/scripts/gnuhealth-server/install/pgsql exited 
 with non-zero status
   dbconfig-common: gnuhealth-server configure: noninteractive fail.
   dbconfig-common: gnuhealth-server configure: ignoring errors from here 
 forwards
   done.
   dbconfig-common: flushing administrative password
   Updating the 'gnuhealth' database
   /var/lib/dpkg/info/gnuhealth-server.postinst: 59: 
 /var/lib/dpkg/info/gnuhealth-server.postinst: sudo: not found
   dpkg: error processing package gnuhealth-server (--configure):
subprocess installed post-installation script returned error exit status 
 127
   Errors were encountered while processing:
gnuhealth-server
 
 
 cheers,
 
 Andreas


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Bug#739685: flashplugin-nonfree: updater fails to download fp.11.2.202.341.sha512.i386.pgp.asc

2014-02-21 Thread Michael Hatzold
Package: flashplugin-nonfree
Version: 1:3.4
Severity: critical
Tags: security
Justification: root security hole

Dear Maintainer,

seems checksum file is missing again.

*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?

# update-flashplugin-nonfree --status
Flash Player version installed on this system  : 11.2.202.336
Flash Player version available on upstream site: 11.2.202.341
flash-mozilla.so - auto mode
  link currently points to /usr/lib/flashplugin-nonfree/libflashplayer.so
/usr/lib/flashplugin-nonfree/libflashplayer.so - priority 50
Current 'best' version is '/usr/lib/flashplugin-nonfree/libflashplayer.so'.
root@lintower:~# update-flashplugin-nonfree -iv
options :  -i -v --
temporary directory: /tmp/flashplugin-nonfree.zzzwdR94s3
importing public key ...
selected action = --install
installed version = 11.2.202.336
upstream version = 11.2.202.341
wgetoptions= -nd -P .   -v --progress=dot:default
downloading http://people.debian.org/~bartm/flashplugin-
nonfree/fp.11.2.202.341.sha512.i386.pgp.asc ...
--2014-02-21 11:39:01--  http://people.debian.org/~bartm/flashplugin-
nonfree/fp.11.2.202.341.sha512.i386.pgp.asc
Auflösen des Hostnamen »people.debian.org (people.debian.org)«...
206.12.19.5, 2607:f8f0:610:4000:214:38ff:feee:b65a
Verbindungsaufbau zu people.debian.org (people.debian.org)|206.12.19.5|:80...
verbunden.
HTTP-Anforderung gesendet, warte auf Antwort... 404 Not Found
2014-02-21 11:39:01 FEHLER 404: Not Found.



   * What outcome did you expect instead?

Installation of new flashplungin-nonfree.




-- Package-specific info:
Debian version: jessie/sid
Architecture: i386
Package version: 1:3.4
Adobe Flash Player version: LNX 11,2,202,336
MD5 checksums:
208968bb1109e8627fa3c08b43814bee  
/var/cache/flashplugin-nonfree/get-upstream-version.pl
bd7f77dfd0a03bbbd5d124febb8c83d5  
/var/cache/flashplugin-nonfree/install_flash_player_11_linux.i386.tar.gz
bb65bbfca69eb7da3dcdbf4693ea352c  
/usr/lib/flashplugin-nonfree/libflashplayer.so
Alternatives:
flash-mozilla.so - auto mode
  link currently points to 
/usr/lib/flashplugin-nonfree/libflashplayer.so
/usr/lib/flashplugin-nonfree/libflashplayer.so - priority 50
Current 'best' version is 
'/usr/lib/flashplugin-nonfree/libflashplayer.so'.
lrwxrwxrwx 1 root root 34 Dec  9 15:46 
/usr/lib/mozilla/plugins/flash-mozilla.so - /etc/alternatives/flash-mozilla.so
/usr/lib/mozilla/plugins/flash-mozilla.so: symbolic link to 
`/etc/alternatives/flash-mozilla.so' 

-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (900, 'unstable'), (500, 'testing'), (500, 'stable'), (1, 
'experimental')
Architecture: i386 (i686)

Kernel: Linux 3.13-0.towo.3-siduction-686 (SMP w/1 CPU core; PREEMPT)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages flashplugin-nonfree depends on:
ii  binutils   2.24-3
ii  debconf [debconf-2.0]  1.5.52
ii  gnupg  1.4.16-1
ii  libatk1.0-02.10.0-2
ii  libcairo2  1.12.16-2
ii  libcurl3-gnutls7.35.0-1
ii  libfontconfig1 2.11.0-2
ii  libfreetype6   2.5.2-1
ii  libgcc11:4.8.2-15
ii  libglib2.0-0   2.37.5+really2.36.4-0r0
ii  libgtk2.0-02.24.22-1
ii  libnspr4   2:4.10.3-1
ii  libnss32:3.15.4-2+fix1
ii  libpango1.0-0  1.36.0-1+b1
ii  libstdc++6 4.8.2-15
ii  libx11-6   2:1.6.2-1
ii  libxext6   2:1.3.2-1
ii  libxt6 1:1.1.4-1
ii  wget   1.15-1

flashplugin-nonfree recommends no packages.

Versions of packages flashplugin-nonfree suggests:
ii  flashplugin-nonfree-extrasound  0.0.svn2431-3
ii  fonts-dejavu2.34-1
ii  hal 0.5.14-8
ii  iceweasel   24.3.0esr-1
pn  konqueror-nsplugins none
ii  ttf-mscorefonts-installer   3.5
ii  ttf-xfree86-nonfree 4.2.1-3.1

-- no debconf information


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Bug#739188: gnome-orca: python-speechd is gone

2014-02-21 Thread Emilio Pozuelo Monfort
On 18/02/14 21:06, Paul Gevers wrote:
 On 16-02-14 20:07, Emilio Pozuelo Monfort wrote:
 It is basically done in svn.
 
 Just to check with everybody. Are there any objections uploading the
 current svn version + enabling python3-speechd? If not, I will do a
 final check and upload if I don't find anything.

I have updated svn (locally) to 3.10 and tried it and it doesn't work at all
(the orca process runs but doesn't emit any sound). I haven't had the time to
debug this yet though.


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Bug#739188: gnome-orca: python-speechd is gone

2014-02-21 Thread Paul Gevers
On 21-02-14 12:07, Emilio Pozuelo Monfort wrote:
 On 18/02/14 21:06, Paul Gevers wrote:
 On 16-02-14 20:07, Emilio Pozuelo Monfort wrote:
 It is basically done in svn.

 Just to check with everybody. Are there any objections uploading the
 current svn version + enabling python3-speechd? If not, I will do a
 final check and upload if I don't find anything.
 
 I have updated svn (locally) to 3.10 and tried it and it doesn't work at all
 (the orca process runs but doesn't emit any sound). I haven't had the time to
 debug this yet though.
 

I am working on the latest 3.8. If it runs, I will upload that for now
and we can have some time to get 3.10 working. I expect I can get this
finished this weekend...

Paul




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Processed: tagging 739685

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tags 739685 - security
Bug #739685 [flashplugin-nonfree] flashplugin-nonfree: updater fails to 
download fp.11.2.202.341.sha512.i386.pgp.asc
Removed tag(s) security.
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Processed: your mail

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tag 738414 + pending
Bug #738414 [src:testrepository] testrepository: FTBFS: Can't locate 
Debian/Debhelper/Buildsystem/pybuild.pm in @INC
Ignoring request to alter tags of bug #738414 to the same tags previously set
 thanks
Stopping processing here.

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Bug#736105: Sourceless file

2014-02-21 Thread Markus Koschany
Control: tags -1 patch


New revision without the sourceless file is available at mentors:

http://mentors.debian.net/debian/pool/main/f/freemind/freemind_0.9.0+dfsg2-1.dsc


See also this discussion on the debian-java mailing list

https://lists.debian.org/debian-java/2014/02/msg00057.html

Markus



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Processed: Sourceless file

2014-02-21 Thread Debian Bug Tracking System
Processing control commands:

 tags -1 patch
Bug #736105 [src:freemind] Sourceless file
Added tag(s) patch.

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Bug#736082: marked as done (fennics depends on ufc-doc which is no longer built by current ufc source package)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 13:55:59 +0100
with message-id 
caljqy_en1sqz8tguu+id-0dl7sxpt3gryo9xwddwtxz-umb...@mail.gmail.com
and subject line 
has caused the Debian Bug report #736082,
regarding fennics depends on ufc-doc which is no longer built by current ufc 
source package
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---

Package: fenics
Severity: serious
Tags: jessie, sid

Fenics depends on ufc-doc. The version of the ufc source package in 
jessie and sid no longer builds this binary package.
---End Message---
---BeginMessage---
Package: fenics
Version: 1:1.3.0.1
thanks

This bug was fixed in the latest upload of fenics (forgot to close the
bug in the changelog).

