Bug#1066837: marked as done (mpi4py: FTBFS: Unable to generate documentation)
Your message dated Wed, 08 May 2024 13:49:10 +
with message-id
and subject line Bug#1066837: fixed in mpi4py 3.1.5-7
has caused the Debian Bug report #1066837,
regarding mpi4py: FTBFS: Unable to generate documentation
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1066837: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066837
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mpi4py
Severity: serious
Tags: patch
User: zixing@canonical.com
Usertags: origin-ubuntu noble ubuntu-patch
Dear Maintainer,
mpi4py failed to build from source after Python 3.12 and Sphinx upgrade.
Please find the patch attached that fixes the Sphinx documentation generation
issue and also a partial fix to the InterSphinx online requirements.
Due to a packaging issue in numpy, the InterSphinx of numpy isn't included
in the package, so linking the documentation from numpy is not possible
at the moment.
* Un-break Sphinx documentation generation by removing PYTHONPATH overrides.
* Add a patch to make Intersphinx read the cross-documentation index
from local filesystem. (LP: #2057848)
Thanks for considering the patch.
-- System Information:
Debian Release: bookworm/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.5.0-25-generic (SMP w/10 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_CA.UTF-8, LC_CTYPE=en_CA.UTF-8 (charmap=UTF-8),
LANGUAGE=en_CA:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
diff -Nru mpi4py-3.1.5/debian/control mpi4py-3.1.5/debian/control
--- mpi4py-3.1.5/debian/control 2024-03-13 12:30:07.0 -0600
+++ mpi4py-3.1.5/debian/control 2024-03-13 15:33:29.0 -0600
@@ -17,7 +16,8 @@
python3-setuptools
Build-Depends-Indep: texinfo, texlive,
latexmk, tex-gyre,
- texlive-latex-extra
+ texlive-latex-extra,
+ python3-doc
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/science-team/mpi4py
Vcs-Git: https://salsa.debian.org/science-team/mpi4py.git
diff -Nru mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
--- mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
1969-12-31 17:00:00.0 -0700
+++ mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
2024-03-13 15:33:29.0 -0600
@@ -0,0 +1,18 @@
+Description: Use local InterSphinx inventory data
+Author: Zixing Liu
+Forwarded: not-needed
+Last-Update: 2024-03-13
+
+Index: mpi4py/docs/source/usrman/conf.py
+===
+--- mpi4py.orig/docs/source/usrman/conf.py
mpi4py/docs/source/usrman/conf.py
+@@ -90,7 +90,7 @@ autosummary_context = {
+ }
+
+ intersphinx_mapping = {
+-'python': ('https://docs.python.org/3/', None),
++'python': ('https://docs.python.org/3/',
('/usr/share/doc/python3/html/objects.inv', None)),
+ 'numpy': ('https://numpy.org/doc/stable/', None),
+ }
+
diff -Nru mpi4py-3.1.5/debian/patches/series mpi4py-3.1.5/debian/patches/series
--- mpi4py-3.1.5/debian/patches/series 2024-02-20 03:49:49.0 -0700
+++ mpi4py-3.1.5/debian/patches/series 2024-03-13 15:29:22.0 -0600
@@ -7,3 +7,4 @@
docs_privacy.patch
io_long_double_i386_2d868d7.patch
skip_testPackUnpackExternal_sparc64.patch
+intersphinx_use_local_inventory.patch
diff -Nru mpi4py-3.1.5/debian/rules mpi4py-3.1.5/debian/rules
--- mpi4py-3.1.5/debian/rules 2024-02-20 03:49:49.0 -0700
+++ mpi4py-3.1.5/debian/rules 2024-03-13 15:28:23.0 -0600
@@ -64,8 +64,7 @@
--build-args "--mpicc=/usr/bin/mpicc$(MPI)
--mpicxx=/usr/bin/mpicxx$(MPI)"
override_dh_auto_build-indep: override_dh_auto_build-arch
- PYTHONPATH=`pybuild --print "{build_dir}"` \
-make -C docs/source/usrman/ html man info latexpdf SPHINXOPTS="-D
today=\"$(BUILD_DATE)\""
+ make -C docs/source/usrman/ html man info latexpdf SPHINXOPTS="-D
today=\"$(BUILD_DATE)\""
override_dh_auto_install:
dh_auto_install
--- End Message ---
--- Begin Message ---
Source: mpi4py
Source-Version: 3.1.5-7
Done: Graham Inggs
We believe that the bug you reported is fixed in the latest version of
mpi4py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to
Bug#1066837: marked as done (mpi4py: FTBFS: Unable to generate documentation)
Your message dated Mon, 06 May 2024 22:49:46 +
with message-id
and subject line Bug#1066837: fixed in mpi4py 3.1.5-6
has caused the Debian Bug report #1066837,
regarding mpi4py: FTBFS: Unable to generate documentation
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1066837: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066837
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mpi4py
Severity: serious
Tags: patch
User: zixing@canonical.com
Usertags: origin-ubuntu noble ubuntu-patch
Dear Maintainer,
mpi4py failed to build from source after Python 3.12 and Sphinx upgrade.
