Bug#936758: marked as done (jack-mixer: Python2 removal in sid/bullseye)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:39:13 +
with message-id 
and subject line Bug#945354: Removed package(s) from unstable
has caused the Debian Bug report #936758,
regarding jack-mixer: Python2 removal in sid/bullseye
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
936758: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=936758
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:jack-mixer
Version: 10-1
Severity: normal
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: py2removal

Python2 becomes end-of-live upstream, and Debian aims to remove
Python2 from the distribution, as discussed in
https://lists.debian.org/debian-python/2019/07/msg00080.html

Your package either build-depends, depends on Python2, or uses Python2
in the autopkg tests.  Please stop using Python2, and fix this issue
by one of the following actions.

- Convert your Package to Python3. This is the preferred option.  In
  case you are providing a Python module foo, please consider dropping
  the python-foo package, and only build a python3-foo package.  Please
  don't drop Python2 modules, which still have reverse dependencies,
  just document them.
  
  This is the preferred option.

- If the package is dead upstream, cannot be converted or maintained
  in Debian, it should be removed from the distribution.  If the
  package still has reverse dependencies, raise the severity to
  "serious" and document the reverse dependencies with the BTS affects
  command.  If the package has no reverse dependencies, confirm that
  the package can be removed, reassign this issue to ftp.debian.org,
  make sure that the bug priority is set to normal and retitle the
  issue to "RM: PKG -- removal triggered by the Python2 removal".

- If the package has still many users (popcon >= 300), or is needed to
  build another package which cannot be removed, document that by
  adding the "py2keep" user tag (not replacing the py2remove tag),
  using the debian-pyt...@lists.debian.org user.  Also any
  dependencies on an unversioned python package (python, python-dev)
  must not be used, same with the python shebang.  These have to be
  replaced by python2/python2.7 dependencies and shebang.

  This is the least preferred option.

If the conversion or removal needs action on another package first,
please document the blocking by using the BTS affects command, like

  affects  + src:jack-mixer

If there is no py2removal bug for that reverse-dependency, please file
a bug on this package (similar to this bug report).

If there are questions, please refer to the wiki page for the removal:
https://wiki.debian.org/Python/2Removal, or ask for help on IRC
#debian-python, or the debian-pyt...@lists.debian.org mailing list.
--- End Message ---
--- Begin Message ---
Version: 10-1+rm

Dear submitter,

as the package jack-mixer has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945354

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#885309: marked as done (jack-mixer: Depends on unmaintained pygtk)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:39:13 +
with message-id 
and subject line Bug#945354: Removed package(s) from unstable
has caused the Debian Bug report #885309,
regarding jack-mixer: Depends on unmaintained pygtk
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
885309: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=885309
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: jack-mixer
Version: 10-1
Severity: serious
User: pkg-gnome-maintain...@lists.alioth.debian.org
Usertags: oldlibs pygtk
Tags: sid buster

pygtk is unmaintained upstream. It has not had a release since GNOME 3
was released in 2011.

The way forward is to port your app to use GObject Introspection
bindings.

For more information on GObject Introspection see [1] and [2].

Please try to do this before the Buster release as we're going to
try to remove pygtk this cycle.

If you have any question don't hesitate to ask.

[1] https://wiki.gnome.org/Projects/GObjectIntrospection
[2] https://wiki.gnome.org/Projects/PyGObject

On behalf of the Debian GNOME team,
Jeremy Bicha
--- End Message ---
--- Begin Message ---
Version: 10-1+rm

Dear submitter,

as the package jack-mixer has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945354

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#937160: marked as done (notify-python: Python2 removal in sid/bullseye)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:40:13 +
with message-id 
and subject line Bug#945383: Removed package(s) from unstable
has caused the Debian Bug report #937160,
regarding notify-python: Python2 removal in sid/bullseye
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
937160: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=937160
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:notify-python
Version: 0.1.1-4
Severity: normal
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: py2removal

Python2 becomes end-of-live upstream, and Debian aims to remove
Python2 from the distribution, as discussed in
https://lists.debian.org/debian-python/2019/07/msg00080.html

Your package either build-depends, depends on Python2, or uses Python2
in the autopkg tests.  Please stop using Python2, and fix this issue
by one of the following actions.

- Convert your Package to Python3. This is the preferred option.  In
  case you are providing a Python module foo, please consider dropping
  the python-foo package, and only build a python3-foo package.  Please
  don't drop Python2 modules, which still have reverse dependencies,
  just document them.
  
  This is the preferred option.

- If the package is dead upstream, cannot be converted or maintained
  in Debian, it should be removed from the distribution.  If the
  package still has reverse dependencies, raise the severity to
  "serious" and document the reverse dependencies with the BTS affects
  command.  If the package has no reverse dependencies, confirm that
  the package can be removed, reassign this issue to ftp.debian.org,
  make sure that the bug priority is set to normal and retitle the
  issue to "RM: PKG -- removal triggered by the Python2 removal".

- If the package has still many users (popcon >= 300), or is needed to
  build another package which cannot be removed, document that by
  adding the "py2keep" user tag (not replacing the py2remove tag),
  using the debian-pyt...@lists.debian.org user.  Also any
  dependencies on an unversioned python package (python, python-dev)
  must not be used, same with the python shebang.  These have to be
  replaced by python2/python2.7 dependencies and shebang.

  This is the least preferred option.

If the conversion or removal needs action on another package first,
please document the blocking by using the BTS affects command, like

  affects  + src:notify-python

If there is no py2removal bug for that reverse-dependency, please file
a bug on this package (similar to this bug report).

If there are questions, please refer to the wiki page for the removal:
https://wiki.debian.org/Python/2Removal, or ask for help on IRC
#debian-python, or the debian-pyt...@lists.debian.org mailing list.
--- End Message ---
--- Begin Message ---
Version: 0.1.1-4+rm

Dear submitter,

as the package notify-python has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945383

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#885380: marked as done (notify-python: Depends on unmaintained pygtk)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:40:13 +
with message-id 
and subject line Bug#945383: Removed package(s) from unstable
has caused the Debian Bug report #885380,
regarding notify-python: Depends on unmaintained pygtk
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
885380: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=885380
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: notify-python
Version: 0.1.1-4
Severity: important
User: pkg-gnome-maintain...@lists.alioth.debian.org
Usertags: oldlibs pygtk
Tags: sid buster

pygtk is unmaintained upstream. It has not had a release since GNOME 3
was released in 2011.

The way forward is to port your app to use GObject Introspection
bindings (and gtk3).

For more information on GObject Introspection see [1] and [2].

Please try to do this before the Buster release as we're going to
try to remove pygtk this cycle.

If you have any question don't hesitate to ask.

[1] https://wiki.gnome.org/Projects/GObjectIntrospection
[2] https://wiki.gnome.org/Projects/PyGObject

On behalf of the Debian GNOME team,
Jeremy Bicha
--- End Message ---
--- Begin Message ---
Version: 0.1.1-4+rm

Dear submitter,

as the package notify-python has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945383

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#943930: marked as done (Should cvc3 be removed?)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:38:09 +
with message-id 
and subject line Bug#945319: Removed package(s) from unstable
has caused the Debian Bug report #943930,
regarding Should cvc3 be removed?
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943930: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943930
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: cvc3
Severity: serious

Should cvc3 be removed? It's unmaintained (last maintainer upload is from 2014 
and the maintainer is also
one of the authors) and FTBFSes since 1.5 years.

Cheers,
Moritz
--- End Message ---
--- Begin Message ---
Version: 2.4.1-5.2+rm

Dear submitter,

as the package cvc3 has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945319

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#945392: hyperkitty: autopkgtest failures

2019-11-23 Thread Bas Couwenberg
Source: hyperkitty
Version: 1.3.0-1
Severity: serious
Justification: makes the package in question unusable or mostly so

Dear Maintainer,

The autopkgtest for your package are failing, which prevent the testing 
migration of networkx.

The logging shows many exceptions like this:

 AttributeError: 'DiGraph' object has no attribute 'node'

See:

 
https://ci.debian.net/data/autopkgtest/testing/amd64/h/hyperkitty/3494471/log.gz

Kind Regards,

Bas



Bug#902386: marked as done (cvc3: FTBFS in API tests with Java 10 due to -d64 option removal)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:38:09 +
with message-id 
and subject line Bug#945319: Removed package(s) from unstable
has caused the Debian Bug report #902386,
regarding cvc3: FTBFS in API tests with Java 10 due to -d64 option removal
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
902386: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=902386
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:cvc3
Version: 2.4.1-5.1
Severity: serious

Hi, after applying the patch sent to bug #873975 building the package
advances into the tests, but then fails like this:

*
Java API test
*
/usr/bin/make -C java test 2>&1 \
  | tee -a regressions.log; [ ${PIPESTATUS[0]} -eq 0 ]
make[3]: Entering directory '/home/rt/debian/packages/qa/cvc3-2.4.1/java'
if [ ! -d /home/rt/debian/packages/qa/cvc3-2.4.1/java/lib ]; then mkdir -p 
/home/rt/debian/packages/qa/cvc3-2.4.1/java/lib; fi
if [ ! -d obj ]; then mkdir -p obj; fi
/usr/lib/jvm/default-java/bin/java -d64  
-Djava.library.path=../java/lib/x86_64-linux-gnu -ea -jar 
../java/lib/cvc3test.jar
Unrecognized option: -d64
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
make[3]: *** [Makefile:273: test] Error 1
make[3]: Leaving directory '/home/rt/debian/packages/qa/cvc3-2.4.1/java'
make[2]: *** [Makefile:220: regress] Error 1
make[2]: Leaving directory '/home/rt/debian/packages/qa/cvc3-2.4.1'
make[1]: *** [Makefile:246: regress0] Error 2
make[1]: Leaving directory '/home/rt/debian/packages/qa/cvc3-2.4.1'
make: *** [/usr/share/cdbs/1/class/makefile.mk:113: 
debian/stamp-makefile-check] Error 2


-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.16.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8) (ignored: LC_ALL 
set to en_US.utf8), LANGUAGE=en_US:en (charmap=UTF-8) (ignored: LC_ALL set to 
en_US.utf8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Version: 2.4.1-5.2+rm

Dear submitter,

as the package cvc3 has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945319

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#945393: skimage: autopkgtest failures

2019-11-23 Thread Bas Couwenberg
Source: skimage
Version: 0.14.2-3
Severity: serious
Justification: makes the package in question unusable or mostly so

Dear Maintainer,

The autopkgtest for your package are failing, which prevent the testing 
migration of networkx.

The logging shows many exceptions like this:

 AttributeError: 'RAG' object has no attribute 'node'

See:

 https://ci.debian.net/data/autopkgtest/testing/amd64/s/skimage/3494472/log.gz

Kind Regards,

Bas



Bug#873975: marked as done (FTBFS with Java 9 due to -source/-target only)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 07:38:09 +
with message-id 
and subject line Bug#945319: Removed package(s) from unstable
has caused the Debian Bug report #873975,
regarding FTBFS with Java 9 due to -source/-target only
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
873975: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=873975
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: cvc3
Version: 2.4.1
Severity: normal
User: debian-j...@lists.debian.org
Usertags: default-java9

This package fails to build with default-jdk pointing to openjdk-9-jdk.
The wiki has some common problems and their solutions:
https://wiki.debian.org/Java/Java9Pitfalls

An automated tool has decided that this package will build fine if the
-source and -target options are changed to 1.6; no additional changes
are required. This was done by building with a compiler that changed
the settings automatically, then the real compiler, and diffing the
results. This modified compiler will never be part of Debian.

ant and Maven are supposed to do this for you, and I've tried to check
that this package is not using ant or Maven correctly, but I might have
messed up.