Johannes---End Message---


Bug#735794: marked as done (dolfin: FTBFS: Could not find a configuration file for package UFC )

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 14:07:56 +0100
with message-id 
CALjQY_HdJj-Xt9P=kF+rkSZ=v_f1pqvhso1dkykwpb-p1tu...@mail.gmail.com
and subject line fixed: dolfin: FTBFS: Could not find a configuration file for 
package UFC
has caused the Debian Bug report #735794,
regarding dolfin: FTBFS: Could not find a configuration file for package UFC 
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---
Source: dolfin
Version: 1.2.0+dfsg-4
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140114 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
 make[1]: Entering directory `/«BUILDDIR»/dolfin-1.2.0+dfsg'
 for v in python2.7; do \
   dh_auto_configure 
 --builddirectory=/«BUILDDIR»/dolfin-1.2.0+dfsg/debian/build-$v -- \
  -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/$v \
  -D PYTHON_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/lib$v.so \
  -D PYTHON_INCLUDE_DIR:PATH=/usr/include/$v \
  -D PYTHON_INCLUDE_DIR2:PATH=/usr/include/x86_64-linux-gnu/$v \
  -- -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo -D 
 BUILD_SHARED_LIBS:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D 
 CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D DOLFIN_ENABLE_TRILINOS:BOOL=OFF 
 -D DOLFIN_ENABLE_CGAL:BOOL=ON -D DOLFIN_ENABLE_HDF5:BOOL=ON -D 
 DOLFIN_ENABLE_VTK:BOOL=ON -D DOLFIN_ENABLE_QT:BOOL=ON -D 
 DOLFIN_ENABLE_PARMETIS:BOOL=OFF -D DOLFIN_ENABLE_PASTIX:BOOL=OFF -D 
 DOLFIN_ENABLE_UNIT_TESTS:BOOL=OFF -D 
 SWIG_EXECUTABLE:FILEPATH=/usr/bin/swig2.0 -D DOLFIN_ENABLE_MPI:BOOL=ON -D 
 PETSC_DIR:PATH=/usr/lib/petscdir/3.4.2 -D 
 SLEPC_DIR:PATH=/usr/lib/slepcdir/3.4.2 /«BUILDDIR»/dolfin-1.2.0+dfsg/ ;\
   done
 -- The C compiler identification is GNU 4.8.2
 -- The CXX compiler identification is GNU 4.8.2
 -- Check for working C compiler: /usr/bin/cc
 -- Check for working C compiler: /usr/bin/cc -- works
 -- Detecting C compiler ABI info
 -- Detecting C compiler ABI info - done
 -- Check for working CXX compiler: /usr/bin/c++
 -- Check for working CXX compiler: /usr/bin/c++ -- works
 -- Detecting CXX compiler ABI info
 -- Detecting CXX compiler ABI info - done
 -- Performing Test HAVE_PIPE
 -- Performing Test HAVE_PIPE - Success
 -- Performing Test HAVE_PEDANTIC
 -- Performing Test HAVE_PEDANTIC - Success
 -- Performing Test HAVE_STD
 -- Performing Test HAVE_STD - Success
 -- Performing Test HAVE_DEBUG
 -- Performing Test HAVE_DEBUG - Success
 -- Performing Test HAVE_O2_OPTIMISATION
 -- Performing Test HAVE_O2_OPTIMISATION - Success
 -- The Fortran compiler identification is GNU
 -- Check for working Fortran compiler: /usr/bin/gfortran
 -- Check for working Fortran compiler: /usr/bin/gfortran  -- works
 -- Detecting Fortran compiler ABI info
 -- Detecting Fortran compiler ABI info - done
 -- Checking whether /usr/bin/gfortran supports Fortran 90
 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
 -- Found MPI_C: 
 /usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
   
 -- Found MPI_CXX: 
 /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
   
 -- Found MPI_Fortran: 
 /usr/lib/libmpi_f90.so;/usr/lib/libmpi_f77.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
   
 -- Try OpenMP C flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Try OpenMP CXX flag = [-fopenmp]
 -- Performing Test OpenMP_FLAG_DETECTED
 -- Performing Test OpenMP_FLAG_DETECTED - Success
 -- Found OpenMP: -fopenmp  
 -- Performing Test OPENMP_UINT_TEST_RUNS
 -- Performing Test OPENMP_UINT_TEST_RUNS - Success
 -- Boost version: 1.54.0
 -- Found the following Boost libraries:
 --   filesystem
 --   program_options
 --   system
 --   thread
 --   iostreams
 --   mpi
 --   serialization
 --   timer
 --   chrono
 CMake Error at CMakeLists.txt:251 (message):
   Could not find a configuration file for package UFC that is compatible with
   requested version 2.2.0.
 
   Set UFC_DIR to the directory containing a CMake configuration file for UFC.
 
 
 -- Configuring incomplete, errors occurred!
 See also 
 /«BUILDDIR»/dolfin-1.2.0+dfsg/debian/build-python2.7/CMakeFiles/CMakeOutput.log.
 dh_auto_configure: cmake ../.. -DCMAKE_INSTALL_PREFIX=/usr 
 -DCMAKE_VERBOSE_MAKEFILE=ON 

Bug#739614: marked as done ([apache2] unable to execute apache2)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 14:16:50 +0100
with message-id 530751c2.3000...@debian.org
and subject line Re: Bug#739614: [apache2] unable to execute apache2
has caused the Debian Bug report #739614,
regarding [apache2] unable to execute apache2
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---
Package: apache2
Version: 2.4.7-1
Severity: grave

--- Please enter the report below this line. ---
It is impossible execute Apache2 and the log files are empty!
Apache has been installed using synaptic.

Please ask to me if you need more informaitons.

Thanks
Marco Righi

--- System information. ---
Architecture: amd64
Kernel:   Linux 3.12-1-amd64

Debian Release: jessie/sid
  500 testing-updates ftp.it.debian.org
  500 testing www.deb-multimedia.org
  500 testing security.debian.org
  500 testing ftp.it.debian.org
  500 testing apt.jenslody.de
  500 stable  repo.wuala.com
  500 stable  apt.spideroak.com
  500 sid linux.dropbox.com
  500 debian  packages.linuxmint.com
  100 jessie-backports ftp.it.debian.org

--- Package information. ---
Depends(Version) | Installed
-+-=
lsb-base | 4.1+Debian12
procps   | 1:3.3.9-2
perl | 5.18.2-2
mime-support | 3.54
apache2-bin  (= 2.4.7-1) | 2.4.7-1
apache2-data (= 2.4.7-1) | 2.4.7-1
lsb-base | 4.1+Debian12
procps   | 1:3.3.9-2
perl | 5.18.2-2
mime-support | 3.54
apache2-bin  (= 2.4.7-1) | 2.4.7-1
apache2-data (= 2.4.7-1) | 2.4.7-1
libapr1   (= 1.5.0) | 1.5.0-1
libaprutil1   (= 1.5.0) | 1.5.3-1
libaprutil1-dbd-sqlite3  | 1.5.3-1
 OR libaprutil1-dbd-mysql|
 OR libaprutil1-dbd-odbc |
 OR libaprutil1-dbd-pgsql|
 OR libaprutil1-dbd-freetds  |
libaprutil1-ldap | 1.5.3-1
libc6  (= 2.14) |
libldap-2.4-2 (= 2.4.7) |
liblua5.1-0  |
libpcre3   (= 8.10) |
libssl1.0.0   (= 1.0.1) |
libxml2   (= 2.7.4) |
zlib1g  (= 1:1.1.4) |
perl | 5.18.2-2


Package Status  (Version) | Installed
=-+-===
apache2   | 2.4.7-1
apache2-bin   | 2.4.7-1


Recommends  (Version) | Installed
=-+-===
ssl-cert  | 1.0.33
ssl-cert  | 1.0.33


Suggests (Version) | Installed
==-+-===
www-browser|
apache2-doc|
apache2-suexec-pristine|
 OR apache2-suexec-custom  |
apache2-utils  | 2.4.7-1
www-browser|
apache2-doc|
apache2-suexec-pristine|
 OR apache2-suexec-custom  |
apache2-utils  | 2.4.7-1
www-browser|
apache2-doc|
apache2-suexec-pristine|
 OR apache2-suexec-custom  |



--- Output from package bug script ---
---End Message---
---BeginMessage---
On 21.02.2014 09:49, Marco Righi wrote:
 apachectl start
 
 Command 593 of 97 #apachectl start
 sh: 0: getcwd() failed: No such file or directory
 AH00558: apache2: Could not reliably determine the server's fully
 qualified domain name, using 2a00:1620:c0:50:f66d:4ff:fe74:f12c. Set
 the 'ServerName' directive globally to suppress this message
 (98)Address already in use: AH00072: make_sock: could not bind to
 address [::]:80
 (98)Address already in use: AH00072: make_sock: could not bind to
 address 0.0.0.0:80
 no listening sockets available, shutting down
 AH00015: Unable to open logs
 Action 'start' failed.
 The Apache error log may have more information.

This is not a bug. You do have a web server running already on port 80,
on both IPv4 and IPv6. Perhaps you installed nginx, 

Bug#733352: Should we create a seqan1.3 package for bowtie and tophat

2014-02-21 Thread Andreas Tille
Hi,

since both packages bowtie (1.0!) and tophat stopped building from
source since we switched to seqan 1.4 (both bug reports in CC) and
upstream of both programs did not responded since  three weeks I wonder
whether we should reintroduce a seqan 1.3 package to be able to build
the packages again.  As far as I understood both have some relevance in
several workflows and we should not leave these with release critical
bugs.

Any opinions?

Kind regards

   Andreas.

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Bug#739697: src:dolfin: FTBFS on armhf and mips: virtual memory exhausted: Cannot allocate memory

2014-02-21 Thread Sébastien Villemot
Package: src:dolfin
Version: 1.3.0+dfsg-1
Severity: serious

Dear Maintainer,

dolfin currently FTBFS on armhf and mips:

[ 70%] Building CXX object 
dolfin/CMakeFiles/dolfin.dir/generation/PolyhedralMeshGenerator.cpp.o
cd /«BUILDDIR»/dolfin-1.3.0+dfsg/debian/build-python2.7/dolfin  /usr/bin/c++  
 -DBOOST_UBLAS_NDEBUG -DDOLFIN_GIT_COMMIT_HASH=\unknown\ 
-DDOLFIN_VERSION=\1.3.0\ -DHAS_CGAL -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI 
-DHAS_OPENMP -DHAS_PETSC -DHAS_QT4 -DHAS_QVTK -DHAS_SCOTCH -DHAS_SLEPC 
-DHAS_UMFPACK -DHAS_VTK -DHAS_ZLIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 
-D_BSD_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE 
-D_LARGEFILE_SOURCE -Ddolfin_EXPORTS -g -O2 -fstack-protector 
--param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  
 -Wno-deprecated  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat 
-Werror=format-security -D_FORTIFY_SOURCE=2  -frounding-math  -fopenmp -O2 -g 
-DNDEBUG -fPIC -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtGui 
-isystem /usr/include/qt4/QtCore -isystem /usr/include/vtk-5.8 
-I/«BUILDDIR»/dolfin-1.3.0+dfsg -I/usr/include/libxml2 
-I/usr/lib/slepcdir/3.4.2 
-I/usr/lib/slepcdir/3.4.2/linux-gnueabihf-c-opt/include 
-I/usr/lib/slepcdir/3.4.2/include -isystem /usr/include/suitesparse -isystem 
/usr/include/scotch -isystem /usr/lib/openmpi/include -isystem 
/usr/lib/openmpi/include/openmpi -isystem /usr/include/eigen3 -isystem 
/usr/lib/petscdir/3.4.2/include -isystem 
/usr/lib/petscdir/3.4.2/linux-gnueabihf-c-opt/include-o 
CMakeFiles/dolfin.dir/generation/PolyhedralMeshGenerator.cpp.o -c 
/«BUILDDIR»/dolfin-1.3.0+dfsg/dolfin/generation/PolyhedralMeshGenerator.cpp
virtual memory exhausted: Cannot allocate memory

Apparently the C++ compiler cannot deal with that source file within reasonable
memory bounds.

