Bug#1023230: [Debian-med-packaging] Bug#1023230: t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours
Hi all, gregor herrmann, on 2022-11-01: > On Tue, 01 Nov 2022 09:12:43 +0900, Charles Plessy wrote: > > I think that t-coffee never worked on ARM. It built, but never worked. > > The simplest would be to distribute it only on amd64. > > See https://bugs.debian.org/631249 The program hogging CPU cycles on arm, ppc64el and s390x seemed symptomatic of the code assuming the type char is always signed. If I build t-coffee with -fsigned-char in the CFLAGS, it solves the issue on all those architectures for me. > Also https://bugs.debian.org/1022570 might be relevant. This is another problem in t-coffee, the aformentioned change is sufficient to fix the perl module. That being said, this also needs to be fixed. Have a nice day, :) -- Étienne Mollier Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/2, please excuse my verbosity. signature.asc Description: PGP signature
Processed: Re: Bug#1023230: [Debian-med-packaging] Bug#1023230: t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours
Processing control commands: > reassign -1 t-coffee 13.45.0.4846264+dfsg-1 Bug #1023230 [src:t-coffee, src:libbio-tools-run-alignment-tcoffee-perl] t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours Bug reassigned from package 'src:t-coffee, src:libbio-tools-run-alignment-tcoffee-perl' to 't-coffee'. No longer marked as found in versions libbio-tools-run-alignment-tcoffee-perl/1.7.4-3 and t-coffee/13.45.0.4846264+dfsg-1. Ignoring request to alter fixed versions of bug #1023230 to the same values previously set Bug #1023230 [t-coffee] t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours Marked as found in versions t-coffee/13.45.0.4846264+dfsg-1. -- 1023230: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1023230 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#1023230: [Debian-med-packaging] Bug#1023230: t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours
Control: reassign -1 t-coffee 13.45.0.4846264+dfsg-1 On Tue, 01 Nov 2022 09:12:43 +0900, Charles Plessy wrote: > Le Mon, Oct 31, 2022 at 09:27:47PM +0100, Paul Gevers a écrit : > > > > https://ci.debian.net/data/autopkgtest/testing/arm64/libb/libbio-tools-run-alignment-tcoffee-perl/27686780/log.gz > > > > autopkgtest [11:59:24]: ERROR: timed out on command "su -s /bin/bash debci > > I think that t-coffee never worked on ARM. It built, but never worked. > The simplest would be to distribute it only on amd64. > See https://bugs.debian.org/631249 Also https://bugs.debian.org/1022570 might be relevant. Reassigning to (only) t-coffee. Cheers, gregor -- .''`. https://info.comodo.priv.at -- Debian Developer https://www.debian.org : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 AA06 `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation Europe `- NP: Rolling Stones: Letitrock signature.asc Description: Digital Signature
Bug#1023230: [Debian-med-packaging] Bug#1023230: t-coffee breaks libbio-tools-run-alignment-tcoffee-perl autopkgtest: test times out after 2:47 hours
Le Mon, Oct 31, 2022 at 09:27:47PM +0100, Paul Gevers a écrit : > > https://ci.debian.net/data/autopkgtest/testing/arm64/libb/libbio-tools-run-alignment-tcoffee-perl/27686780/log.gz > > autopkgtest [11:59:24]: ERROR: timed out on command "su -s /bin/bash debci Hi all, I think that t-coffee never worked on ARM. It built, but never worked. The simplest would be to distribute it only on amd64. See https://bugs.debian.org/631249 Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://mastodon.technology/@charles_plessy Tooting from home, https://framapiaf.org/@charles_plessy