Build log sample:

make[2]: Entering directory '/build/cvc3-2.4.1/java'
if [ ! -d obj ]; then mkdir -p obj; fi
/usr/lib/jvm/default-java/bin/javac  -Xlint -g -source 1.4 -sourcepath src \
-d obj src/cvc3/JniUtils.java
warning: [options] bootstrap class path not set in conjunction with -source 1.4
error: Source option 1.4 is no longer supported. Use 1.6 or later.
make[2]: *** [JniUtils.class] Error 2
Makefile:166: recipe for target 'JniUtils.class' failed
make[2]: Leaving directory '/build/cvc3-2.4.1/java'

Cheers,
Chris.
--- End Message ---
--- Begin Message ---
Version: 2.4.1-5.2+rm

Dear submitter,

as the package cvc3 has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/945319

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

Please note that the changes have been done on the master archive and
will not propagate to any mirrors until the next dinstall run at the
earliest.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmas...@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)--- End Message ---


Bug#945390: androguard: autopkgtest failures

2019-11-23 Thread Bas Couwenberg
Source: androguard
Version: 3.3.5-1
Severity: serious
Justification: makes the package in question unusable or mostly so

Dear Maintainer,

The autopkgtest for your package are failing, which prevent the testing 
migration of networkx.

The logging shows many exceptions like this:

 AttributeError: 'DiGraph' object has no attribute 'node'

See:

 
https://ci.debian.net/data/autopkgtest/testing/amd64/a/androguard/3495118/log.gz

Kind Regards,

Bas



Bug#945389: skimage: FTBFS with python3.8 (test failures)

2019-11-23 Thread Bas Couwenberg
Source: skimage
Version: 0.14.2-3
Severity: serious
Justification: makes the package in question unusable or mostly so

Dear Maintainer,

Your package FTBFS as part of the python3.8 transition, see:

 
https://buildd.debian.org/status/fetch.php?pkg=skimage=amd64=0.14.2-3%2Bb1=1574494998=0
 https://buildd.debian.org/status/package.php?p=skimage

Kind Regards,

Bas



Bug#945386: open-font-design-toolkit: Python2 removal in sid/bullseye

2019-11-23 Thread Steve Langasek
Source: open-font-design-toolkit
Version: 1.7
Severity: serious
Tags: sid bullseye
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu focal

Dear maintainers,

The open-font-design-toolkit package is now uninstallable in unstable
because it depends on python-fontforge, a python2 module which has been
removed from the latest version of fontforge and is now only available in
unstable as an uninstallable cruft package:

$ sudo apt install open-font-design-toolkit 
Reading package lists... Done
Building dependency tree   
Reading state information... Done
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
 open-font-design-toolkit : Depends: python-fontforge but it is not going to be 
installed
Depends: xgridfit but it is not going to be 
installed
E: Unable to correct problems, you have held broken packages.
$

I don't know why this package was overlooked in the general mass bug filing
for python2 removals, but your package is currently unreleasable due to this
bug.

-- 
Steve Langasek   Give me a lever long enough and a Free OS
Debian Developer   to set it on, and I can move the world.
Ubuntu Developer   https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org


signature.asc
Description: PGP signature


Bug#945384: visp: autopkgtest regression

2019-11-23 Thread Steve Langasek
Source: visp
Version: 3.2.0-1
Severity: serious
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu focal

Dear maintainers,

The autopkgtests for visp 3.2.0-1 have regressed vs prior versions of this
package, which means it will not migrate to testing.

The test failure happens to be different in Debian vs. Ubuntu.  In Debian
it appears to be failing due to uninstallability.  This uninstallability
doesn't affect Ubuntu (libvisp-detection-dev is installable in Ubuntu), but
once past this failure the test fails due to what looks like a missing
dependency of the -dev package:

autopkgtest [00:17:15]: test build: [---
g++: error: /usr/lib/x86_64-linux-gnu/libOpenGL.so: No such file or directory
g++: error: /usr/lib/x86_64-linux-gnu/libGLX.so: No such file or directory
g++: error: /usr/lib/x86_64-linux-gnu/libGLU.so: No such file or directory
g++: error: /usr/lib/x86_64-linux-gnu/libCoin.so: No such file or directory
g++: error: /usr/lib/x86_64-linux-gnu/libXi.so: No such file or directory
autopkgtest [00:17:16]: test build: ---]
[...]

  (http://autopkgtest.ubuntu.com/packages/v/visp/focal/amd64)

Looking at the autopkgtest in question, it appears that pkg-config for visp
is emitting libraries in its Libs: field that are provided by packages which
it does not depend on.  So this points to an actual bug in visp that needs
fixing. 

-- 
Steve Langasek   Give me a lever long enough and a Free OS
Debian Developer   to set it on, and I can move the world.
Ubuntu Developer   https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org


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Description: PGP signature


Bug#943609: marked as done (breezy ftbfs with python 3.8)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 03:19:29 +
with message-id 
and subject line Bug#943609: fixed in breezy 3.0.2-1
has caused the Debian Bug report #943609,
regarding breezy ftbfs with python 3.8
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943609: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943609
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: src:breezy
Version: 3.0.1-6
Severity: important
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.8

breezy fails when trying to build for python 3.8:


breezy/_simple_set_pyx.c:318:11: error: too many arguments to function 
‘PyCode_New’
  318 |   PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, 
name, fline, lnos)

  |   ^~
breezy/_simple_set_pyx.c:8604:15: note: in expansion of macro ‘__Pyx_PyCode_New’
 8604 | py_code = __Pyx_PyCode_New(
  |   ^~~~
In file included from /usr/include/python3.8/compile.h:5,
 from /usr/include/python3.8/Python.h:138,
 from breezy/_simple_set_pyx.c:4:
/usr/include/python3.8/code.h:122:28: note: declared here
  122 | PyAPI_FUNC(PyCodeObject *) PyCode_New(
  |^~

  Cannot build extension "breezy._simple_set_pyx".
  Use "build_ext --allow-python-fallback" to use slower python implementations 
instead.


error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
--- End Message ---
--- Begin Message ---
Source: breezy
Source-Version: 3.0.2-1

We believe that the bug you reported is fixed in the latest version of
breezy, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 943...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Jelmer Vernooij  (supplier of updated breezy package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Sun, 24 Nov 2019 02:09:25 +
Source: breezy
Architecture: source
Version: 3.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Breezy Maintainers 
Changed-By: Jelmer Vernooij 
Closes: 941532 943609 943908 944379
Changes:
 breezy (3.0.2-1) unstable; urgency=medium
 .
   * Fix bash completion script. Closes: #941532
   * Set Rules-Requires-Root.
   * Update standards version to 4.4.1, no changes needed.
   * Re-export upstream signing key without extra signatures.
   * New upstream release.
+ Adds support for Python 3.8. Closes: #943609
+ Fixes handling of missing .config/breezy directory.
  Closes: #943908, #944379
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Bug#945345: therion: Missing build-dep on python; build-depend on python3 instead

2019-11-23 Thread Olly Betts
On Fri, Nov 22, 2019 at 11:30:00PM -0800, Steve Langasek wrote:
> Rather than adding a build-dependency on python, which is deprecated, I have
> attached a patch which moves the invocation to python3 instead and added a
> build-dependency on python3.

I do wish upstream would pick a scripting language.  There are scripts
in python, perl and tcl.

Feel free to NMU your fix.

Cheers,
Olly



Bug#943705:

2019-11-23 Thread joh bud



Bug#943533: marked as done (ldh-gui-suite: fails to install: mv: cannot move '/tmp/debconf_SxQLyd2wY8' to '/var/lib/one.liberty/deckhost.conf': No such file or directory)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 01:34:28 +
with message-id 
and subject line Bug#943533: fixed in ldh-gui-suite 0.1~20190927-4
has caused the Debian Bug report #943533,
regarding ldh-gui-suite: fails to install: mv: cannot move 
'/tmp/debconf_SxQLyd2wY8' to '/var/lib/one.liberty/deckhost.conf': No such file 
or directory
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943533: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943533
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: ldh-gui-suite
Version: 0.1~20190927-3
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package failed to install. As
per definition of the release team this makes the package too buggy for
a release, thus the severity.

>From the attached log (scroll to the bottom...):

  Setting up ldh-gui-suite (0.1~20190927-3) ...
  mv: cannot move '/tmp/debconf_SxQLyd2wY8' to 
'/var/lib/one.liberty/deckhost.conf': No such file or directory
  dpkg: error processing package ldh-gui-suite (--configure):
   installed ldh-gui-suite package post-installation script subprocess returned 
error exit status 1
  Processing triggers for systemd (242-7) ...
  Processing triggers for libc-bin (2.29-2) ...
  Processing triggers for dictionaries-common (1.28.1) ...
  Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.40.0+dfsg-1) ...
  Errors were encountered while processing:
   ldh-gui-suite


You probably need to ship /var/lib/one.liberty as an empty directory
in the package.


cheers,

Andreas


ldh-gui-suite_0.1~20190927-3.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: ldh-gui-suite
Source-Version: 0.1~20190927-4

We believe that the bug you reported is fixed in the latest version of
ldh-gui-suite, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 943...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Jonas Smedegaard  (supplier of updated ldh-gui-suite package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Mon, 18 Nov 2019 23:00:39 +0100
Source: ldh-gui-suite
Architecture: source
Version: 0.1~20190927-4
Distribution: unstable
Urgency: medium
Maintainer: Jonas Smedegaard 
Changed-By: Jonas Smedegaard 
Closes: 942657 942703 943533 943568
Changes:
 ldh-gui-suite (0.1~20190927-4) unstable; urgency=medium
 .
   * Fix ship empty directory /var/lib/one.liberty;
 closes: Bug#943533; thanks to Andreas Beckmann.
   * Add german (de), french (fr), and portuguese (pt) translations;
 closes: Bug#943568, #942703, #942657;
 thanks to Helge Kreutzmann, Jean-Philippe MENGUAL,
 and Américo Monteiro.
   * Update strings, fuzzying fr and pt translations.
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Bug#936745: re: ipywidgets: Python2 removal in sid/bullseye

2019-11-23 Thread Scott Kitterman
On Tue, 19 Nov 2019 06:59:36 + peter green  wrote:
> unblock 936745 by 936995
> severity 936745 serious
> thanks
> 
> matplotlib2 no longer has any dependencies or build-dependencies on packages 
built from the ipywidgets source.
> 
> According to https://ftp-master.debian.org/users/dktrkranz/NBS ipywidgets 
has dependencies or build-depdencies on several packages that are no longer 
built by their corresponding source packages.
> 
> ipywidgets build-depends on python-coverage.
> python-widgetsnbextension depends on python-notebook
> 
> It seems like it is time to drop python2 support from this package.

Sagemath still build-depends on it, but it's already not in testing for many 
reasons, so I agree it makes sense to go ahead with the removal.  

Scott K

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Description: This is a digitally signed message part.


Bug#945348: python3-joblib: Missing new dependency python3-pkg-resources

2019-11-23 Thread Yaroslav Halchenko


On Sat, 23 Nov 2019, Andreas Tille wrote:

> Package: python3-joblib
> Version: 0.14.0-0.2
> Severity: critical
> Tags: patch
> Justification: breaks unrelated software


> Hi,

> as per latest debci log of spades[1] joblib needs python3--pkg-resources.