There are various possible solutions among which: simplifying the source file,
deactivating the corresponding functionality on those archs, trying another
compiler or compiler version, removing dolfin from those archs…

Cheers,

-- 
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: :' :Debian Developer
`. `' http://www.dynare.org/sebastien
  `-  GPG Key: 4096R/381A7594


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Bug#739663: Processed: libboinc7: fails to upgrade from 'wheezy' - trying to overwrite /usr/lib/libboinc_zip.so.7

2014-02-21 Thread Gianfranco Costamagna
Hi Andreas,

I tried to add a Break+Replaces, but it didn't work, I think because now 
boinc-dev is not a real package anymore, just a transition virtual package.

For this reason I only added a breaks on libboinc7, and I tested on a virtual 
machine.

It seems to be working, but this is the first time I play with breaks/replaces 
fields, so I might be wrong somewhere.

this is the commit, I'll upload a version in the next few days if no answer, 
since I think this bug is pretty serious.

http://anonscm.debian.org/gitweb/?p=pkg-boinc/boinc.git;a=commitdiff;h=c993dd1d92d58a03562c52c3d2f8b180303eb84f

Can I kindly ask you to review the patch?

many thanks,


Gianfranco 




Il Venerdì 21 Febbraio 2014 2:51, Debian Bug Tracking System 
ow...@bugs.debian.org ha scritto:
 
Processing control commands:

 affects -1 + boinc-dev
Bug #739663 [libboinc7] libboinc7: fails to upgrade from 'wheezy' - trying to 
overwrite /usr/lib/libboinc_zip.so.7
Added indication that 739663 affects boinc-dev

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Bug#739631: [Help] Bug#739631: python-pysam: FTBFS: ImportError: No module named pysam

2014-02-21 Thread Piotr Ożarowski
/me continues promoting pybuild:
-- 
Piotr Ożarowski Debian GNU/Linux Developer
www.ozarowski.pl  www.griffith.cc   www.debian.org
GPG Fingerprint: 1D2F A898 58DA AF62 1786 2DF7 AEF6 F1A2 A745 7645
diff --git a/debian/control b/debian/control
index 8699486..c9acaaf 100644
--- a/debian/control
+++ b/debian/control
@@ -6,6 +6,7 @@ Section: python
 XS-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (= 9),
+   dh-python,
python-all-dev,
python-setuptools,
cython,
diff --git a/debian/rules b/debian/rules
index 50d4cad..aaf270f 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,19 +1,12 @@
 #!/usr/bin/make -f
 
-# Hint:
-#   https://wiki.debian.org/Python/LibraryStyleGuide
-# suggests:
 export PYBUILD_NAME=pysam
-# which probably does not harm but due to the fact that there is
-# some additional binary package a debian/python-pysam.install
-# file is definitely needed.
 
 DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
 TESTPKG:= $(DEBPKGNAME)-tests
-pybuilddir := $(CURDIR)/build/lib.$(shell dpkg-architecture -qDEB_BUILD_ARCH_OS)-$(shell dpkg-architecture -qDEB_BUILD_GNU_CPU)
 
 %:
-	dh $@ --with python2
+	dh $@ --with python2 --buildsystem=pybuild
 
 # Cython is recreating some c-files.  To enable building twice in a row these
 # will be saved in advance and restored afterwards
@@ -33,14 +26,10 @@ override_dh_auto_build: debian/savefiles
 	dh_auto_build
 
 override_dh_auto_test:
-	dh_auto_test
-	chmod a+x tests/pysam_test_offline.py
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-	set -e -x;\
-	for pyv in `pyversions -dv` ; do \
-	cd tests  env PYTHONPATH=$(pybuilddir)-$${pyv} ./pysam_test_offline.py ; \
-	done
-endif
+	dh_auto_test  # default tests
+	PYBUILD_SYSTEM=custom \
+	PYBUILD_TEST_ARGS=cd tests  PYTHONPATH={build_dir} {interpreter} ./pysam_test_offline.py \
+	dh_auto_test --buildsystem=pybuild
 
 override_dh_install-indep:
 	dh_install -p $(TESTPKG)


Bug#738414: marked as done (testrepository: FTBFS: Can't locate Debian/Debhelper/Buildsystem/pybuild.pm in @INC)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 13:48:48 +
with message-id e1wgqta-000754...@franck.debian.org
and subject line Bug#738414: fixed in testrepository 0.0.18-2
has caused the Debian Bug report #738414,
regarding testrepository: FTBFS: Can't locate 
Debian/Debhelper/Buildsystem/pybuild.pm in @INC
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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---BeginMessage---
Source: testrepository
Version: 0.0.18-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140208 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
  fakeroot debian/rules clean
 dh clean --with python2 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
 dh_auto_clean: unable to load build system class 'pybuild': Can't locate 
 Debian/Debhelper/Buildsystem/pybuild.pm in @INC (you may need to install the 
 Debian::Debhelper::Buildsystem::pybuild module) (@INC contains: /etc/perl 
 /usr/local/lib/perl/5.18.2 /usr/local/share/perl/5.18.2 /usr/lib/perl5 
 /usr/share/perl5 /usr/lib/perl/5.18 /usr/share/perl/5.18 
 /usr/local/lib/site_perl .) at (eval 4) line 2.
 BEGIN failed--compilation aborted at (eval 4) line 2.
 
 make: *** [clean] Error 2

The full build log is available from:
   
http://aws-logs.debian.net/ftbfs-logs/2014/02/08/testrepository_0.0.18-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
---End Message---
---BeginMessage---
Source: testrepository
Source-Version: 0.0.18-2

We believe that the bug you reported is fixed in the latest version of
testrepository, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 738...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Tristan Seligmann mithra...@debian.org (supplier of updated testrepository 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Fri, 21 Feb 2014 14:16:40 +0200
Source: testrepository
Binary: testrepository python-testrepository
Architecture: source all
Version: 0.0.18-2
Distribution: sid
Urgency: medium
Maintainer: Python Applications Packaging Team 
python-apps-t...@lists.alioth.debian.org
Changed-By: Tristan Seligmann mithra...@debian.org
Description: 
 python-testrepository - Database of test results - python library
 testrepository - Test result manager
Closes: 738414
Changes: 
 testrepository (0.0.18-2) unstable; urgency=medium
 .
   * Add missing build dependency on dh-python (closes: #738414).
 - Thanks to Hideki Yamane for the patch.
Checksums-Sha1: 
 692b9f49adbe5bdb533dd1382dd3e8783f373b65 2167 testrepository_0.0.18-2.dsc
 daebe65b85743eb98c3d572b90630d3b82321c7d 13652 
testrepository_0.0.18-2.debian.tar.xz
 8daf11b27841a3196872c860d9bf9caae9d441ef 20146 testrepository_0.0.18-2_all.deb
 bd3a8a132880650dc1c5fdb04f57c41214104283 64616 
python-testrepository_0.0.18-2_all.deb
Checksums-Sha256: 
 a6d7d7a9ac96fdfe1301d0402a21d97ac72fec7253d826f2793491553013 2167 
testrepository_0.0.18-2.dsc
 1d106656483881fc0611bcd8b25d579acf204fc4f02b27f487127a3dca481868 13652 
testrepository_0.0.18-2.debian.tar.xz
 28d2fc4131096fa6529510601c1b12a4b279914ec8243aa18e63814421bda5a7 20146 
testrepository_0.0.18-2_all.deb
 e66b21085481c87917d97760a8ace1fb568c73b9094d46669b1c3416a27ae94d 64616 
python-testrepository_0.0.18-2_all.deb
Files: 
 a0a245a732c5687ef93c7765f5894468 2167 python optional 
testrepository_0.0.18-2.dsc
 01065a26395bb4dab600c89d117ca133 13652 python optional 
testrepository_0.0.18-2.debian.tar.xz
 0f1d8e93d1e2ca4187d2603fcb6566d8 20146 python optional 
testrepository_0.0.18-2_all.deb
 87c58e63cdc5794250c2f6fcbb4b3cc1 64616 python optional 

Bug#739663: Processed: libboinc7: fails to upgrade from 'wheezy' - trying to overwrite /usr/lib/libboinc_zip.so.7

2014-02-21 Thread Andreas Beckmann
On 2014-02-21 14:37, Gianfranco Costamagna wrote:
 Hi Andreas,
 
 I tried to add a Break+Replaces, but it didn't work, 

How did this look like? And how did it fail?

 I think because now boinc-dev is not a real package anymore, just a 
 transition virtual package.

Since the B+R you add are versioned, they only match against real
packages. And the old one is a real package.

 For this reason I only added a breaks on libboinc7, and I tested on a 
 virtual machine.

 It seems to be working, but this is the first time I play with 
 breaks/replaces fields, so I might be wrong somewhere.

This probably breaks if I torture-test it :-) And it will definitely
break in case you add a transitional boing-dev package.

 this is the commit, I'll upload a version in the next few days if no answer, 
 since I think this bug is pretty serious.
 
 http://anonscm.debian.org/gitweb/?p=pkg-boinc/boinc.git;a=commitdiff;h=c993dd1d92d58a03562c52c3d2f8b180303eb84f
 
 Can I kindly ask you to review the patch?