Please find the patch attached that fixes the Sphinx documentation generation
issue and also a partial fix to the InterSphinx online requirements.
Due to a packaging issue in numpy, the InterSphinx of numpy isn't included
in the package, so linking the documentation from numpy is not possible
at the moment.
* Un-break Sphinx documentation generation by removing PYTHONPATH overrides.
* Add a patch to make Intersphinx read the cross-documentation index
from local filesystem. (LP: #2057848)
Thanks for considering the patch.
-- System Information:
Debian Release: bookworm/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.5.0-25-generic (SMP w/10 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_CA.UTF-8, LC_CTYPE=en_CA.UTF-8 (charmap=UTF-8),
LANGUAGE=en_CA:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
diff -Nru mpi4py-3.1.5/debian/control mpi4py-3.1.5/debian/control
--- mpi4py-3.1.5/debian/control 2024-03-13 12:30:07.0 -0600
+++ mpi4py-3.1.5/debian/control 2024-03-13 15:33:29.0 -0600
@@ -17,7 +16,8 @@
python3-setuptools
Build-Depends-Indep: texinfo, texlive,
latexmk, tex-gyre,
- texlive-latex-extra
+ texlive-latex-extra,
+ python3-doc
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/science-team/mpi4py
Vcs-Git: https://salsa.debian.org/science-team/mpi4py.git
diff -Nru mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
--- mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
1969-12-31 17:00:00.0 -0700
+++ mpi4py-3.1.5/debian/patches/intersphinx_use_local_inventory.patch
2024-03-13 15:33:29.0 -0600
@@ -0,0 +1,18 @@
+Description: Use local InterSphinx inventory data
+Author: Zixing Liu
+Forwarded: not-needed
+Last-Update: 2024-03-13
+
+Index: mpi4py/docs/source/usrman/conf.py
+===
+--- mpi4py.orig/docs/source/usrman/conf.py
mpi4py/docs/source/usrman/conf.py
+@@ -90,7 +90,7 @@ autosummary_context = {
+ }
+
+ intersphinx_mapping = {
+-'python': ('https://docs.python.org/3/', None),
++'python': ('https://docs.python.org/3/',
('/usr/share/doc/python3/html/objects.inv', None)),
+ 'numpy': ('https://numpy.org/doc/stable/', None),
+ }
+
diff -Nru mpi4py-3.1.5/debian/patches/series mpi4py-3.1.5/debian/patches/series
--- mpi4py-3.1.5/debian/patches/series 2024-02-20 03:49:49.0 -0700
+++ mpi4py-3.1.5/debian/patches/series 2024-03-13 15:29:22.0 -0600
@@ -7,3 +7,4 @@
docs_privacy.patch
io_long_double_i386_2d868d7.patch
skip_testPackUnpackExternal_sparc64.patch
+intersphinx_use_local_inventory.patch
diff -Nru mpi4py-3.1.5/debian/rules mpi4py-3.1.5/debian/rules
--- mpi4py-3.1.5/debian/rules 2024-02-20 03:49:49.0 -0700
+++ mpi4py-3.1.5/debian/rules 2024-03-13 15:28:23.0 -0600
@@ -64,8 +64,7 @@
--build-args "--mpicc=/usr/bin/mpicc$(MPI)
--mpicxx=/usr/bin/mpicxx$(MPI)"
override_dh_auto_build-indep: override_dh_auto_build-arch
- PYTHONPATH=`pybuild --print "{build_dir}"` \
-make -C docs/source/usrman/ html man info latexpdf SPHINXOPTS="-D
today=\"$(BUILD_DATE)\""
+ make -C docs/source/usrman/ html man info latexpdf SPHINXOPTS="-D
today=\"$(BUILD_DATE)\""
override_dh_auto_install:
dh_auto_install
--- End Message ---
--- Begin Message ---
Source: mpi4py
Source-Version: 3.1.5-6
Done: Drew Parsons
We believe that the bug you reported is fixed in the latest version of
mpi4py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to