> I will add this to the dependencies but I will also take over joblib
> packaging to Debian Science team to make the package watched by a
> greater audience.  I've got confirmation from Yaroslav for similar
> cases in the past so I assume its OK.

Yes, thank you Andreas!  If you could also keep it at debcompat 10, all
backport gods would favor you ;)

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834   Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik



Bug#945196: marked as done (mes: ships /usr/lib//{crt1.o,libc.a})

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sun, 24 Nov 2019 00:34:48 +
with message-id 
and subject line Bug#945196: fixed in mes 0.20-3
has caused the Debian Bug report #945196,
regarding mes: ships /usr/lib//{crt1.o,libc.a}
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945196: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945196
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mes
Version: 0.20-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'sid' to 'experimental'.
It installed fine in 'sid', then the upgrade to 'experimental' fails
because it tries to overwrite other packages files.

>From the attached log (scroll to the bottom...):

  Preparing to unpack .../archives/mes_0.20-1_amd64.deb ...
  Unpacking mes (0.20-1) ...
  dpkg: error processing archive /var/cache/apt/archives/mes_0.20-1_amd64.deb 
(--unpack):
   trying to overwrite '/usr/lib/x86_64-linux-gnu/crt1.o', which is also in 
package libc6-dev:amd64 2.29-3
  dpkg-deb: error: paste subprocess was killed by signal (Broken pipe)
  Errors were encountered while processing:
   /var/cache/apt/archives/mes_0.20-1_amd64.deb

The following files should most likely *not* be shipped by this package:

  usr/lib/x86_64-linux-gnu/crt1.o
  usr/lib/x86_64-linux-gnu/libc.a


cheers,

Andreas


libc6-dev=2.29-3_mes=0.20-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: mes
Source-Version: 0.20-3

We believe that the bug you reported is fixed in the latest version of
mes, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Vagrant Cascadian  (supplier of updated mes package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Sat, 23 Nov 2019 15:55:05 -0800
Source: mes
Architecture: source
Version: 0.20-3
Distribution: unstable
Urgency: medium
Maintainer: Vagrant Cascadian 
Changed-By: Vagrant Cascadian 
Closes: 945196
Changes:
 mes (0.20-3) unstable; urgency=medium
 .
   * debian/rules: Call configure with --libdir argument that puts mes
 libraries into a "mes" subdir (Closes: #945196). Thanks to Andreas
 Beckmann for the report.
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Bug#945381: python3-bcolz: missing Breaks+Replaces: python-bcolz

2019-11-23 Thread Andreas Beckmann
Package: python3-bcolz
Version: 1.2.1+ds2-4
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'testing'.
It installed fine in 'testing', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces

>From the attached log (scroll to the bottom...):

  Preparing to unpack .../python3-bcolz_1.2.1+ds2-4_amd64.deb ...
  Unpacking python3-bcolz (1.2.1+ds2-4) ...
  dpkg: error processing archive 
/var/cache/apt/archives/python3-bcolz_1.2.1+ds2-4_amd64.deb (--unpack):
   trying to overwrite 
'/usr/share/doc/python3-bcolz/tutorials/tutorial_carray.ipynb', which is also 
in package python-bcolz 1.2.1+ds2-2+b1
  Errors were encountered while processing:
   /var/cache/apt/archives/python3-bcolz_1.2.1+ds2-4_amd64.deb


cheers,

Andreas


python-bcolz=1.2.1+ds2-2+b1_python3-bcolz=1.2.1+ds2-4.log.gz
Description: application/gzip


Bug#765854: Umount ecryptfs on logout

2019-11-23 Thread Sudip Mukherjee
Hi All,

Is anything happening with this? 

Will it be a problem anywhere if the session is removed from
common-session-noninteractive like Michael suggested?

Or another way I was testing today is to get the name of the parent
process from mount.ecryptfs_private.c and skip incrementing the counter
if the parent process is 'systemd'.


--
Regards
Sudip



Bug#943571: marked as done (sa-exim: Does not work with exim 4.93)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 23:20:58 +
with message-id 
and subject line Bug#943571: fixed in sa-exim 4.2.1-18
has caused the Debian Bug report #943571,
regarding sa-exim: Does not work with exim 4.93
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943571: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943571
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: sa-exim
Version: 4.2.1-17
Severity: normal

I am moving this from direct maintainer-contact to the BTS.
https://alioth-lists.debian.net/pipermail/pkg-exim4-maintainers/2019-October/016333.html
https://alioth-lists.debian.net/pipermail/pkg-exim4-maintainers/2019-October/016341.html

#1 sa-exim 4.2.1-17 (binary) does not work with exim 4.93 since some
exported functions have been replaced by #defines. Once the sources are
compatible a rebuild will be necessary.

#2 If sa-exim is changed to pass -DLOCAL_SCAN and exim bug
https://bugs.exim.org/show_bug.cgi?id=2458 is patched then sa-exim
compiles.

#3 Updating the local_can patch in GIT
https://salsa.debian.org/exim-team/exim4/blob/experimental/debian/patches/90_localscan_dlopen.dpatch
with #pragma GCC visibility push(default)/#pragma GCC visibility pop in
src/string.c at about lines 412/464 gets rid of "undefined symbol:" 451
error in SMTP dialogue.

However we get a SIG 11:
2019-10-26 18:39:05 1iOP5l-000768-O8 local_scan() library doesn't contain 
local_scan_version_major() function - message temporarily rejected
2019-10-26 18:39:05 1iOP5l-000768-O8 local_scan() function crashed with signal 
11 - message temporarily rejected (size 265)


It is unlikely that I will invest further time/effort in this issue.

cu Andreas
--- End Message ---
--- Begin Message ---
Source: sa-exim
Source-Version: 4.2.1-18

We believe that the bug you reported is fixed in the latest version of
sa-exim, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 943...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Magnus Holmgren  (supplier of updated sa-exim package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Sat, 23 Nov 2019 22:40:24 +0100
Source: sa-exim
Architecture: source
Version: 4.2.1-18
Distribution: unstable
Urgency: medium
Maintainer: Magnus Holmgren 
Changed-By: Magnus Holmgren 
Closes: 943571
Changes:
 sa-exim (4.2.1-18) unstable; urgency=medium
 .
   * Build with -DLOCAL_SCAN.
   * sprintf_no_format_string.patch: With exim 4.93, string_sprintf()
 requires at least two arguments (Closes: #943571). Thanks to Andreas
 Metzler.
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Bug#944911: marked as done (libfiu: FBTFS: Found too many matching python3 bindings)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 22:35:11 +
with message-id 
and subject line Bug#944911: fixed in libfiu 1.00-4
has caused the Debian Bug report #944911,
regarding libfiu: FBTFS: Found too many matching python3 bindings
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
944911: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=944911
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libfiu
Version: 1.00-3+b1
Severity: serious
Tags: ftbfs
Justification: fails to build from source (but built successfully in the past)

libfiu fails to build from source:
| ./wrap-python 3 ./test-manyfps.py
| Found too many matching python3 bindingsmake[3]: *** [Makefile:96: 
py-run-test-manyfps] Error 1
| make[3]: *** Waiting for unfinished jobs
| make[4]: Leaving directory '/<>/tests/utils'
| parallel nc: 6372609   c: 8276708   e: 509422t: 15158739
| wildcard nc: 577000c: 599000e: 1566  t: 1177566
| rm test-enable_stack test-parallel-wildcard test-parallel test-ferror 
test-enable_stack_by_name
| make[3]: Leaving directory '/<>/tests'
| make[2]: *** [Makefile:58: test] Error 2
| make[2]: Leaving directory '/<>'
| dh_auto_test: make -j4 test V=1 LC_ALL=C returned exit code 2
| make[1]: *** [debian/rules:28: override_dh_auto_test] Error 255
| make[1]: Leaving directory '/<>'
| make: *** [debian/rules:12: build-arch] Error 2
| dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit 
status 2

The full build log can be found there:
https://buildd.debian.org/fetch.php?pkg=libfiu=amd64=1.00-3%2Bb1=1573820091=0
--- End Message ---
--- Begin Message ---
Source: libfiu
Source-Version: 1.00-4

We believe that the bug you reported is fixed in the latest version of
libfiu, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 944...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Chris Lamb  (supplier of updated libfiu package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Sat, 23 Nov 2019 17:26:03 -0500
Source: libfiu
Architecture: source
Version: 1.00-4
Distribution: unstable
Urgency: medium
Maintainer: Chris Lamb 
Changed-By: Chris Lamb 
Closes: 944911
Changes:
 libfiu (1.00-4) unstable; urgency=medium
 .
   * Don't FTBFS when multiple Python version libraries exist in build tree by
 manually deleting all but the version for the default Python version
 returned by py3versions prior to running the test suite. (Closes: #944911)
   * Specify Rules-Requires-Root: no.
   * Bump Standards-Version to 4.4.1.
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Processed: fixed 928420 in 3.4.4-1

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> # the 3.4.3-4.1 changelog got lost in the 3.4.4-1 upload
> fixed 928420 3.4.4-1
Bug #928420 {Done: Dominik George } [src:php-imagick] 
php-imagick: CVE-2019-11037
Marked as fixed in versions php-imagick/3.4.4-1.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
928420: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=928420
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: unarchiving 928420

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> unarchive 928420
Bug #928420 {Done: Dominik George } [src:php-imagick] 
php-imagick: CVE-2019-11037
Unarchived Bug 928420
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
928420: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=928420
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#943574: marked as done (pyhoca-gui: Please don't depend on python-notify)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 21:19:34 +
with message-id 
and subject line Bug#943574: fixed in pyhoca-gui 0.5.1.0-1
has caused the Debian Bug report #943574,
regarding pyhoca-gui: Please don't depend on python-notify
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943574: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943574
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pyhoca-gui
Version: 0.5.0.8-1
Severity: serious
User: pkg-gnome-maintain...@lists.alioth.debian.org
Usertags: oldlibs pygtk
Tags: sid bullseye

As part of the Python2 removal, the Debian GNOME team is working to
remove pygtk from Debian. One of the blockers is python-notify.

Please drop pyhoca-gui's dependency on python-notify so that we can
remove python-notify from Debian.

In my quick look at the source code, it looks like the dependency on
python-notify is obsolete since you already depend on
gir1.2-notify-0.7 .

https://sources.debian.org/src/pyhoca-gui/0.5.0.8-1/pyhoca/wxgui/notify.py/#L25-L32

If you have any questions don't hesitate to ask.

On behalf of the Debian GNOME team,
Jeremy Bicha
--- End Message ---
--- Begin Message ---
Source: pyhoca-gui
Source-Version: 0.5.1.0-1

We believe that the bug you reported is fixed in the latest version of
pyhoca-gui, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 943...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Mike Gabriel  (supplier of updated pyhoca-gui package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 23 Nov 2019 21:59:53 +0100
Source: pyhoca-gui
Architecture: source
Version: 0.5.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Remote Maintainers 
Changed-By: Mike Gabriel 
Closes: 943574
Changes:
 pyhoca-gui (0.5.1.0-1) unstable; urgency=medium
 .
   * New upstream release.
   * debian/control:
 + Add Rules-Requires-Root: field and set it to no.
 + Bump Standards-Version: to 4.4.1. No changes needed.
 + debian/control: Drop from D (pyhoca-gui): python-notify.
   (Closes: #943574).
   * debian/patches:
 + Drop 0001_po-Update-Bokmail-Norwegian-translation-file.-Thanks.patch.
   Applied upstream.
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Bug#943574: marked as pending in pyhoca-gui

2019-11-23 Thread Mike Gabriel
Control: tag -1 pending

Hello,

Bug #943574 in pyhoca-gui reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/debian-remote-team/pyhoca-gui/commit/f386489f4b10682987aeeb932c16b0dbfe0e792e


debian/control: Drop from D (pyhoca-gui): python-notify. (Closes: #943574).