7.0.39+dfsg-1 is the version that split up boinc-dev? And this was the
first upload of the new 7.0.39+dfsg upstream, i.e. there have not been
any 7.0.39+dfsg-1~experimental0 or similar versions?

So each package that got a bit of the previous content (and ships it at
the same location) should have
  Breaks: boinc-dev ( 7.0.39+dfsg)
  Replaces: boinc-dev ( 7.0.39+dfsg)
(in addition to other B+R it might already have).

(this review is based solely on your reply and the commitdiff you
linked, I haven't looked at the boinc package in more detail, but I
might take a further look at the weekend)

Andreas


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Processed: Duplicate

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 forcemerge 714296 737770
Bug #714296 [dia] dia: pdf export broken for text elements, example attached
Bug #737770 [dia] dia: Exporting from  *.dia to *.PNG is broken
Set Bug forwarded-to-address to 
'https://bugzilla.gnome.org/show_bug.cgi?id=573261'.
Marked as found in versions dia/0.97.2-13.
Bug #714296 [dia] dia: pdf export broken for text elements, example attached
Marked as found in versions dia/0.97.2-15.
Added tag(s) upstream.
Merged 714296 737770
 severity 714296 serious
Bug #714296 [dia] dia: pdf export broken for text elements, example attached
Bug #737770 [dia] dia: Exporting from  *.dia to *.PNG is broken
Severity set to 'serious' from 'important'
Severity set to 'serious' from 'important'
 thanks
Stopping processing here.

Please contact me if you need assistance.
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737770: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737770
Debian Bug Tracking System
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Bug#733352: [Debian-med-packaging] Bug#733398: Should we create a seqan1.3 package for bowtie and tophat

2014-02-21 Thread Olivier Sallou

On 02/21/2014 02:21 PM, Andreas Tille wrote:
 Hi,

 since both packages bowtie (1.0!) and tophat stopped building from
 source since we switched to seqan 1.4 (both bug reports in CC) and
 upstream of both programs did not responded since  three weeks I wonder
 whether we should reintroduce a seqan 1.3 package to be able to build
 the packages again.  As far as I understood both have some relevance in
 several workflows and we should not leave these with release critical
 bugs.
those programs are indeed commonly used in bioinformatics  and are
really necessary.
Keeping an older version of seqan would be a good idea.

Olivier

 Any opinions?

 Kind regards

Andreas.


-- 
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IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95

gpg key id: 4096R/326D8438  (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335  D26D 78DC 68DB 326D 8438


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Bug#709852: marked as done (gridengine-common: postinst uses /usr/share/doc content (Policy 12.3): /usr/share/doc/gridengine-common/examples/gridengine.default)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 15:36:14 +
with message-id e1wgs98-000278...@franck.debian.org
and subject line Bug#709852: fixed in gridengine 6.2u5-7.3
has caused the Debian Bug report #709852,
regarding gridengine-common: postinst uses /usr/share/doc content (Policy 
12.3): /usr/share/doc/gridengine-common/examples/gridengine.default
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: gridengine-common
Version: 6.2u5-7.1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

a test with piuparts revealed that your package uses files from
/usr/share/doc in its maintainer scripts which is a violation of
Policy 12.3: Packages must not require the existence of any files in
/usr/share/doc/ in order to function.
http://www.debian.org/doc/debian-policy/ch-docs.html#s12.3

These files must be moved to /usr/share/$PACKAGE and may be symlinked
from /usr/share/doc/$PACKAGE.

This piuparts tests prevents the installation of (most) files into
/usr/share/doc with 'dpkg --path-exclude=...'.

From the attached log (scroll to the bottom...):

  Selecting previously unselected package gridengine-common.
  (Reading database ... 7142 files and directories currently installed.)
  Unpacking gridengine-common (from .../gridengine-common_6.2u5-7.1_all.deb) ...
  Setting up gridengine-common (6.2u5-7.1) ...
  sed: can't read /usr/share/doc/gridengine-common/examples/gridengine.default: 
No such file or directory
  dpkg: error processing gridengine-common (--configure):
   subprocess installed post-installation script returned error exit status 2
  Errors were encountered while processing:
   gridengine-common


Cheers,

Andreas


gridengine-common_6.2u5-7.1.log.gz
Description: GNU Zip compressed data
---End Message---
---BeginMessage---
Source: gridengine
Source-Version: 6.2u5-7.3

We believe that the bug you reported is fixed in the latest version of
gridengine, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 709...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ondřej Surý ond...@debian.org (supplier of updated gridengine package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Tue, 11 Feb 2014 15:16:55 +0100
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-drmaa1.0 libdrmaa-java gridengine-drmaa-dev
Architecture: source all amd64
Version: 6.2u5-7.3
Distribution: unstable
Urgency: medium
Maintainer: Debian Grid Engine Maintainers 
pkg-gridengine-de...@lists.alioth.debian.org
Changed-By: Ondřej Surý ond...@debian.org
Description: 
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-drmaa-dev - Distributed resource management Application API library
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa-java - Distributed resource management Application API library - Java 
bi
Closes: 709852
Changes: 
 gridengine (6.2u5-7.3) unstable; urgency=medium
 .
   * Non-maintainer upload.
   * Build depend on libdb-dev to fix near future FTBFS
 + Remove checking for unused Berkeley DB return codes that got removed
   in Berkeley DB 5.2
   * Install gridengine.default to /usr/share/gridengine (Closes: #709852)
   * Refresh debian/patches to have quilt apply patches cleanly
Checksums-Sha1: 
 0c6825097ca20965298f970901cb5aab7fa6b0d9 1969 gridengine_6.2u5-7.3.dsc
 942618a5d6d1dd86931cefa7e709bca5c736ac62 51247 gridengine_6.2u5-7.3.diff.gz
 20a0e9c33dc4e7310ce3c3a0e09e8f077c2fb7ab 414892 
gridengine-common_6.2u5-7.3_all.deb
 40d39826442d565303bd4707b15eee0e4585de8d 3493396 
gridengine-client_6.2u5-7.3_amd64.deb
 0744c6801314345fada1641c3e9027117b56 1348102 

Bug#733556:

2014-02-21 Thread Mathieu Malaterre
Just FYI, here is how to fix the current package:

$ wget 
http://ftp.de.debian.org/debian/pool/main/w/wine/wine-bin_1.4.1-4_i386.deb
$ dpkg-deb -x wine-bin_1.4.1-4_i386.deb bla
$ sudo cp bla/usr/share/binfmts/wine /usr/share/binfmts
$ sudo /usr/sbin/update-binfmts --import wine

Enjoy


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Processed: vdpau-video: FTBFS: utils_glx.h:163:5: error: unknown type name 'PFNGLMULTITEXCOORD2FPROC'

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tags 713612 patch
Bug #713612 [src:vdpau-video] vdpau-video: FTBFS: utils_glx.h:163:5: error: 
unknown type name 'PFNGLMULTITEXCOORD2FPROC'
Added tag(s) patch.
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#717986: marked as done (crmsh: fails to upgrade from 'sid' - trying to overwrite /usr/sbin/crm)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 16:36:23 +
with message-id e1wgt5l-00047k...@franck.debian.org
and subject line Bug#717986: fixed in crmsh 1.2.6+git+e77add-1
has caused the Debian Bug report #717986,
regarding crmsh: fails to upgrade from 'sid' - trying to overwrite /usr/sbin/crm
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: crmsh
Version: 1.2.5+hg953-2
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts
Control: affects -1 + pacemaker

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'sid' to 'experimental'.
It installed fine in 'sid', then the upgrade to 'experimental' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
http://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces

From the attached log (scroll to the bottom...):

  Selecting previously unselected package crmsh.
  Unpacking crmsh (from .../crmsh_1.2.5+hg953-2_amd64.deb) ...
  dpkg: error processing /var/cache/apt/archives/crmsh_1.2.5+hg953-2_amd64.deb 
(--unpack):
   trying to overwrite '/usr/sbin/crm', which is also in package pacemaker 
1.1.7-2.1
  dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
  Errors were encountered while processing:
   /var/cache/apt/archives/crmsh_1.2.5+hg953-2_amd64.deb


cheers,

Andreas


pacemaker=1.1.7-2.1_crmsh=1.2.5+hg953-2.log.gz
Description: GNU Zip compressed data
---End Message---
---BeginMessage---
Source: crmsh
Source-Version: 1.2.6+git+e77add-1

We believe that the bug you reported is fixed in the latest version of
crmsh, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 717...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Martin Loschwitz madk...@debian.org (supplier of updated crmsh package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Fri, 21 Feb 2014 15:51:13 +
Source: crmsh
Binary: crmsh
Architecture: source amd64
Version: 1.2.6+git+e77add-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HA Maintainers 
debian-ha-maintain...@lists.alioth.debian.org
Changed-By: Martin Loschwitz madk...@debian.org
Description: 
 crmsh  - CRM shell for the pacemaker cluster manager
Closes: 717986 738651
Changes: 
 crmsh (1.2.6+git+e77add-1) unstable; urgency=medium
 .
   * New upstream checkout
   * debian/control: Bump Standards-Version
   * debian/control: Add Breaks  Replaces for Pacemaker  1.1.8
 Closes: 717986
   * debian/control: Depend on python-lxml
 Closes: 738651
Checksums-Sha1: 
 4acb1cf121fccb166f0b0ec3f651b626adcbdd82 1502 crmsh_1.2.6+git+e77add-1.dsc
 34d1212855f46828ceb9d8fdaa877469245c48fd 663839 
crmsh_1.2.6+git+e77add.orig.tar.gz
 d361049697bd615338ae331da1bf4ea45e66a190 2732 
crmsh_1.2.6+git+e77add-1.debian.tar.xz
 db02f6dc27a82fe7ad2d06bc57c84acc72968878 340328 
crmsh_1.2.6+git+e77add-1_amd64.deb
Checksums-Sha256: 
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crmsh_1.2.6+git+e77add-1.dsc
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crmsh_1.2.6+git+e77add-1.debian.tar.xz
 93a0b941849fcd503a749be842b6c600ea7c3d848b798b769168d33e7d773ac7 340328 
crmsh_1.2.6+git+e77add-1_amd64.deb
Files: 
 47b023cf231336d008e93f068ddcad3b 1502 admin extra crmsh_1.2.6+git+e77add-1.dsc
 e059da008818735e3fb9ca241379a266 663839 admin extra 
crmsh_1.2.6+git+e77add.orig.tar.gz
 181b35fcdfef2e4f8fe7ae90de29021a 2732 admin extra 
crmsh_1.2.6+git+e77add-1.debian.tar.xz
 0ef40a25f603464f081404287d79cff7 340328 admin extra 
crmsh_1.2.6+git+e77add-1_amd64.deb

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Bug#651309: warzone2100: diff for NMU version 3.1~beta11-2.1

2014-02-21 Thread Sebastian Ramacher
On 2014-02-20 00:51:31, Andreas Beckmann wrote:
 On Wednesday, 15. January 2014 22:29:31 Sebastian Ramacher wrote:
  I've prepared an NMU for warzone2100 (versioned as 3.1~beta11-2.1) and
  uploaded it to DELAYED/2. Please feel free to tell me if I
  should delay it longer.
 
