Processed: Re: [Debian-med-packaging] Bug#1051325: sortmerna: FTBFS: concurrentqueue.h: No such file or directory

2023-09-06 Thread Debian Bug Tracking System 
Processing control commands:

> tags -1 + confirmed
Bug #1051325 [src:sortmerna] sortmerna: FTBFS: concurrentqueue.h: No such file 
or directory
Added tag(s) confirmed.

-- 
1051325: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1051325
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Bug#1051325: [Debian-med-packaging] Bug#1051325: sortmerna: FTBFS: concurrentqueue.h: No such file or directory

2023-09-06 Thread Étienne Mollier 
Control: tags -1 + confirmed

Hi László,

László Böszörményi, on 2023-09-06:
> /build/sortmerna-4.3.6/include/readsqueue.hpp:49:12: fatal error:
> concurrentqueue/concurrentqueue.h: No such file or directory
>49 | #  include 
>   |^~~
[…]
> It seems the mentioned header moved to
> /usr/include/concurrentqueue/moodycamel/concurrentqueue.h ; please
> update your package.

Thanks for the report and the hint, I'm looking at this.

Have a nice day,  :)
-- 
  .''`.  Étienne Mollier 
 : :' :  gpg: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/2, please excuse my verbosity
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Bug#1051325: sortmerna: FTBFS: concurrentqueue.h: No such file or directory

2023-09-06 Thread GCS 
Source: sortmerna
Version: 4.3.6-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs

Hi,

During a rebuild of your package for RocksDB transition your package
fails to build on amd64. Relevant lines:
In file included from
/build/sortmerna-4.3.6/src/sortmerna/paralleltraversal.cpp:57:
/build/sortmerna-4.3.6/include/readsqueue.hpp:49:12: fatal error:
concurrentqueue/concurrentqueue.h: No such file or directory
   49 | #  include 
  |^~~
compilation terminated.
make[3]: *** [src/sortmerna/CMakeFiles/smr_objs.dir/build.make:233:
src/sortmerna/CMakeFiles/smr_objs.dir/paralleltraversal.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs
In file included from /build/sortmerna-4.3.6/src/sortmerna/output.cpp:49:
/build/sortmerna-4.3.6/include/readsqueue.hpp:49:12: fatal error:
concurrentqueue/concurrentqueue.h: No such file or directory
   49 | #  include 
  |^~~
compilation terminated.
make[3]: *** [src/sortmerna/CMakeFiles/smr_objs.dir/build.make:205:
src/sortmerna/CMakeFiles/smr_objs.dir/output.cpp.o] Error 1
In file included from /build/sortmerna-4.3.6/src/sortmerna/kseq_load.cpp:39:
/build/sortmerna-4.3.6/include/kseq_load.hpp:63:12: error: 'uint64_t'
has not been declared
   63 |uint64_t number_total_read,
  |^~~~
/build/sortmerna-4.3.6/src/sortmerna/kseq_load.cpp:53:12: error:
'uint64_t' has not been declared
   53 |uint64_t number_total_read,
  |^~~~

It seems the mentioned header moved to
/usr/include/concurrentqueue/moodycamel/concurrentqueue.h ; please
update your package.

Regards,
Laszlo/GCS