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/943574



Processed: Bug#943574 marked as pending in pyhoca-gui

2019-11-23 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #943574 [src:pyhoca-gui] pyhoca-gui: Please don't depend on python-notify
Added tag(s) pending.

-- 
943574: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943574
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945369: yard: CVE-2019-1020001

2019-11-23 Thread Salvatore Bonaccorso
Source: yard
Version: 0.9.16-1
Severity: grave
Tags: security upstream
Justification: user security hole

Hi,

The following vulnerability was published for yard.

CVE-2019-1020001[0]:
| yard before 0.9.20 allows path traversal.


If you fix the vulnerability please also make sure to include the
CVE (Common Vulnerabilities & Exposures) id in your changelog entry.

For further information see:

[0] https://security-tracker.debian.org/tracker/CVE-2019-1020001
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-1020001
[1] https://github.com/lsegal/yard/security/advisories/GHSA-xfhh-rx56-rxcr

Please adjust the affected versions in the BTS as needed.

Regards,
Salvatore



-- System Information:
Debian Release: bullseye/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.3.0-2-amd64 (SMP w/2 CPU cores)
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE=C.UTF-8 
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled



Bug#944249: [Pkg-emacsen-addons] Bug#944249: gnuplot-mode does not work with emacs26

2019-11-23 Thread Nicholas D Steeves
Hi Dima,

On Sat, Nov 23, 2019 at 02:08:30AM -0800, Dima Kogan wrote:
> Nicholas D Steeves  writes:
> 
> > Is that an official NACK for Augustin's patch for the autoloads?  I
> > included it in the patch series I just sent...
> 
> Hi. I tried out Augustin's update to the autoloads, and it works for me
> (thanks, Augustin!) Nicholas: you wanted to review and to improve
> things. Are your patches somewhere we can see them?

I've confirmed this bug has my patch series (with Augustin's work
integrated).  Maybe those emails are in your spam folder?  You should
be able to use bts to grab the mbox for importation vs git am.

Cheers,
Nicholas


signature.asc
Description: PGP signature


Bug#945341: marked as done (libcgal-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 19:34:41 +
with message-id 
and subject line Bug#945341: fixed in cgal 5.0-2
has caused the Debian Bug report #945341,
regarding libcgal-dev: unhandled symlink to directory conversion: 
/usr/share/doc/PACKAGE
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945341: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945341
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libcgal-dev
Version: 5.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

an upgrade test with piuparts revealed that your package installs files
over existing symlinks and possibly overwrites files owned by other
packages. This usually means an old version of the package shipped a
symlink but that was later replaced by a real (and non-empty)
directory. This kind of overwriting another package's files cannot be
detected by dpkg.

This was observed on the following upgrade paths:

  sid -> experimental

For /usr/share/doc/PACKAGE this may not be problematic as long as both
packages are installed, ship byte-for-byte identical files and are
upgraded in lockstep. But once one of the involved packages gets
removed, the other one will lose its documentation files, too,
including the copyright file, which is a violation of Policy 12.5:
https://www.debian.org/doc/debian-policy/ch-docs.html#copyright-information

For other overwritten locations anything interesting may happen.

Note that dpkg intentionally does not replace directories with symlinks
and vice versa, you need the maintainer scripts to do this.
See in particular the end of point 4 in
https://www.debian.org/doc/debian-policy/ch-maintainerscripts.html#details-of-unpack-phase-of-installation-or-upgrade

It is recommended to use the dpkg-maintscript-helper commands
'dir_to_symlink' and 'symlink_to_dir' (available since dpkg 1.17.14)
to perform the conversion, ideally using d/$PACKAGE.maintscript.
See dpkg-maintscript-helper(1) and dh_installdeb(1) for details.


>From the attached log (scroll to the bottom...):

0m24.9s ERROR: FAIL: silently overwrites files via directory symlinks:
  /usr/share/doc/libcgal-dev/NEWS.Debian.gz (libcgal-dev:amd64) != 
/usr/share/doc/libcgal13/NEWS.Debian.gz (libcgal13:amd64)
/usr/share/doc/libcgal-dev -> libcgal13
  /usr/share/doc/libcgal-dev/README.Debian (libcgal-dev:amd64) != 
/usr/share/doc/libcgal13/README.Debian (libcgal13:amd64)
/usr/share/doc/libcgal-dev -> libcgal13
  /usr/share/doc/libcgal-dev/changelog.Debian.gz (libcgal-dev:amd64) != 
/usr/share/doc/libcgal13/changelog.Debian.gz (libcgal13:amd64)
/usr/share/doc/libcgal-dev -> libcgal13
  /usr/share/doc/libcgal-dev/changelog.gz (libcgal-dev:amd64) != 
/usr/share/doc/libcgal13/changelog.gz (libcgal13:amd64)
/usr/share/doc/libcgal-dev -> libcgal13
  /usr/share/doc/libcgal-dev/copyright (libcgal-dev:amd64) != 
/usr/share/doc/libcgal13/copyright (libcgal13:amd64)
/usr/share/doc/libcgal-dev -> libcgal13


cheers,

Andreas


libcgal-dev_5.0-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: cgal
Source-Version: 5.0-2

We believe that the bug you reported is fixed in the latest version of
cgal, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Joachim Reichel  (supplier of updated cgal package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 23 Nov 2019 10:41:42 +0100
Source: cgal
Binary: libcgal-demo libcgal-dev libcgal-ipelets libcgal-ipelets-dbgsym 
libcgal-qt5-dev
Architecture: source
Version: 5.0-2
Distribution: experimental
Urgency: medium
Maintainer: Joachim Reichel 
Changed-By: Joachim Reichel 
Description:
 libcgal-demo - C++ library for computational geometry (demos)
 libcgal-dev - C++ library for computational geometry (development files)
 libcgal-ipelets - C++ library for computational geometry (ipelets)
 libcgal-qt5-dev - C++ library for computational geometry (development files, 
suppor
Closes: 945341
Changes:
 cgal (5.0-2) experimental; urgency=medium
 .
   * Add libcgal-dev.maintscript to convert 

Bug#945316: polymake: FTBFS with perl 5.30

2019-11-23 Thread Andreas Beckmann
Control: affects 941933 + src:polymake
Control: retitle -1 polymake: FTBFS with normaliz 3.8.1: segfaults during tests

On 23/11/2019 10.45, Benjamin Lorenz wrote:
> On 22/11/2019 22.06, Andreas Beckmann wrote:
>> polymake FTBFS against perl 5.30:

> This was already reported and should be fixed with
> https://bugs.debian.org/941933
> but it seems that the builds need to be triggered again as the logs are
> older than the normaliz 3.8.1+ds-1 upload.

OK, tried my first self-served give-backs ...

... some architectures succeeed (arm64, s390x), some had tests failing
with segmentation faults (amd64, i386, armhf, ppc64el), mips*el is
still building.

https://buildd.debian.org/status/package.php?p=polymake=unstable

Andreas



Processed: Re: Bug#945316: polymake: FTBFS with perl 5.30

2019-11-23 Thread Debian Bug Tracking System
Processing control commands:

> affects 941933 + src:polymake
Bug #941933 {Done: Jerome Benoit } [libnormaliz-dev] 
polymake: FTBFS: no more rules available to compute 'HILBERT_BASIS_GENERATORS'
Added indication that 941933 affects src:polymake
> retitle -1 polymake: FTBFS with normaliz 3.8.1: segfaults during tests
Bug #945316 [src:polymake] polymake: FTBFS with perl 5.30
Changed Bug title to 'polymake: FTBFS with normaliz 3.8.1: segfaults during 
tests' from 'polymake: FTBFS with perl 5.30'.

-- 
941933: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=941933
945316: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945316
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945343: marked as done (sumo: FTBFS without Internet access)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 19:21:04 +
with message-id 
and subject line Bug#945343: fixed in sumo 1.3.1-5
has caused the Debian Bug report #945343,
regarding sumo: FTBFS without Internet access
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945343: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945343
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: sumo
Version: 1.3.1-4
Severity: serious
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu focal

Hi Anton,

The sumo package fails to build from source in Ubuntu because it cannot
resolve an Internet hostname:

[...]
cd /<>/tests_auto; cp /<>/debian/tests/hokkaido/* ./; 
../bin/sumo -b 0 -e 1 -n net.net.xml -r input_routes.rou.xml 
--summary-output sum.out
Warning: Environment variable SUMO_HOME is not set, schema resolution will use 
slow website lookups.
Error: unable to resolve host/address 'sumo.dlr.de'
 In file 'input_routes.rou.xml'
 At line/column 1/0.
[...]

  (https://launchpad.net/ubuntu/+source/sumo/1.3.1-4/+build/17963765)

Packages are by policy not allowed to depend on Internet access during
build.  This happens to not cause a build failure on any of the Debian
autobuilders because they happen to allow Internet access, but it is still a
violation of the policy for builds.

-- 
Steve Langasek   Give me a lever long enough and a Free OS
Debian Developer   to set it on, and I can move the world.
Ubuntu Developer   https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org


signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: sumo
Source-Version: 1.3.1-5

We believe that the bug you reported is fixed in the latest version of
sumo, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Anton Gladky  (supplier of updated sumo package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 23 Nov 2019 20:02:54 +0100
Source: sumo
Architecture: source
Version: 1.3.1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Closes: 945343
Changes:
 sumo (1.3.1-5) unstable; urgency=medium
 .
   * [12e5965] Set SUMO_HOME to escape network usage during build.
   (Closes: #945343)
   * [33f60f2] Let autopkgtests be built without network
   * [fd3c58c] Set Standards-Version to 4.4.1
   * [89e5a7f] Set upstream metadata fields: Repository.
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sumo_1.3.1-5_source.buildinfo

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Bug#945267: marked as pending in devscripts

2019-11-23 Thread Mattia Rizzolo
Control: tag -1 pending

Hello,

Bug #945267 in devscripts reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/debian/devscripts/commit/d05c232bdade67de0b841bde83e562cce6617366


Make the Python code compliant with pylint-2.4.4.  Closes: #945267

Signed-off-by: Mattia Rizzolo 


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/945267



Processed: retitle 928131 to julia: FTBFS on arm64 and armhf, found 928131 in 1.2.0+dfsg-1

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> retitle 928131 julia: FTBFS on arm64 and armhf
Bug #928131 [src:julia] julia: FTBFS on armhf, i386, ppc64el
Changed Bug title to 'julia: FTBFS on arm64 and armhf' from 'julia: FTBFS on 
armhf, i386, ppc64el'.
> found 928131 1.2.0+dfsg-1
Bug #928131 [src:julia] julia: FTBFS on arm64 and armhf
Marked as found in versions julia/1.2.0+dfsg-1.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
928131: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=928131
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Processed: Bug#945267 marked as pending in devscripts

2019-11-23 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #945267 [devscripts] FTBFS: FAIL: test_pylint 
(devscripts.test.test_pylint.PylintTestCase)
Added tag(s) pending.