 Hi Sebastian,
 
 do you plan to fix this in experimental, too?

No. The miniupnpc is done from my point of view.

Regards
-- 
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Description: Digital signature


Processed: your mail

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tag 739076 + pending
Bug #739076 [src:pyopenssl] pyopenssl: FTBFS: I can't find file `ecrm1000'.
Added tag(s) pending.
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#739663: Processed: libboinc7: fails to upgrade from 'wheezy' - trying to overwrite /usr/lib/libboinc_zip.so.7

2014-02-21 Thread Gianfranco Costamagna


Il Venerdì 21 Febbraio 2014 14:54, Andreas Beckmann a...@debian.org ha 
scritto:

On 2014-02-21 14:37, Gianfranco Costamagna wrote:
 Hi Andreas,
 
 I tried to add a Break+Replaces, but it didn't work, 

How did this look like? And how did it fail?


I dont't honestly remember, it failed with almost the same error, or something 
related to a missing boinc-dev package


 I think because now boinc-dev is not a real package anymore, just a 
 transition virtual package.

Since the B+R you add are versioned, they only match against real
packages. And the old one is a real package.

 For this reason I only added a breaks on libboinc7, and I tested on a 
 virtual machine.

 It seems to be working, but this is the first time I play with 
 breaks/replaces fields, so I might be wrong somewhere.

This probably breaks if I torture-test it :-) And it will definitely
break in case you add a transitional boing-dev package.


mmm this is something I don't understand, and moreover the problem is that I 
manually try to upgrade packages with dpkg, and in this case I needed to add 
manually libboinc7 IIRC to the list.

So I don't know exactly how to test for this bug, this is why help is really 
needed ;)


 this is the commit, I'll upload a version in the next few days if no answer, 
 since I think this bug is pretty serious.
 
 http://anonscm.debian.org/gitweb/?p=pkg-boinc/boinc.git;a=commitdiff;h=c993dd1d92d58a03562c52c3d2f8b180303eb84f
 
 Can I kindly ask you to review the patch?

7.0.39+dfsg-1 is the version that split up boinc-dev? And this was the
first upload of the new 7.0.39+dfsg upstream, i.e. there have not been
any 7.0.39+dfsg-1~experimental0 or similar versions?

this is the version that has some library moved from one package to another, 
no, this is the first upload, nothing in experimental

So each package that got a bit of the previous content (and ships it at
the same location) should have
  Breaks: boinc-dev ( 7.0.39+dfsg)
  Replaces: boinc-dev ( 7.0.39+dfsg)
(in addition to other B+R it might already have).

ok, this seems reasonable, but we moved the libraries many times between 
versions, that boinc-dev, the libboinc introduction, the split between client 
and server libraries, the server-maker package introduction...

Boinc has grown a lot since the old package, this is why I'm having this kind 
of troubles in thinking in a clean way for upgrade, the same can happen I 
think even in ubuntu, with different versions and so different files overridden.

I don't like to fix just this bug and have a transition failure between 
somebody with backports enabled or other different repository.

I hope to have explained my (maybe wrong, I'm here to learn :p) point

thanks for your support and bug report so far!

Cheers,

Gianfranco



(this review is based solely on your reply and the commitdiff you
linked, I haven't looked at the boinc package in more detail, but I
might take a further look at the weekend)


Andreas







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Bug#739145: marked as done (xul-ext-sieve: directory vs. symlink conflict: /usr/share/xul-ext/sieve/chrome/chromeFiles/content/libs/CodeMirror/lib)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 18:34:06 +
with message-id e1wguvg-000335...@franck.debian.org
and subject line Bug#739145: fixed in sieve-extension 0.2.3d-2
has caused the Debian Bug report #739145,
regarding xul-ext-sieve: directory vs. symlink conflict: 
/usr/share/xul-ext/sieve/chrome/chromeFiles/content/libs/CodeMirror/lib
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
739145: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739145
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: xul-ext-sieve
Version: 0.2.3d-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package installs files over
an existing symlink shipped or created by another package.

Installing something over existing symlinks is considered bad practice.
See e.g. http://lists.debian.org/87ehlevcrf@windlord.stanford.edu

It may break in subtle ways and dpkg cannot detect this as a problem.
* Your package might silently overwrite files installed at the symlink
  destination by other packages.
* If the package shipping the symlink decides to make the link point
  somewhere else (or turn it into a real directory), the files owned
  by your package will be lost somewhere in the filesystem.
* Depending on installation order the problematic path will be created
  either as a symlink or a directory: the package installed first will
  win and all others have lost.
  Note that dpkg intentionally does not replace directories with
  symlinks and vice versa, see in particular the end of point 4 in
  
http://www.debian.org/doc/debian-policy/ch-maintainerscripts.html#s-unpackphase
  (Note: Adding Pre-Depends is *not* a solution.)

This was observed during an upgrade from jessie to sid.

From the attached log (usually somewhere in the middle...):

0m41.7s ERROR: FAIL: silently overwrites files via directory symlinks:
  
/usr/share/xul-ext/sieve/chrome/chromeFiles/content/libs/CodeMirror/lib/codemirror.css
 (xul-ext-sieve) != /usr/share/javascript/codemirror/codemirror.css 
(libjs-codemirror)
  
/usr/share/xul-ext/sieve/chrome/chromeFiles/content/libs/CodeMirror/lib/codemirror.js
 (xul-ext-sieve) != /usr/share/javascript/codemirror/codemirror.js 
(libjs-codemirror)
  
/usr/share/xul-ext/sieve/chrome/chromeFiles/content/libs/CodeMirror/theme/eclipse.css
 (xul-ext-sieve) != /usr/share/javascript/codemirror/theme/eclipse.css 
(libjs-codemirror)

0m44.0s ERROR: FAIL: debsums reports modifications inside the chroot:
  /usr/share/javascript/codemirror/codemirror.css
  /usr/share/javascript/codemirror/codemirror.js


cheers,

Andreas


xul-ext-sieve_0.2.3d-1.log.gz
Description: GNU Zip compressed data
---End Message---
---BeginMessage---
Source: sieve-extension
Source-Version: 0.2.3d-2

We believe that the bug you reported is fixed in the latest version of
sieve-extension, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 739...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael Fladischer fladischermich...@fladi.at (supplier of updated 
sieve-extension package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 21 Feb 2014 12:16:33 +0100
Source: sieve-extension
Binary: xul-ext-sieve
Architecture: source all
Version: 0.2.3d-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Mozilla Extension Maintainers 
pkg-mozext-maintain...@lists.alioth.debian.org
Changed-By: Michael Fladischer fladischermich...@fladi.at
Description: 
 xul-ext-sieve - extension that implements the ManageSieve protocol
Closes: 739145
Changes: 
 sieve-extension (0.2.3d-2) unstable; urgency=medium
 .
   * Add preinst script to remove symlinked codemirror (Closes: #739145).
   * Add codemirror sieve mode license to d/copyright.
   * Do not install codemirror and sieve mode licenses.
Checksums-Sha1: 
 18e9ae2faaf16d43c6d2c43927e5da84b4ecf24e 2058 sieve-extension_0.2.3d-2.dsc
 21c101a6ecebd24fa5fd3c91c0908bbcaf59a765 16376 
sieve-extension_0.2.3d-2.debian.tar.xz
 9980ece513243be70d0be155e1c0468862b7d117 317832 xul-ext-sieve_0.2.3d-2_all.deb
Checksums-Sha256: 
 

Processed (with 1 errors): merge bugs

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 merge 739598 735833
Bug #739598 [pystache] pystache tests fail with python3.4
Unable to merge bugs because:
severity of #735833 is 'serious' not 'important'
package of #735833 is 'src:pystache' not 'pystache'
Failed to merge 739598: Did not alter merged bugs
Debbugs::Control::set_merged('transcript', 'GLOB(0x2b15f68)', 
'requester', 'Brian Murray br...@ubuntu.com', 'request_addr', 
'cont...@bugs.debian.org', 'request_msgid', 
'20140221203432.gc3...@murraytwins.com', 'request_subject', ...) called at 
/usr/local/lib/site_perl/Debbugs/Control/Service.pm line 538
eval {...} called at 
/usr/local/lib/site_perl/Debbugs/Control/Service.pm line 537
Debbugs::Control::Service::control_line('line', undef, 'clonebugs', 
'HASH(0x2ad92a0)', 'limit', 'HASH(0x2acf810)', 'common_control_options', 
'ARRAY(0x2acf858)', 'errors', ...) called at /usr/lib/debbugs/service line 474

 --
Stopping processing here.