-- 
945267: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945267
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945316: polymake: FTBFS with perl 5.30

2019-11-23 Thread David Bremner
Benjamin Lorenz  writes:

> On 22/11/2019 22.06, Andreas Beckmann wrote:
>> polymake FTBFS against perl 5.30:
>> https://buildd.debian.org/status/package.php?p=polymake=unstable
>> 
>> *** Summary ***
>> 
>> *** Failed tests ***
>> 
>> /<>/apps/polytope/src/gc_closure.cc:173: testcase 1
>> expected: regular return
>>  got: EXCEPTION: no more rules available to compute 
>> 'HILBERT_BASIS_GENERATORS'
>> 
>> make[1]: *** [debian/rules:41: override_dh_auto_test] Error 1
>
> This was already reported and should be fixed with
> https://bugs.debian.org/941933
> but it seems that the builds need to be triggered again as the logs are
> older than the normaliz 3.8.1+ds-1 upload.
>
> Benjamin

Hello Benjamin;

That's true, however with normaliz 3.8.1 I also get test failures.

[ /functions/Producing a polytope from polytopes/stack ] 1
verifying: 1 OK
 [ /functions/Triangulations, subdivisions and volume/staircase_weight ] 1
verifying: 1 OK
 [ /functions/Producing a polytope from polytopes/tensor ] 1
verifying: 1 OK
 [ /functions/Optimization/totally_dual_integral ] 1Segmentation fault

Full log is attached.



polymake_3.2r4-4_amd64-2019-11-23T16:47:22Z.build.gz
Description: application/gzip


Processed: reassign 945205 to libwacom-bin, severity of 945205 is important

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reassign 945205 libwacom-bin
Bug #945205 [bugs.debian.org] Wacom Cintiq 27QHD not working [as it did in 
Stretch]
Bug reassigned from package 'bugs.debian.org' to 'libwacom-bin'.
Ignoring request to alter found versions of bug #945205 to the same values 
previously set
Ignoring request to alter fixed versions of bug #945205 to the same values 
previously set
> severity 945205 important
Bug #945205 [libwacom-bin] Wacom Cintiq 27QHD not working [as it did in Stretch]
Severity set to 'important' from 'grave'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
945205: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945205
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#942688: NMU for elixir-lang

2019-11-23 Thread Santiago Vila
> >> As elixir-lang is going to be AUTORM if nobody takes care of it, I
> >> already added a bit of code in debian/rules to make it retry unit tests
> >> if they fail. It will retry 3 times, meaning that if it used to fail 10%
> >> of the time, making it retry 3 times makes the unit tests fail 0.01% of
> >> the times, which is IMO acceptable. The recent failures on some arch
> >> shows that my debian/rules hack works well! :)
> > 
> > Please don't do that sort of thing. It makes things gratuitously painful
> > for people like me doing QA.
> > 
> > Either a unit test is to be trusted or it's not (by "trusted" I mean
> > here that a failure in the test means the package is unsuitable for
> > release).
> > 
> > If the test is trusted but it fails, accept that it fails and do not
> > let the package to propagate to testing.
> > 
> > If it's not trusted, there is no point in making it to fail with any
> > probability. Not 10%, and not 0.01%. Just disable the test.
> > 
> > Thanks.
> 
> I don't agree with this view. Yes, this makes your work harder. But
> running tests improve the quality of the package. Removing them is in no
> way an improvement.

My complain here is specifically about artificially reducing the
probability of a random test to fail.

Remember that tests only improve the quality of the package when you
actually do something when they fail.

If you artificially reduce the probability and do nothing about
failing tests, there is no increase of quality at all.

[ Please Cc me on any replies, I'm not monitoring this bug ]

Thanks.



Bug#942789: marked as done (libbio-{db-{biofetch,gff,seqfeature},searchio-hmmer,tools-run-remoteblast}-perl: missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3))

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 16:49:30 +
with message-id 
and subject line Bug#942789: fixed in libbio-graphics-perl 2.40-5
has caused the Debian Bug report #942789,
regarding 
libbio-{db-{biofetch,gff,seqfeature},searchio-hmmer,tools-run-remoteblast}-perl:
 missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
942789: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942789
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: 
libbio-db-biofetch-perl,libbio-db-gff-perl,libbio-db-seqfeature-perl,libbio-searchio-hmmer-perl,libbio-tools-run-remoteblast-perl
Version: 1.7.3-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package fails to upgrade from
'testing'.
It installed fine in 'testing', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.

See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces

>From the attached log (scroll to the bottom...):

  Preparing to unpack .../libbio-db-biofetch-perl_1.7.3-1_all.deb ...
  Unpacking libbio-db-biofetch-perl (1.7.3-1) ...
  dpkg: error processing archive 
/var/cache/apt/archives/libbio-db-biofetch-perl_1.7.3-1_all.deb (--unpack):
   trying to overwrite '/usr/share/man/man3/Bio::DB::BioFetch.3pm.gz', which is 
also in package libbio-perl-perl 1.7.2-3
  Errors were encountered while processing:
   /var/cache/apt/archives/libbio-db-biofetch-perl_1.7.3-1_all.deb

The (<< 1.7.3) version constraint is based on my assumption that 1.7.3 split
up libbio-perl-perl into several independent source packages.


cheers,

Andreas


libbio-perl-perl=1.7.2-3_libbio-db-biofetch-perl=1.7.3-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: libbio-graphics-perl
Source-Version: 2.40-5

We believe that the bug you reported is fixed in the latest version of
libbio-graphics-perl, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 942...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe  (supplier of updated 
libbio-graphics-perl package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA512

Format: 1.8
Date: Sat, 23 Nov 2019 09:23:09 +0100
Source: libbio-graphics-perl
Architecture: source
Version: 2.40-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Michael R. Crusoe 
Closes: 942789
Changes:
 libbio-graphics-perl (2.40-5) unstable; urgency=medium
 .
   * Team upload.
   * debian/control: Breaks+Replaces the old libbio-bio-perl. (Closes: #942789)
   * debian/patches/spelling: fix typos
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Processed: Tagging Python 3.8 FTBFS

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> tags 943622 + ftbfs
Bug #943622 [src:python-biom-format] some python-biom-format tests fail with 
python3.8
Added tag(s) ftbfs.
> tags 945326 + ftbfs
Bug #945326 [src:pysph] pysph ftbfs in unstable
Added tag(s) ftbfs.
> tags 945328 + ftbfs
Bug #945328 [src:pyzmq] pyzmq ftbfs in unstable
Added tag(s) ftbfs.
> tags 945346 + ftbfs
Bug #945346 [src:python-skbio] python-skbio ftbfs in unstable
Added tag(s) ftbfs.
> tags 945330 + ftbfs
Bug #945330 [src:yt] yt ftbfs in unstable
Added tag(s) ftbfs.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
943622: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943622
945326: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945326
945328: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945328
945330: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945330
945346: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945346
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945202: marked as done (pytest-pylint: FTBFS in sid)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 10:30:24 -0500
with message-id 

and subject line Re: [Python-modules-team] Bug#945202: Bug#945202: 
pytest-pylint: FTBFS in sid
has caused the Debian Bug report #945202,
regarding pytest-pylint: FTBFS in sid
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945202: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945202
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pytest-pylint
Version: 0.14.1-2
Severity: serious

Hello, your packages FTBFS with default Python3.8 in sid

Can you please have a look?

I: Running cd /build/pytest-pylint-0.14.1/ && env 
PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us 
-uc 
dpkg-buildpackage: info: source package pytest-pylint
dpkg-buildpackage: info: source version 0.14.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Ond??ej Kobli??ek 
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
dpkg-source: info: using options from 
pytest-pylint-0.14.1/debian/source/options: 
--extend-diff-ignore=^[^/]*[.]egg-info/
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py clean 
running clean
removing 
'/build/pytest-pylint-0.14.1/.pybuild/cpython3_3.8_pytest-pylint/build' (and 
everything under it)
'build/bdist.linux-amd64' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean 
running clean
removing 
'/build/pytest-pylint-0.14.1/.pybuild/cpython3_3.7_pytest-pylint/build' (and 
everything under it)
'build/bdist.linux-amd64' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 dpkg-source -b .
dpkg-source: info: using options from 
pytest-pylint-0.14.1/debian/source/options: 
--extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building pytest-pylint using existing 
./pytest-pylint_0.14.1.orig.tar.gz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: building pytest-pylint in 
pytest-pylint_0.14.1-2.debian.tar.xz
dpkg-source: info: building pytest-pylint in pytest-pylint_0.14.1-2.dsc
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config 
running config
I: pybuild base:217: python3.7 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py build 
running build
running build_py
copying pytest_pylint.py -> 
/build/pytest-pylint-0.14.1/.pybuild/cpython3_3.8_pytest-pylint/build
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
copying pytest_pylint.py -> 
/build/pytest-pylint-0.14.1/.pybuild/cpython3_3.7_pytest-pylint/build
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/pytest-pylint-0.14.1'
dh_auto_install
I: pybuild base:217: /usr/bin/python3.8 setup.py install --root 
/build/pytest-pylint-0.14.1/debian/python3-pytest-pylint 
running install
running build
running build_py
running install_lib
creating /build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr
creating /build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr/lib
creating 
/build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr/lib/python3.8
creating 
/build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr/lib/python3.8/dist-packages
copying 
/build/pytest-pylint-0.14.1/.pybuild/cpython3_3.8_pytest-pylint/build/pytest_pylint.py
 -> 
/build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr/lib/python3.8/dist-packages
byte-compiling 
/build/pytest-pylint-0.14.1/debian/python3-pytest-pylint/usr/lib/python3.8/dist-packages/pytest_pylint.py
 to pytest_pylint.cpython-38.pyc
running install_egg_info
running egg_info
creating pytest_pylint.egg-info
writing pytest_pylint.egg-info/PKG-INFO
writing dependency_links to pytest_pylint.egg-info/dependency_links.txt
writing entry points to pytest_pylint.egg-info/entry_points.txt
writing requirements to pytest_pylint.egg-info/requires.txt
writing top-level names to 

Bug#942887: marked as done (python-fabio: autopkgtest failure.)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 14:49:38 +
with message-id 
and subject line Bug#942887: fixed in python-fabio 0.9.0+dfsg-3
has caused the Debian Bug report #942887,
regarding python-fabio: autopkgtest failure.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
942887: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942887
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: python-fabio
Version: 0.9.0+dfsg-2
Severity: serious

Python-fabio's autopkgtest is failing,


==
ERROR: testFullFormatName (fabio.test.testfabioconvert.TestFabioConvert)
--
Traceback (most recent call last):
   File "/usr/lib/python3/dist-packages/fabio/test/testfabioconvert.py", line 
135, in testFullFormatName
 image = fabio.open("output/03.npy")
   File "/usr/lib/python3/dist-packages/fabio/openimage.py", line 159, in 
openimage
 obj = obj.read(obj.filename, frame)
   File "/usr/lib/python3/dist-packages/fabio/numpyimage.py", line 161, in read
 self.dataset = numpy.load(infile)
   File "/usr/lib/python3/dist-packages/numpy/lib/npyio.py", line 447, in load
 pickle_kwargs=pickle_kwargs)
   File "/usr/lib/python3/dist-packages/numpy/lib/format.py", line 696, in 
read_array
 raise ValueError("Object arrays cannot be loaded when "
ValueError: Object arrays cannot be loaded when allow_pickle=False

--

This appears to be happening during both the unstable->testing migration tests 
and the pure unstable tests, but not during the pure testing tests.

--- End Message ---
--- Begin Message ---
Source: python-fabio
Source-Version: 0.9.0+dfsg-3

We believe that the bug you reported is fixed in the latest version of
python-fabio, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 942...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel  (supplier of updated python-fabio 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Sat, 23 Nov 2019 15:35:06 +0100
Source: python-fabio
Architecture: source
Version: 0.9.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Picca Frédéric-Emmanuel 
Closes: 942887
Changes:
 python-fabio (0.9.0+dfsg-3) unstable; urgency=medium
 .
   [ Alexandre Marie ]
   * Fixed autopkgtest with ec7a2d1 commit from upstream. (Closes: #942887)
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Bug#945349: (no subject)

2019-11-23 Thread Salvatore Bonaccorso
Hi William,

On Sat, Nov 23, 2019 at 10:42:16AM +0100, William Desportes wrote:
> Hello Salvatore,
> 
> I investigated while reporting the vulnerability, 4.6.6
> (https://packages.debian.org/source/oldstable/phpmyadmin) is not
> affected since the table name you need to reproduce the vulnerability is
> not supported.

Thanks for checking that and reporting back!

Regards,
Salvatore



Bug#914663: marked as done (gxtuner does not trap errors from make)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 13:20:48 +
with message-id 
and subject line Bug#914663: fixed in gxtuner 3.0-2
has caused the Debian Bug report #914663,
regarding gxtuner does not trap errors from make
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
914663: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914663
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: gxtuner
Version: 3.0-1
Severity: serious
Justification: policy 4.6

gxtuner's upstream Makefile does not trap errors from the compiler. Most
compiler invocations carry a "-" prefix used for ignoring errors. That
prefix violates policy section 4.6. It also makes debugging build
failures unnecessarily hard and facilitates misbuilds.

Helmut
--- End Message ---
--- Begin Message ---
Source: gxtuner
Source-Version: 3.0-2

We believe that the bug you reported is fixed in the latest version of
gxtuner, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 914...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sebastian Ramacher  (supplier of updated gxtuner package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 23 Nov 2019 13:58:24 +0100
Source: gxtuner
Architecture: source
Version: 3.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Multimedia Maintainers 
Changed-By: Sebastian Ramacher 
Closes: 914663
Changes:
 gxtuner (3.0-2) unstable; urgency=medium
 .
   [ Ondřej Nový ]
   * Team upload.
   * d/copyright: Use https protocol in Format field
   * d/control: Set Vcs-* to salsa.debian.org
 .
   [ Felipe Sateler ]
   * Change maintainer address to debian-multime...@lists.debian.org
 .
   [ Ondřej Nový ]
   * Use debhelper-compat instead of debian/compat
 .
   [ Sebastian Ramacher ]
   * debian/control:
 - Bump debhelper compat to 12
 - Bump Standards-Version
 - Set RRR: no
   * debian/patches: Trap errors (Closes: #914663)
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Bug#944468: marked as done (autopkg tests fail on 32bit architectures)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 11:34:32 +
with message-id 
and subject line Bug#944468: fixed in lapack 3.9.0-1
has caused the Debian Bug report #944468,
regarding autopkg tests fail on 32bit architectures
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
944468: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=944468
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: src:lapack
Version: 3.8.0-8
Severity: serious
Tags: sid bullseye patch

The autopkg tests fail on 32bit architectures, because the 64bit packages are 
not available.  Feel free to extend the list of 32bit archs to other architectures.


http://launchpadlibrarian.net/450724497/lapack_3.8.0-8_3.8.0-8ubuntu1.diff.gz
--- End Message ---
--- Begin Message ---
Source: lapack
Source-Version: 3.9.0-1

We believe that the bug you reported is fixed in the latest version of
lapack, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 944...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sébastien Villemot  (supplier of updated lapack package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 23 Nov 2019 11:25:11 +0100
Source: lapack
Architecture: source
Version: 3.9.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Closes: 944468
Changes:
 lapack (3.9.0-1) unstable; urgency=medium
 .
   [ Sébastien Villemot ]
   * d/watch: update for move to Github
   * New upstream version 3.9.0
   * lapacke-makefile.patch: drop patch, applied upstream
   * d/rules: adapt for renaming of variables and path changes in upstream
 Makefiles
   * liblapack-doc: remove unused override for spelling-error-in-manpage
   * missing-lapacke-prototypes.patch: new patch, fixes unresolved symbols in
 liblapacke
   * Adapt lapack autopkgtests for a behaviour change in lapack_testing.py
 .
   [ Matthias Klose ]
   * Don't run the 64bit autopkg tests on 32bit architectures.
 (Closes: #944468)
 .
   [ Mo Zhou ]
   * Also exclude the rest 32bit Arches (that doko missed) for autopkgtest.
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Bug#943615: marked as done (python-multidict ftbfs with python3.8 (test failures))

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 11:19:49 +
with message-id 
and subject line Bug#943615: fixed in python-multidict 4.6.1-1
has caused the Debian Bug report #943615,
regarding python-multidict ftbfs with python3.8 (test failures)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
943615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943615
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: src:python-multidict
Version: 4.5.2-1
Severity: important
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.8

test failures when running the tests with python3.8:

=== FAILURES ===
___ test_load_from_file[MultiDict-5] ___

pickle_protocol = 5, cls_name = 'MultiDict'

def test_load_from_file(pickle_protocol, cls_name):
cls = globals()[cls_name]
d = cls([('a', 1), ('a', 2)])
fname = '{}.pickle.{}'.format(cls_name.lower(), pickle_protocol)
p = here / fname
>   with p.open('rb') as f:

tests/test_pickle.py:113:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3.8/pathlib.py:1200: in open
return io.open(self, mode, buffering, encoding, errors, newline,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = 
PosixPath('/<>/.pybuild/cpython3_3.8_multidict/build/tests/multidict.pickle.5')
name = 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/multidict.pickle.5'

flags = 524288, mode = 438

def _opener(self, name, flags, mode=0o666):
# A stub for the opener argument to built-in open()
>   return self._accessor.open(self, flags, mode)
E   FileNotFoundError: [Errno 2] No such file or directory: 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/multidict.pickle.5'


/usr/lib/python3.8/pathlib.py:1054: FileNotFoundError
__ test_load_from_file[CIMultiDict-5] __

pickle_protocol = 5, cls_name = 'CIMultiDict'

def test_load_from_file(pickle_protocol, cls_name):
cls = globals()[cls_name]
d = cls([('a', 1), ('a', 2)])
fname = '{}.pickle.{}'.format(cls_name.lower(), pickle_protocol)
p = here / fname
>   with p.open('rb') as f:

tests/test_pickle.py:113:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3.8/pathlib.py:1200: in open
return io.open(self, mode, buffering, encoding, errors, newline,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = 
PosixPath('/<>/.pybuild/cpython3_3.8_multidict/build/tests/cimultidict.pickle.5')
name = 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/cimultidict.pickle.5'

flags = 524288, mode = 438

def _opener(self, name, flags, mode=0o666):
# A stub for the opener argument to built-in open()
>   return self._accessor.open(self, flags, mode)
E   FileNotFoundError: [Errno 2] No such file or directory: 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/cimultidict.pickle.5'


/usr/lib/python3.8/pathlib.py:1054: FileNotFoundError
__ test_load_from_file[PyMultiDict-5] __

pickle_protocol = 5, cls_name = 'PyMultiDict'

def test_load_from_file(pickle_protocol, cls_name):
cls = globals()[cls_name]
d = cls([('a', 1), ('a', 2)])
fname = '{}.pickle.{}'.format(cls_name.lower(), pickle_protocol)
p = here / fname
>   with p.open('rb') as f:

tests/test_pickle.py:113:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3.8/pathlib.py:1200: in open
return io.open(self, mode, buffering, encoding, errors, newline,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = 
PosixPath('/<>/.pybuild/cpython3_3.8_multidict/build/tests/pymultidict.pickle.5')
name = 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/pymultidict.pickle.5'

flags = 524288, mode = 438

def _opener(self, name, flags, mode=0o666):
# A stub for the opener argument to built-in open()
>   return self._accessor.open(self, flags, mode)
E   FileNotFoundError: [Errno 2] No such file or directory: 
'/<>/.pybuild/cpython3_3.8_multidict/build/tests/pymultidict.pickle.5'


/usr/lib/python3.8/pathlib.py:1054: FileNotFoundError
_ test_load_from_file[PyCIMultiDict-5] _

pickle_protocol = 5, cls_name = 'PyCIMultiDict'

def test_load_from_file(pickle_protocol, 

Bug#943615: marked as pending in python-multidict

2019-11-23 Thread Nicolas Dandrimont
Control: tag -1 pending

Hello,

Bug #943615 in python-multidict reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/python-team/modules/python-multidict/commit/f5d3ad5e508d5dab0f766e1ad5269c45d471be13


New upstream alpha release

  - Add support for Python3.8 (Closes: #943615)


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/943615



Processed: Bug#943615 marked as pending in python-multidict

2019-11-23 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #943615 [src:python-multidict] python-multidict ftbfs with python3.8 (test 
failures)
Added tag(s) pending.

-- 
943615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=943615
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945348: marked as done (python3-joblib: Missing new dependency python3-pkg-resources)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 10:19:32 +
with message-id 
and subject line Bug#945348: fixed in joblib 0.14.0-1
has caused the Debian Bug report #945348,
regarding python3-joblib: Missing new dependency python3-pkg-resources
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945348: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945348
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python3-joblib
Version: 0.14.0-0.2
Severity: critical
Tags: patch
Justification: breaks unrelated software


Hi,

as per latest debci log of spades[1] joblib needs python3--pkg-resources.

I will add this to the dependencies but I will also take over joblib
packaging to Debian Science team to make the package watched by a
greater audience.  I've got confirmation from Yaroslav for similar
cases in the past so I assume its OK.

Kind regards

   Andreas.


[1] 
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/spades/3485245/log.gz


-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'buildd-unstable'), (50, 'unstable'), (5, 
'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.2.0-3-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_WARN
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-joblib depends on:
ii  procps   2:3.3.15-2+b1
ii  python3  3.7.5-1

Versions of packages python3-joblib recommends:
ii  python3-numpy   1:1.16.5-1
ii  python3-psutil  5.5.1-1+b2
ii  python3-pytest  3.10.1-2
ii  python3-simplejson  3.16.0-2+b1

python3-joblib suggests no packages.

-- no debconf information
--- End Message ---
--- Begin Message ---
Source: joblib
Source-Version: 0.14.0-1

We believe that the bug you reported is fixed in the latest version of
joblib, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated joblib package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 23 Nov 2019 10:54:20 +0100
Source: joblib
Architecture: source
Version: 0.14.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Andreas Tille 
Closes: 945348
Changes:
 joblib (0.14.0-1) unstable; urgency=medium
 .
   * Team upload.
   * Move package to Debian Science team maintenance
   * debhelper-compat 12
   * Standards-Version: 4.4.1
   * Testsuite: autopkgtest-pkg-python
   * Secure URI in copyright format
   * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
   * Remove trailing whitespace in debian/changelog
   * Drop ancient X-Python-Version field
   * Set debhelper-compat version in Build-Depends.
   * Remove patches missing from debian/patches/series.
   * Set upstream metadata fields: Repository.
   * New Dependency: python*-pkg-resources
 Closes: #945348
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joblib_0.14.0-1_source.buildinfo

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Bug#944249: [Pkg-emacsen-addons] Bug#944249: gnuplot-mode does not work with emacs26

2019-11-23 Thread Dima Kogan
Nicholas D Steeves  writes:

> Is that an official NACK for Augustin's patch for the autoloads?  I
> included it in the patch series I just sent...