Please contact me if you need assistance.
-- 
735833: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=735833
739598: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739598
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems


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Processed: Update gnome-orca bugs that are pending in svn

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 tags 712483 pending
Bug #712483 [gnome-orca] gnome-orca: recommends obsolete package gnome-mag
Added tag(s) pending.
 tags 732975 pending
Bug #732975 [gnome-orca] website update
Added tag(s) pending.
 tags 739188 pending
Bug #739188 [gnome-orca] gnome-orca: python-speechd is gone
Added tag(s) pending.
 thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
712483: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=712483
732975: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=732975
739188: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739188
Debian Bug Tracking System
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Bug#739076: marked as done (pyopenssl: FTBFS: I can't find file `ecrm1000'.)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 21:21:17 +
with message-id e1wgxx3-0006cr...@franck.debian.org
and subject line Bug#739076: fixed in pyopenssl 0.13.1-2
has caused the Debian Bug report #739076,
regarding pyopenssl: FTBFS: I can't find file `ecrm1000'.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
739076: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739076
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Source: pyopenssl
Version: 0.13.1-1
Severity: serious

From my pbuilder build log:

...
python tools/mkhowto --a4 --html --iconserver . pyOpenSSL.tex
+++ 
TEXINPUTS=.:/tmp/buildd/pyopenssl-0.13.1/doc:/tmp/buildd/pyopenssl-0.13.1/doc/tools/paper-a4:/tmp/buildd/pyopenssl-0.13.1/doc/tools/texinputs:
+++ latex pyOpenSSL
*** Session transcript and error messages are in pyOpenSSL.how.
The relevant lines from the transcript are:

+++ latex pyOpenSSL
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian)
 restricted \write18 enabled.
entering extended mode
(./pyOpenSSL.tex
LaTeX2e 2011/06/27
Babel 3.9h and hyphenation patterns for 2 languages loaded.
(/tmp/buildd/pyopenssl-0.13.1/doc/tools/texinputs/howto.cls
Document Class: howto 1998/02/25 Document class (Python HOWTO)
(/tmp/buildd/pyopenssl-0.13.1/doc/tools/paper-a4/pypaper.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)
Using fancier footers than usual.
(/tmp/buildd/pyopenssl-0.13.1/doc/tools/texinputs/python.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)))
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
(/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def)))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
kpathsea: Running mktextfm ecrm1000
/usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation 
 for ecrm1000.
/usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update ?
mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; nonstopmode; 
input ecrm1000
This is METAFONT, Version 2.718281 (TeX Live 2013/Debian)

kpathsea: Running mktexmf ecrm1000

! I can't find file `ecrm1000'.
* ...ljfour; mag:=1; nonstopmode; input ecrm1000
  
Please type another input file name
! Emergency stop.
* ...ljfour; mag:=1; nonstopmode; input ecrm1000
  
Transcript written on mfput.log.
grep: ecrm1000.log: No such file or directory
mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; nonstopmode; input 
ecrm1000' failed to make ecrm1000.tfm.
kpathsea: Appending font creation commands to missfont.log.

! Font T1/cmr/m/n/10=ecrm1000 at 10.0pt not loadable: Metric (TFM) file not fou
nd.
to be read again 
   relax 
l.100 \fontencoding\encodingdefault\selectfont
  
? 
! Emergency stop.
to be read again 
   relax 
l.100 \fontencoding\encodingdefault\selectfont
  
No pages of output.
Transcript written on pyOpenSSL.log.
*** Session transcript and error messages are in pyOpenSSL.how.
rm -rf html/
mkdir html/
mv *.html pyOpenSSL.css html/
mv: cannot stat '*.html': No such file or directory
mv: cannot stat 'pyOpenSSL.css': No such file or directory
make[2]: *** [html] Error 1
make[2]: Leaving directory `/tmp/buildd/pyopenssl-0.13.1/doc'
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory `/tmp/buildd/pyopenssl-0.13.1'
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
-- 
Daniel Schepler
---End Message---
---BeginMessage---
Source: pyopenssl
Source-Version: 0.13.1-2

We believe that the bug you reported is fixed in the latest version of
pyopenssl, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 739...@bugs.debian.org,
and the maintainer will reopen the bug report if 

Bug#713142: marked as done (ruby-dbus: FTBFS: ERROR: 'rake/gempackagetask' is obsolete and no longer supported. Use 'rubygems/package_task' instead.)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 21:50:43 +
with message-id e1wgxzx-zd...@franck.debian.org
and subject line Bug#713142: fixed in ruby-dbus 0.11.0-1
has caused the Debian Bug report #713142,
regarding ruby-dbus: FTBFS: ERROR: 'rake/gempackagetask' is obsolete and no 
longer supported. Use 'rubygems/package_task' instead.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
713142: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=713142
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Source: ruby-dbus
Version: 0.7.2-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130620 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
  debian/rules build
 dh build --buildsystem=ruby --with ruby
dh_testdir -O--buildsystem=ruby
dh_auto_configure -O--buildsystem=ruby
 /usr/lib/ruby/vendor_ruby/gem2deb.rb:17: warning: setting 
 Encoding.default_external
debian/rules override_dh_auto_build
 make[1]: Entering directory `/«PKGBUILDDIR»'
 dh_auto_build
 /usr/lib/ruby/vendor_ruby/gem2deb.rb:17: warning: setting 
 Encoding.default_external
 rake rdoc
 rake aborted!
 ERROR: 'rake/gempackagetask' is obsolete and no longer supported. Use 
 'rubygems/package_task' instead.
 /«PKGBUILDDIR»/Rakefile:3:in `top (required)'
 (See full trace by running task with --trace)
 make[1]: *** [override_dh_auto_build] Error 1

The full build log is available from:
   
http://aws-logs.debian.net/ftbfs-logs/2013/06/20/ruby-dbus_0.7.2-1_unstable.log

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
---End Message---
---BeginMessage---
Source: ruby-dbus
Source-Version: 0.11.0-1

We believe that the bug you reported is fixed in the latest version of
ruby-dbus, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 713...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Paul van Tilburg pau...@debian.org (supplier of updated ruby-dbus package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Fri, 21 Feb 2014 22:20:54 +0100
Source: ruby-dbus
Binary: ruby-dbus
Architecture: source all
Version: 0.11.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Ruby Extras Maintainers 
pkg-ruby-extras-maintain...@lists.alioth.debian.org
Changed-By: Paul van Tilburg pau...@debian.org
Description: 
 ruby-dbus  - Ruby binding for D-Bus
Closes: 713142 735731
Changes: 
 ruby-dbus (0.11.0-1) unstable; urgency=medium
 .
   * New upstream release:
 - Dropped Ruby 1.8.1 support; added 1.9.3 support
 - Anonymous authentication
 - Use Nokogiri for XML parsing (when available)
 - When calling methods, interface can be left unspecified if unambiguous
 - Ruby strings can be passed where byte arrays (ay) are expected
 - Many bugfixes
   * debian/control:
 - Drop transition packages and corresponding breaks/replaces/provides
   (closes: #735731)
 - Drop build-depend-indep on rake (no longer needed for documentation
   generation)
 - Add suggest on ruby-nokogiri as it it faster than REXML for
   introspection
 - Replace XB-Ruby-Version field by a depend on ruby | ruby-interpreter
 - Bump standards-version to 3.9.5; no changes required
   * debian/rules, debian/docs: update tutorial/reference generation
 (closes: #713142)
Checksums-Sha1: 
 d816a98ff9ebc4075a50155793a4c28e5ad88dc9 1396 ruby-dbus_0.11.0-1.dsc
 2c4b75002b651d9e0836192e23d6b37cd28a09a1 68638 ruby-dbus_0.11.0.orig.tar.gz
 f37b15623d270b136ceeec4e30bfb3a094958e9d 3780 ruby-dbus_0.11.0-1.debian.tar.xz
 c30a97b624a258eff6518355051cee9b73f245c9 123048 ruby-dbus_0.11.0-1_all.deb
Checksums-Sha256: 
 bee5a551b2cf44a5007bbf6289494cf6b2d851c1f9849123e4091585af3ffccc 1396 
ruby-dbus_0.11.0-1.dsc
 

Bug#739143: marked as done (xindy: FTBFS: I can't find file `ecrm1000'.)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Fri, 21 Feb 2014 21:50:53 +
with message-id e1wgxzh-00013i...@franck.debian.org
and subject line Bug#739143: fixed in xindy 2.4-1.3
has caused the Debian Bug report #739143,
regarding xindy: FTBFS: I can't find file `ecrm1000'.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
739143: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739143
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Source: xindy
Version: 2.4-1.2
Severity: serious

From my pbuilder build log:

...
pdflatex -interaction batchmode ./alphabets-doc.tex
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian)
 restricted \write18 enabled.
entering extended mode

kpathsea: Running mktextfm ecrm1000
/usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation 
 for ecrm1000.
/usr/share/texlive/texmf-dist/web2c/mktexnam: Need to update ?
mktextfm: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1; nonstopmode; 
input ecrm1000
This is METAFONT, Version 2.718281 (TeX Live 2013/Debian)


kpathsea: Running mktexmf ecrm1000
! I can't find file `ecrm1000'.
* ...ljfour; mag:=1; nonstopmode; input ecrm1000
  
Please type another input file name
! Emergency stop.
* ...ljfour; mag:=1; nonstopmode; input ecrm1000
  
Transcript written on mfput.log.
grep: ecrm1000.log: No such file or directory
mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; nonstopmode; input 
ecrm1000' failed to make ecrm1000.tfm.
kpathsea: Appending font creation commands to missfont.log.

kpathsea: Running mktextfm ecrm2488
/usr/share/texlive/texmf-dist/web2c/mktexnam: Could not map source abbreviation 
 for ecrm2488.
...
Transcript written on larm0900.log.
mktextfm: `mf-nowin -progname=mf \mode:=ljfour; mag:=1; nonstopmode; input 
larm0900' failed.
make[3]: *** [alphabets-doc.pdf] Error 1
rm slovak/large-utf8.pl esperanto/utf8.pl french/utf8.pl hungarian/utf8.pl 
german/din5007-utf8.pl english/utf8.pl ukrainian/utf8.pl croatian/utf8.pl 
russian/translit-iso-utf8.pl hausa/utf8.pl latin/utf8.pl vietnamese/utf8.pl 
lithuanian/utf8.pl greek/utf8.pl kurdish/turkish-i-utf8.pl 
spanish/modern-utf8.pl general/utf8.pl finnish/utf8.pl albanian/utf8.pl 
swedish/utf8.pl lower-sorbian/utf8.pl bulgarian/utf8.pl german/duden-utf8.pl 
icelandic/utf8.pl latvian/utf8.pl italian/utf8.pl dutch/ij-as-ij-utf8.pl 
slovenian/utf8.pl russian/utf8.pl czech/utf8.pl greek/polytonic-utf8.pl 
danish/utf8.pl norwegian/utf8.pl hebrew/utf8.pl portuguese/utf8.pl 
german/braille-utf8.pl serbian/utf8.pl macedonian/utf8.pl estonian/utf8.pl 
gypsy/northrussian-utf8.pl upper-sorbian/utf8.pl kurdish/bedirxan-utf8.pl 
polish/utf8.pl slovak/small-utf8.pl greek/translit-utf8.pl 
mongolian/cyrillic-utf8.pl klingon/utf8.pl georgian/utf8.pl 
spanish/traditional-utf8.pl dutch/ij-as-y-utf8.pl belarusian/utf8.pl 
turkish/utf8.pl
make[3]: Leaving directory `/tmp/buildd/xindy-2.4/make-rules/alphabets'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/tmp/buildd/xindy-2.4/make-rules/alphabets'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/buildd/xindy-2.4/make-rules'
make: *** [build-indep-stamp] Error 1
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
-- 
Daniel Schepler
---End Message---
---BeginMessage---
Source: xindy
Source-Version: 2.4-1.3

We believe that the bug you reported is fixed in the latest version of
xindy, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 739...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Moog andreas.m...@warperbbs.de (supplier of updated xindy package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 16 Feb 2014 21:26:40 +0100
Source: xindy
Binary: xindy xindy-rules
Architecture: source all amd64
Version: 2.4-1.3
Distribution: unstable
Urgency: medium
Maintainer: Jörg Sommer jo...@alea.gnuu.de
Changed-By: Andreas Moog andreas.m...@warperbbs.de
Description: 
 xindy  - index generator for structured documents like LaTeX or SGML
 xindy-rules - rule files 

Bug#739657: gnuhealth-server: fails to install: gnuhealth-server.postinst: sudo: not found

2014-02-21 Thread Emilien Klein
Le 21 févr. 2014 21:57, Emilien Klein emilien+deb...@klein.st a écrit :

 This is already weird:

 populating database via scriptfile...  error encountered populating
database: /usr/share/dbconfig-common/scripts/gnuhealth-server/install/pgsql
exited with non-zero status

 Might be to a call to sudo as well in that script.
 The goal is indeed to execute the command under that other user. I know I
tried with su, but for some reason that didn't work out.
 I don't have my computer this weekend, I'll have a look on Monday.

 +Emilien


Bug#713612: vdpau-video: FTBFS: utils_glx.h:163:5: error: unknown type name 'PFNGLMULTITEXCOORD2FPROC'

2014-02-21 Thread Ross Gammon
Hi,

I have fixed the watch file so that uscan finds the latest version of
vdpau-video (see attached).

According to the changelog in 0.7.4, both the vaBufferInfo, and the
libva issue MAY be solved in this new version.

Unfortunately, when I imported the tarball and refreshed the patches,
the autoreconf patch does not reapply cleanly, and it was a bit beyond
my abilities to sort it out. I could not get vdpau-video to build
without the patch.

Regards,

Ross
version=3
http://cgit.freedesktop.org/vaapi/vdpau-driver/ 
snapshot/vdpau-driver-(.+)\.tar\.gz


Bug#735202: speakup crashes debian

2014-02-21 Thread Jude DaShiell
Not entirely sure, what's my best bet for installing a readline package 
that is likely to work?

On Sun, 2 Feb 2014, Paul Gevers wrote:

 On 26-01-14 19:28, Geoff Shang wrote:
  It seems to happen when working in more primitive environments with
  no readline.
 
 Triggered by the mail of Jude, do you confirm that installing readline
 prevents this bug from happening? Than indeed adding that as a
 dependency would solve your issue.
 
 Paul
 
 
 

jude jdash...@shellworld.net


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Bug#735202: speakup crashes debian

2014-02-21 Thread Jude DaShiell
If that missing dependency is undocumented and also not an mandatory 
automatic install with another package that needs a fix or two.  If 
anyone can test this on a machine with an ensonicq (I think 1370) sound 
card if this bug can't be reproduced, pulseaudio is at least 
participating and may be doing more than that.  Intel sound cards and 
pulseaudio don't get along well and until I learned that, I couldn't 
figure out how pulseaudio routinely failed yet speakup came up working.  
The amd64k machine I have unfortunately has one of the intel junk cards.

On Sun, 2 Feb 2014, Paul Gevers wrote:

 On 02-02-14 11:29, Geoff Shang wrote:
  IMHO, tryign to work around the bug isn't the right approach.  A bug
  that will crash the entire system hard needs to be treated as a bug that
  needs to be fixed.
 
 I agree with you. But a missing dependency can also very well be a bug,
 so I wasn't trying to work around the bug. But indeed, bringing a
 system completely to a halt does hardly look like a missing dependency
 issue.
 
 Paul
 
 
 

jude jdash...@shellworld.net


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Bug#739631: marked as done (python-pysam: FTBFS: ImportError: No module named pysam)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Sat, 22 Feb 2014 00:04:24 +
with message-id e1wh04u-0001kg...@franck.debian.org
and subject line Bug#739631: fixed in python-pysam 0.7.5-2
has caused the Debian Bug report #739631,
regarding python-pysam: FTBFS: ImportError: No module named pysam
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
Source: python-pysam
Version: 0.7.5-1
Severity: serious
Justification: fails to build from source

Builds of python-pysam in minimal environments (as on the
autobuilders) have been failing:

  dh_auto_test
  chmod a+x tests/pysam_test_offline.py
  set -e -x;\
  for pyv in `pyversions -dv` ; do \
  cd tests  env PYTHONPATH=/«PKGBUILDDIR»/build/lib.«ARCH»-${pyv} 
./pysam_test_offline.py ; \
done
  + pyversions -dv
  + cd tests
  + env PYTHONPATH=/«PKGBUILDDIR»/build/lib.«ARCH»-2.7 ./pysam_test_offline.py
  Traceback (most recent call last):
File ./pysam_test_offline.py, line 8, in module
  import pysam
  ImportError: No module named pysam
  make[1]: *** [override_dh_auto_test] Error 1
  make[1]: Leaving directory `/«PKGBUILDDIR»'
  make: *** [build-arch] Error 2

Could you please take a look, and ensure that PYTHONPATH covers
pysam's Python files, not just the extensions that support them?

Thanks!
---End Message---
---BeginMessage---
Source: python-pysam
Source-Version: 0.7.5-2

We believe that the bug you reported is fixed in the latest version of
python-pysam, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 739...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille ti...@debian.org (supplier of updated python-pysam package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 20 Feb 2014 19:01:46 +0100
Source: python-pysam
Binary: python-pysam python-pysam-tests
Architecture: source amd64 all
Version: 0.7.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
debian-med-packag...@lists.alioth.debian.org
Changed-By: Andreas Tille ti...@debian.org
Description: 
 python-pysam - interface for the SAM/BAM sequence alignment and mapping format
 python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping 
format (
Closes: 739631
Changes: 
 python-pysam (0.7.5-2) unstable; urgency=medium
 .
   * debian/rules: Set PYTHONPATH correctly using dh_python
 (thanks to Piotr Ożarowski pi...@debian.org for the patch)
 Closes: #739631
Checksums-Sha1: 
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python-pysam_0.7.5-2.debian.tar.xz
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python-pysam-tests_0.7.5-2_all.deb
Files: 
 322882e4f74dcbaec3acd45852512a55 2146 python optional python-pysam_0.7.5-2.dsc
 5f1baa077909900ffbc553a522422694 18904 python optional 
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 07223ab631e65ee1196eb355a66d2e02 588620 python optional 
python-pysam_0.7.5-2_amd64.deb
 eb21ea095d6903936df7eac199ddd8d1 397482 python extra 
python-pysam-tests_0.7.5-2_all.deb

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Bug#739735: hime: FTBFS on kfreebsd-*

2014-02-21 Thread 陳昌倬
Source: hime
Version: 0.9.10-1
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Hi,

The hime FTBFS on kfreebsd-*. I will try to fix it.

[1] https://buildd.debian.org/status/package.php?p=hime



-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (800, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.12-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

-- 
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Key fingerprint = EC9F 905D 866D BE46 A896  C827 BE0C 9242 03F4 552D


signature.asc
Description: Digital signature


Bug#739735: hime: FTBFS on kfreebsd-*

2014-02-21 Thread 陳昌倬
owner 739735 !
thanks
-- 
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Key fingerprint = EC9F 905D 866D BE46 A896  C827 BE0C 9242 03F4 552D


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Description: Digital signature


Processed: hime: FTBFS on kfreebsd-*

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 owner 739735 !
Bug #739735 [src:hime] hime: FTBFS on kfreebsd-*
Owner recorded as ChangZhuo Chen (陳昌倬) czc...@gmail.com.
 thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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Bug#730821: libsunpinyin3: fails to convert ue and iong syllables and crashes

2014-02-21 Thread Lingzhu Xiang
I bisected the regression and opened a bug upstream
https://github.com/sunpinyin/sunpinyin/issues/42.

Lingzhu Xiang


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Processed: user debian...@lists.debian.org, usertagging 739662, affects 739662

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 user debian...@lists.debian.org
Setting user to debian...@lists.debian.org (was a...@debian.org).
 usertags 739662 piuparts
There were no usertags set.
Usertags are now: piuparts.
 affects 739662 + syncevolution-libs
Bug #739662 [syncevolution-libs-gnome] syncevolution-libs-gnome: trying to 
overwrite '...syncecal.so', which is also in package syncevolution-libs 
1.3.2-1+b1
Added indication that 739662 affects syncevolution-libs
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#730821: libsunpinyin3: fails to convert ue and iong syllables and crashes

2014-02-21 Thread GUO Yixuan
Control: forwarded -1 https://github.com/sunpinyin/sunpinyin/issues/42

On Fri, Feb 21, 2014 at 10:46:50PM -0500, Lingzhu Xiang wrote:
 I bisected the regression and opened a bug upstream
 https://github.com/sunpinyin/sunpinyin/issues/42.
 