Hi. I tried out Augustin's update to the autoloads, and it works for me
(thanks, Augustin!) Nicholas: you wanted to review and to improve
things. Are your patches somewhere we can see them?



Bug#945349: (no subject)

2019-11-23 Thread William Desportes
Hello Salvatore,

I investigated while reporting the vulnerability, 4.6.6
(https://packages.debian.org/source/oldstable/phpmyadmin) is not
affected since the table name you need to reproduce the vulnerability is
not supported.

4.9.2 will patch the vulnerability

Regards,

William Desportes



Bug#945316: polymake: FTBFS with perl 5.30

2019-11-23 Thread Benjamin Lorenz
On 22/11/2019 22.06, Andreas Beckmann wrote:
> polymake FTBFS against perl 5.30:
> https://buildd.debian.org/status/package.php?p=polymake=unstable
> 
> *** Summary ***
> 
> *** Failed tests ***
> 
> /<>/apps/polytope/src/gc_closure.cc:173: testcase 1
> expected: regular return
>  got: EXCEPTION: no more rules available to compute 
> 'HILBERT_BASIS_GENERATORS'
> 
> make[1]: *** [debian/rules:41: override_dh_auto_test] Error 1

This was already reported and should be fixed with
https://bugs.debian.org/941933
but it seems that the builds need to be triggered again as the logs are
older than the normaliz 3.8.1+ds-1 upload.

Benjamin



signature.asc
Description: OpenPGP digital signature


Processed: your mail

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> forwarded 945349 https://salsa.debian.org/phpmyadmin-team/phpmyadmin/issues/30
Bug #945349 [src:phpmyadmin] phpmyadmin: CVE-2019-18622 / PMASA-2019-5
Set Bug forwarded-to-address to 
'https://salsa.debian.org/phpmyadmin-team/phpmyadmin/issues/30'.
> stop
Stopping processing here.

Please contact me if you need assistance.
-- 
945349: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945349
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945301: marked as done (libhsdis0-fcml: fails to install: find: '/usr/lib/jvm': No such file or directory)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 09:34:15 +
with message-id 
and subject line Bug#945301: fixed in fcml 1.2.0-2
has caused the Debian Bug report #945301,
regarding libhsdis0-fcml: fails to install: find: '/usr/lib/jvm': No such file 
or directory
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945301: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945301
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libhsdis0-fcml
Version: 1.2.0-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package failed to install. As
per definition of the release team this makes the package too buggy for
a release, thus the severity.

>From the attached log (scroll to the bottom...):

  Setting up libhsdis0-fcml:amd64 (1.2.0-1) ...
  find: '/usr/lib/jvm': No such file or directory
  dpkg: error processing package libhsdis0-fcml:amd64 (--configure):
   installed libhsdis0-fcml:amd64 package post-installation script subprocess 
returned error exit status 1
  Processing triggers for libc-bin (2.29-3) ...
  Errors were encountered while processing:
   libhsdis0-fcml:amd64


cheers,

Andreas


libhsdis0-fcml_1.2.0-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: fcml
Source-Version: 1.2.0-2

We believe that the bug you reported is fixed in the latest version of
fcml, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Stephen Kitt  (supplier of updated fcml package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA512

Format: 1.8
Date: Sat, 23 Nov 2019 10:15:42 +0100
Source: fcml
Architecture: source
Version: 1.2.0-2
Distribution: unstable
Urgency: medium
Maintainer: Stephen Kitt 
Changed-By: Stephen Kitt 
Closes: 945301
Changes:
 fcml (1.2.0-2) unstable; urgency=medium
 .
   * Check that /usr/lib/jvm exists before processing it. Closes: #945301.
   * Process all template maintainer scripts without listing them
 explicitly.
   * Remove symlinks in prerm rather than postrm, to avoid having invalid
 symlinks at any time.
   * Fix the generated symlinks (“hdis” → “hsdis”).
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Bug#945303: marked as done (calendar-google-provider: Please package version corresponding to thunderbird version)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 10:24:35 +0100
with message-id <5ce1a8de-43a4-f346-9754-d8ee2fc6b...@t-online.de>
and subject line Re: Bug#945303: calendar-google-provider: Please package 
version corresponding to thunderbird version
has caused the Debian Bug report #945303,
regarding calendar-google-provider: Please package version corresponding to 
thunderbird version
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945303: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945303
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: calendar-google-provider
Version: 1:60.9.0-1~deb10u1
Severity: grave
Justification: renders package unusable

Dear Maintainer,


Thunderbird and lightning packages were recently updated to 
1:68.2.2-1~deb10u1

to fix security problems, but calendar-google-provider has not been updated.

Anyone using the calendar-google-provider package must keep using the old
thunderbird with security vulnerabilities until the package is updated.



-- System Information:
Debian Release: 10.2
  APT prefers stable
  APT policy: (1000, 'stable'), (500, 'stable-updates')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_CA.utf8, LC_CTYPE=en_CA.utf8 (charmap=UTF-8), 
LANGUAGE=en_CA:en (charmap=UTF-8)

Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages calendar-google-provider depends on:
hi  lightning  1:60.9.0-1~deb10u1

calendar-google-provider recommends no packages.

calendar-google-provider suggests no packages.

-- no debconf information
--- End Message ---
--- Begin Message ---
Hello Jonathan,

Am 22.11.19 um 20:13 schrieb Jonathan Addleman:
> Thunderbird and lightning packages were recently updated to 
> 1:68.2.2-1~deb10u1
> to fix security problems, but calendar-google-provider has not been updated.
> 
> Anyone using the calendar-google-provider package must keep using the old
> thunderbird with security vulnerabilities until the package is updated.

you missed probably the latest NEWS entry for the thunderbird package.

> $ zless /usr/share/doc/thunderbird/NEWS.Debian.gz | head -n17
> thunderbird (1:68.2.2-1) unstable; urgency=medium
> 
>   Starting with version 68.2.2-1 src:thunderbird isn't building the binary
>   package calendar-google-provider any more.
> 
>   If you want or need to use this Add-On please install this extension from
> 
>   
> https://addons.thunderbird.net/en-GB/thunderbird/addon/provider-for-google-calendar/
> 
>   (Please choose your preferred language!)
> 
>   The removal of this Add-On from the Thunderbird source was discussed within
>   this issue:
> 
>   https://bugzilla.mozilla.org/show_bug.cgi?id=1584614
> 
>  -- Carsten Schoenert   Sun, 10 Nov 2019 11:07:00 
> +0100

So no, the source and the build of calendar-google-provider was dropped
by upstream and we haven't forgotten to update this package.

Unfortunately Mozilla isn't communicating such bigger changes very good
in public and we can mostly just reacting.

The removal was planned for a longer time was told me, but the code
within the source had some issue that 2FA wasn't working anymore and an
update wasn't possible in time so upstream decided to remove the AddOn
directly even if the version was just increased by a minor version.

I'll close your report by this email.

-- 
Regards
Carsten Schoenert--- End Message ---


Bug#945304: marked as done (calendar-google-provider: Please package version corresponding to thunderbird version)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 10:14:28 +0100
with message-id <503a14e2-1208-b3d6-f6d1-638b4bdbc...@t-online.de>
and subject line Re: Bug#945304: (calendar-google-provider: Please package 
version corresponding to thunderbird version)
has caused the Debian Bug report #945304,
regarding calendar-google-provider: Please package version corresponding to 
thunderbird version
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945304: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945304
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: calendar-google-provider
Version: 1:60.9.0-1~deb10u1
Severity: grave
Justification: renders package unusable

Dear Maintainer,


Thunderbird and lightning packages were recently updated to 1:68.2.2-1~deb10u1
to fix security problems, but calendar-google-provider has not been updated.

Anyone using the calendar-google-provider package must keep using the old
thunderbird with security vulnerabilities until the package is updated.



-- System Information:
Debian Release: 10.2
  APT prefers stable
  APT policy: (1000, 'stable'), (500, 'stable-updates')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_CA.utf8, LC_CTYPE=en_CA.utf8 (charmap=UTF-8), LANGUAGE=en_CA:en 
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages calendar-google-provider depends on:
hi  lightning  1:60.9.0-1~deb10u1

calendar-google-provider recommends no packages.

calendar-google-provider suggests no packages.

-- no debconf information
--- End Message ---
--- Begin Message ---
Hello Jonathan,

Am 22.11.19 um 22:49 schrieb Jonathan Addleman:
> Apologies for the duplicate submission. (#945393) Issues with my MTA, 
> and I thought the first one had bounced, but it had just been delayed...
> 
> This report can be closed/deleted.

you can close bug reports by your own.

Have a look at to read all the commands to control the Debian BTS.
https://www.debian.org/Bugs/server-control

Especially have a look at
https://www.debian.org/Bugs/Developer#closing

-- 
Regards
Carsten Schoenert--- End Message ---


Processed: Bug#945301 marked as pending in fcml

2019-11-23 Thread Debian Bug Tracking System
Processing control commands:

> tag -1 pending
Bug #945301 [libhsdis0-fcml] libhsdis0-fcml: fails to install: find: 
'/usr/lib/jvm': No such file or directory
Added tag(s) pending.

-- 
945301: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945301
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945301: marked as pending in fcml

2019-11-23 Thread Stephen Kitt
Control: tag -1 pending

Hello,

Bug #945301 in fcml reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:

https://salsa.debian.org/debian/fcml/commit/9cbc8414682b69fd74aa71ee5f3664c3a1d5f928


Check that /usr/lib/jvm exists before processing it

Closes: #945301


(this message was generated automatically)
-- 
Greetings

https://bugs.debian.org/945301



Bug#944265: mailutils: local privilege escalation in maidag utility (fixed in 3.8)

2019-11-23 Thread Salvatore Bonaccorso
Hi Jordi,

On Fri, Nov 22, 2019 at 02:22:00PM +0100, Jordi Mallach wrote:
> Hi all,
> 
> El dl. 11 de 11 de 2019 a les 21:32 +0100, en/na Salvatore Bonaccorso
> va escriure:
> > Control: retitle -1 mailutils: local privilege escalation in maidag
> > utility (fixed in 3.8) (CVE-2019-18862)
> 
> Given this does not affect Debian by default, should my upload go
> through debian-security or just s-p-u?
> 
> https://salsa.debian.org/debian/mailutils/commit/c1683e71301e3c7454ab407334a211759148d47e

I agree, that this does not warrant a DSA, so going via a point
release is fine. We have marked it with unimportant severity in the
security-tracker due to it's not installed setuid in any of the
supported suites.

Thanks for your work!

Regards,
Salvatore



Bug#942514: CVE-2019-16729 fixed in 1.0.4-1.1+deb8u1

2019-11-23 Thread Hugo Lefeuvre
fixed 942514 1.0.4-1.1+deb8u1
thanks

Hi Russell,

thanks for preparing this update. I just became aware of this and noticed
that no DLA was released. In fact, neither the bug tracker nor the security
tracker are aware of this issue being fixed.

Releasing DLA-2000-1 for this, updating the bug tracker as well.

regards,
Hugo

-- 
Hugo Lefeuvre (hle)|www.owl.eu.com
RSA4096_ 360B 03B3 BF27 4F4D 7A3F D5E8 14AA 1EB8 A247 3DFD
ed25519_ 37B2 6D38 0B25 B8A2 6B9F 3A65 A36F 5357 5F2D DC4C


signature.asc
Description: PGP signature


Processed: CVE-2019-16729 fixed in 1.0.4-1.1+deb8u1

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> fixed 942514 1.0.4-1.1+deb8u1
Bug #942514 [src:pam-python] pam-python: CVE-2019-16729: local root escalation
The source 'pam-python' and version '1.0.4-1.1+deb8u1' do not appear to match 
any binary packages
Marked as fixed in versions pam-python/1.0.4-1.1+deb8u1.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
942514: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942514
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945333: marked as done (r-cran-seurat: uninstallable in sid: Depends: r-cran-matrix (>= 1.2.14) but 1.2-17-2 is to be installed)

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 08:37:35 +
with message-id 
and subject line Bug#945333: fixed in r-cran-seurat 3.1.1-1
has caused the Debian Bug report #945333,
regarding r-cran-seurat: uninstallable in sid: Depends: r-cran-matrix (>= 
1.2.14) but 1.2-17-2 is to be installed
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
945333: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945333
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: r-cran-seurat
Version: 3.0.2-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts

Hi,

during a test with piuparts I noticed your package is no longer
installable in sid:

  The following packages have unmet dependencies:
   r-cran-seurat : Depends: r-cran-matrix (>= 1.2.14) but 1.2-17-2 is to be 
installed

This seems to be a '.' vs '-' typo.


Cheers,

Andreas
--- End Message ---
--- Begin Message ---
Source: r-cran-seurat
Source-Version: 3.1.1-1

We believe that the bug you reported is fixed in the latest version of
r-cran-seurat, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 945...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated r-cran-seurat package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Binary: r-cran-seurat
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Version: 3.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Andreas Tille 
Description:
 r-cran-seurat - Tools for Single Cell Genomics
Closes: 945333
Changes:
 r-cran-seurat (3.1.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
 Closes: #945333
   * dh-update-R to update Build-Depends
   * Trim trailing whitespace.
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Bug#945349: phpmyadmin: CVE-2019-18622 / PMASA-2019-5

2019-11-23 Thread Salvatore Bonaccorso
Source: phpmyadmin
Version: 4:4.9.1+dfsg1-2
Severity: grave
Tags: security upstream
Justification: user security hole

Hi,

The following vulnerability was published for phpmyadmin.

CVE-2019-18622[0]:
| An issue was discovered in phpMyAdmin before 4.9.2. A crafted
| database/table name can be used to trigger a SQL injection attack
| through the designer feature.


If you fix the vulnerability please also make sure to include the
CVE (Common Vulnerabilities & Exposures) id in your changelog entry.

For further information see:

[0] https://security-tracker.debian.org/tracker/CVE-2019-18622
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-18622
[1] https://www.phpmyadmin.net/security/PMASA-2019-5/

Please adjust the affected versions in the BTS as needed. Versions at
least as old as 4.7.7 are affected, possibly olders as well, but looks
upstream has only confirmed it (or investigated it) back to 4.7.7.

Regards,
Salvatore



Bug#945348: python3-joblib: Missing new dependency python3-pkg-resources

2019-11-23 Thread Andreas Tille
Package: python3-joblib
Version: 0.14.0-0.2
Severity: critical
Tags: patch
Justification: breaks unrelated software


Hi,

as per latest debci log of spades[1] joblib needs python3--pkg-resources.

I will add this to the dependencies but I will also take over joblib
packaging to Debian Science team to make the package watched by a
greater audience.  I've got confirmation from Yaroslav for similar
cases in the past so I assume its OK.

Kind regards

   Andreas.


[1] 
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/spades/3485245/log.gz


-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'buildd-unstable'), (50, 'unstable'), (5, 
'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.2.0-3-amd64 (SMP w/4 CPU cores)
Kernel taint flags: TAINT_WARN
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), 
LANGUAGE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages python3-joblib depends on:
ii  procps   2:3.3.15-2+b1
ii  python3  3.7.5-1

Versions of packages python3-joblib recommends:
ii  python3-numpy   1:1.16.5-1
ii  python3-psutil  5.5.1-1+b2
ii  python3-pytest  3.10.1-2
ii  python3-simplejson  3.16.0-2+b1

python3-joblib suggests no packages.

-- no debconf information



Bug#945347: radare2 FTBFS: meson.build:3:0: ERROR: ['/usr/bin/python3']> is not a valid python or it is missing setuptools

2019-11-23 Thread Helmut Grohne
Source: radare2
Version: 3.2.1+dfsg-5
Severity: serious
Tags: ftbfs

radare2 fails to build from source. A build notably says:

| meson.build:3:0: ERROR:  ['/usr/bin/python3']> 
is not a valid python or it is missing setuptools

https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/radare2_3.2.1+dfsg-5.rbuild.log.gz
http://crossqa.debian.net/build/radare2_3.2.1+dfsg-5_armel_20191115204904.log

According to crossqa logs this seems to have started between June 22nd
and August 20th. Presumably something changed about the Python
ecosystem.

I understand that this might be fixed in the NEW upload, but I cannot
check and poking at ftp-master didn't help thus far. Please just close
the bug in case this is already fixed.

Helmut



Bug#944844: marked as done (FTBFS on mips* (when building target LLVMAnalysis))

2019-11-23 Thread Debian Bug Tracking System
Your message dated Sat, 23 Nov 2019 09:09:40 +0100
with message-id <055356d8-a493-f646-920f-036019033...@debian.org>
and subject line Re: Bug#944844: FTBFS on mips* (when building target 
LLVMAnalysis)
has caused the Debian Bug report #944844,
regarding FTBFS on mips* (when building target LLVMAnalysis)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
944844: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=944844
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:llvm-toolchain-8
Version: 1:8.0.1-4
Severity: serious
Tags: ftbfs
User: debian-ocaml-ma...@lists.debian.org
Usertags: ocaml-4.08-transition

Dear Maintainer,

llvm-toolchain-8 FTBFS on mips*:

  https://buildd.debian.org/status/package.php?p=llvm-toolchain-8=unstable

This failure blocks the ocaml transition.


Cheers,

-- 
Stéphane

-- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 5.2.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---

fixed 944844 1:8.0.1-4
thanks

Le 19/11/2019 à 10:53, Sylvestre Ledru a écrit :

Le 16/11/2019 à 09:00, Stéphane Glondu a écrit :

Package: src:llvm-toolchain-8
Version: 1:8.0.1-4
Severity: serious
Tags: ftbfs
User: debian-ocaml-ma...@lists.debian.org
Usertags: ocaml-4.08-transition

Dear Maintainer,

llvm-toolchain-8 FTBFS on mips*:

https://buildd.debian.org/status/package.php?p=llvm-toolchain-8=unstable

This failure blocks the ocaml transition.


The error is:
../../../bin/llvm-tblgen(_ZN4llvm3sys15PrintStackTraceERNS_11raw_ostreamE+0x44)[0x1202c6564] 


Stack dump:
0.    Program arguments: ../../../bin/llvm-tblgen -gen-global-isel -I 
/<>/lib/Target/AArch64 -I /<>/include -I 
/<>/lib/Target 
/<>/lib/Target/AArch64/AArch64.td -o 
/<>/build-llvm/tools/clang/stage2-bins/lib/Target/AArch64/AArch64GenGlobalISel.inc

Bus error
Not sure what it means


A rebuild fixed it

llvm-toolchain-8 should not be a blocker anymore

S--- End Message ---


Processed: Re: Bug#944844: FTBFS on mips* (when building target LLVMAnalysis)

2019-11-23 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> fixed 944844 1:8.0.1-4
Bug #944844 [src:llvm-toolchain-8] FTBFS on mips* (when building target 
LLVMAnalysis)
Marked as fixed in versions llvm-toolchain-8/1:8.0.1-4.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
944844: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=944844
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#945346: python-skbio ftbfs in unstable

2019-11-23 Thread Matthias Klose
Package: src:python-skbio
Version: 0.5.5-2
Severity: serious
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.8

python-skbio ftbfs in unstable, two failing tests:

==
ERROR: test_munging_invalid_type_to_self_type
(skbio.sequence.tests.test_sequence.TestDistance)
--
Traceback (most recent call last):
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py",
line 2369, in test_munging_invalid_type_to_self_type
Sequence("ACGT").distance(42)
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 1539, in distance
other = self._munge_to_self_type(other, 'distance')
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 2161, in _munge_to_self_type
return self.__class__(other)
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 622, in __init__
s = np.frombuffer(sequence, dtype=np.uint8)
TypeError: a bytes-like object is required, not 'int'

==
ERROR: test_init_invalid_sequence 
(skbio.sequence.tests.test_sequence.TestSequence)
--
Traceback (most recent call last):
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/tests/test_sequence.py",
line 465, in test_init_invalid_sequence
Sequence(('a', 'b', 'c'))
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/sequence/_sequence.py",
line 622, in __init__
s = np.frombuffer(sequence, dtype=np.uint8)
TypeError: a bytes-like object is required, not 'tuple'

==
FAIL: test_no_variation_pearson 
(skbio.stats.distance.tests.test_mantel.MantelTests)
--
Traceback (most recent call last):
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_mantel.py",
line 250, in test_no_variation_pearson
npt.assert_equal(obs, (0.0, 1.0, 3))
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
355, in assert_equal
assert_equal(actual[k], desired[k], 'item=%r\n%s' % (k, err_msg), verbose)
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
427, in assert_equal
raise AssertionError(msg)
AssertionError:
Items are not equal:
item=0

 ACTUAL: nan
 DESIRED: 0.0

==
FAIL: test_one_sided_less (skbio.stats.distance.tests.test_mantel.MantelTests)
--
Traceback (most recent call last):
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/distance/tests/test_mantel.py",
line 189, in test_one_sided_less
self.assertEqual(obs, (1, 1, 3))
AssertionError: Tuples differ: (0.9998, 1.0, 3) != (1, 1, 3)

First differing element 0:
0.9998
1

- (0.9998, 1.0, 3)
+ (1, 1, 3)

==
FAIL: Test against a reference implementation from R's ape package
--
Traceback (most recent call last):
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py",
line 250, in test_pcoa_biplot_from_ape
assert_ordination_results_equal(obs, exp, ignore_directionality=True,
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_testing.py",
line 126, in assert_ordination_results_equal
_assert_frame_equal(left.features, right.features,
  File
"/<>/.pybuild/cpython3_3.8_skbio/build/skbio/util/_testing.py",
line 171, in _assert_frame_equal
npt.assert_almost_equal(left_values, right_values, decimal=decimal)
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
584, in assert_almost_equal
return assert_array_almost_equal(actual, desired, decimal, err_msg)
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
1027, in assert_array_almost_equal
assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose,
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
769, in assert_array_compare
flagged = func_assert_same_pos(x, y, func=isnan, hasval='nan')
  File "/usr/lib/python3/dist-packages/numpy/testing/_private/utils.py", line
745, in func_assert_same_pos
raise AssertionError(msg)
AssertionError:
Arrays are not almost equal to 7 decimals

x and y nan location mismatch:
 x: array([[-2.5170346e-02, -3.8742000e-02,  3.7030794e-02, -1.8248587e-02,
-1.2974103e-03,  8.1410679e-04, -1.7370121e-02,  3.6121106e-02,
   nan],...
 y: array([[-2.5170346e-02, -3.8742000e-02,  3.7030794e-02, -1.8248587e-02,