 Lingzhu Xiang
 

Thank you!

GUO Yixuan


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Processed: Re: libsunpinyin3: fails to convert ue and iong syllables and crashes

2014-02-21 Thread Debian Bug Tracking System
Processing control commands:

 forwarded -1 https://github.com/sunpinyin/sunpinyin/issues/42
Bug #730821 [libsunpinyin3] libsunpinyin3: fails to convert ue and iong 
syllables and crashes
Set Bug forwarded-to-address to 
'https://github.com/sunpinyin/sunpinyin/issues/42'.

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Bug#730821: libsunpinyin3: fails to convert ue and iong syllables and crashes

2014-02-21 Thread Lingzhu Xiang
reassign -1 sunpinyin-data
retitle -1 sunpinyin-data: 0.1.22+20120112-1 breaks libsunpinyin3
thanks

Sunpinyin upstream says sunpinyin-data (20130220) breaks current
libsunpinyin. 
https://github.com/sunpinyin/sunpinyin/issues/42#issuecomment-35795012

How it breaks is shown above.

As I tested rebuilding sunpinyin-data with updated dict.utf8 and
lm_sc.t3g.arpa from open-gram upstream would resolve this.

Lingzhu Xiang


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Processed: Re: libsunpinyin3: fails to convert ue and iong syllables and crashes

2014-02-21 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 reassign 730821 sunpinyin-data
Bug #730821 [libsunpinyin3] libsunpinyin3: fails to convert ue and iong 
syllables and crashes
Bug reassigned from package 'libsunpinyin3' to 'sunpinyin-data'.
No longer marked as found in versions sunpinyin/2.0.3+git20130507-1.
Ignoring request to alter fixed versions of bug #730821 to the same values 
previously set
 retitle 730821 sunpinyin-data: 0.1.22+20120112-1 breaks libsunpinyin3
Bug #730821 [sunpinyin-data] libsunpinyin3: fails to convert ue and iong 
syllables and crashes
Changed Bug title to 'sunpinyin-data: 0.1.22+20120112-1 breaks libsunpinyin3' 
from 'libsunpinyin3: fails to convert ue and iong syllables and crashes'
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#738716: marked as forwarded (automake: Generates syntax error in configure script)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Sat, 22 Feb 2014 02:40:41 -0500
with message-id 20140222074041.GA19876@gambit
has caused the   report #738716,
regarding automake: Generates syntax error in configure script
to be marked as having been forwarded to the upstream software
author(s) bug-autom...@gnu.org

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
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immediately.)


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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
---BeginMessage---
* Hilko Bengen (ben...@debian.org) wrote:
 Source: automake-1.14
 Version: 1:1.14.1-2
 Severity: critical
 Tags: patch
 
 While trying to build a new version of nbdkit, I fonud that a freshly
 generated configure script contains a syntax error:
 
 ,
 | $ curl -O http://libguestfs.org/download/nbdkit/nbdkit-1.1.4.tar.gz
 | [...]
 | $ tar xzf nbdkit-1.1.4.tar.gz 
 | $ cd nbdkit-1.1.4/
 | $ autoreconf
 | $ ./configure
 | [...]
 | checking for style of include used by make... GNU
 | checking whether make supports nested variables... yes
 | checking dependency style of gcc... gcc3
 | ./configure: line 4820: syntax error near unexpected token `case'
 | ./configure: line 4820: `fi case `pwd` in'
 `
 
 To me, this looks like a missing newline at the end of AM_INIT_AUTOMAKE
 in /usr/share/aclocal-1.14/init.m4. At least the attached patch fixes
 the problem for me.

It looks like the problem is the dnl on your AM_INIT_AUTOMAKE line: 

AM_INIT_AUTOMAKE(foreign) dnl NB: Do not [quote] this parameter.

That's suppressing the natural new line that would be there. But I
think the patch is legitimate so forwarding it along.

 --- /usr/share/aclocal-1.14/init.m4.orig2014-02-12 09:45:22.883382346 
 +0100
 +++ /usr/share/aclocal-1.14/init.m4 2014-02-12 09:45:40.758921507 +0100
 @@ -164,7 +164,8 @@
  END
  AC_MSG_ERROR([Your 'rm' program is bad, sorry.])
fi
 -fi])
 +fi
 +])
  
  dnl Hook into '_AC_COMPILER_EXEEXT' early to learn its expansion.  Do not
  dnl add the conditional right here, as _AC_COMPILER_EXEEXT may be further


-- 
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ICQ: #61138586, Jabber: ho...@jabber.com



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Description: Digital signature
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Bug#739685: marked as done (flashplugin-nonfree: updater fails to download fp.11.2.202.341.sha512.i386.pgp.asc)

2014-02-21 Thread Debian Bug Tracking System
Your message dated Sat, 22 Feb 2014 07:47:42 +
with message-id 20140222074742.gc17...@master.debian.org
and subject line flashplugin-nonfree: updater fails to download 
fp.11.2.202.341.sha512.i386.pgp.asc
has caused the Debian Bug report #739685,
regarding flashplugin-nonfree: updater fails to download 
fp.11.2.202.341.sha512.i386.pgp.asc
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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---BeginMessage---
Package: flashplugin-nonfree
Version: 1:3.4
Severity: critical
Tags: security
Justification: root security hole

Dear Maintainer,

seems checksum file is missing again.

*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?

# update-flashplugin-nonfree --status
Flash Player version installed on this system  : 11.2.202.336
Flash Player version available on upstream site: 11.2.202.341
flash-mozilla.so - auto mode
  link currently points to /usr/lib/flashplugin-nonfree/libflashplayer.so
/usr/lib/flashplugin-nonfree/libflashplayer.so - priority 50
Current 'best' version is '/usr/lib/flashplugin-nonfree/libflashplayer.so'.
root@lintower:~# update-flashplugin-nonfree -iv
options :  -i -v --
temporary directory: /tmp/flashplugin-nonfree.zzzwdR94s3
importing public key ...
selected action = --install
installed version = 11.2.202.336
upstream version = 11.2.202.341
wgetoptions= -nd -P .   -v --progress=dot:default
downloading http://people.debian.org/~bartm/flashplugin-
nonfree/fp.11.2.202.341.sha512.i386.pgp.asc ...
--2014-02-21 11:39:01--  http://people.debian.org/~bartm/flashplugin-
nonfree/fp.11.2.202.341.sha512.i386.pgp.asc
Auflösen des Hostnamen »people.debian.org (people.debian.org)«...
206.12.19.5, 2607:f8f0:610:4000:214:38ff:feee:b65a
Verbindungsaufbau zu people.debian.org (people.debian.org)|206.12.19.5|:80...
verbunden.
HTTP-Anforderung gesendet, warte auf Antwort... 404 Not Found
2014-02-21 11:39:01 FEHLER 404: Not Found.



   * What outcome did you expect instead?

Installation of new flashplungin-nonfree.




-- Package-specific info:
Debian version: jessie/sid
Architecture: i386
Package version: 1:3.4
Adobe Flash Player version: LNX 11,2,202,336
MD5 checksums:
208968bb1109e8627fa3c08b43814bee  
/var/cache/flashplugin-nonfree/get-upstream-version.pl
bd7f77dfd0a03bbbd5d124febb8c83d5  
/var/cache/flashplugin-nonfree/install_flash_player_11_linux.i386.tar.gz
bb65bbfca69eb7da3dcdbf4693ea352c  
/usr/lib/flashplugin-nonfree/libflashplayer.so
Alternatives:
flash-mozilla.so - auto mode
  link currently points to 
/usr/lib/flashplugin-nonfree/libflashplayer.so
/usr/lib/flashplugin-nonfree/libflashplayer.so - priority 50
Current 'best' version is 
'/usr/lib/flashplugin-nonfree/libflashplayer.so'.
lrwxrwxrwx 1 root root 34 Dec  9 15:46 
/usr/lib/mozilla/plugins/flash-mozilla.so - /etc/alternatives/flash-mozilla.so
/usr/lib/mozilla/plugins/flash-mozilla.so: symbolic link to 
`/etc/alternatives/flash-mozilla.so' 

-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (900, 'unstable'), (500, 'testing'), (500, 'stable'), (1, 
'experimental')
Architecture: i386 (i686)

Kernel: Linux 3.13-0.towo.3-siduction-686 (SMP w/1 CPU core; PREEMPT)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages flashplugin-nonfree depends on:
ii  binutils   2.24-3
ii  debconf [debconf-2.0]  1.5.52
ii  gnupg  1.4.16-1
ii  libatk1.0-02.10.0-2
ii  libcairo2  1.12.16-2
ii  libcurl3-gnutls7.35.0-1
ii  libfontconfig1 2.11.0-2
ii  libfreetype6   2.5.2-1
ii  libgcc11:4.8.2-15
ii  libglib2.0-0   2.37.5+really2.36.4-0r0
ii  libgtk2.0-02.24.22-1
ii  libnspr4   2:4.10.3-1
ii  libnss32:3.15.4-2+fix1
ii  libpango1.0-0  1.36.0-1+b1
ii  libstdc++6 4.8.2-15
ii  libx11-6   2:1.6.2-1
ii  libxext6   2:1.3.2-1
ii  libxt6 1:1.1.4-1
ii  wget   1.15-1

flashplugin-nonfree recommends no packages.

Versions of packages flashplugin-nonfree suggests:
ii  flashplugin-nonfree-extrasound  0.0.svn2431-3
ii  fonts-dejavu2.34-1
ii  hal 0.5.14-8
ii  iceweasel   24.3.0esr-1
pn  konqueror-nsplugins none
ii  ttf-mscorefonts-installer