Bug#740309: [Debichem-devel] Bug#740309: libpwiz FTBFS: configure: error: cannot compile a test that uses Boost thread

2014-03-03 Thread Aníbal Monsalve Salazar
On Sun, Mar 02, 2014 at 02:21:58PM +0100, Filippo Rusconi wrote:
 
 Thanks for the report. Same problem here, I'm investigating this one.

The problem is in libboost1.54-dev, see: https://bugs.debian.org/739807

Dejan found the patch to fix libboost1.54 at:

https://svn.boost.org/trac/boost/changeset/84950

We'll have to wait until #739807 is fixed.

Or you could add a lot of #include stdint.h in your Debian source
package, like so:

--- a/autotools/configure   2013-06-19 21:48:48.0 +0100
+++ b/autotools/configure   2014-02-28 07:18:00.846766821 +
@@ -25311,6 +25311,7 @@ _ACEOF
 cat confdefs.h conftest.$ac_ext
 cat conftest.$ac_ext _ACEOF
 /* end confdefs.h.  */
+#include stdint.h
 #include boost/thread.hpp

 int
--- a/pwiz/data/identdata/Serializer_pepXML.cpp 2013-05-30 05:12:05.0 
+1000
+++ b/pwiz/data/identdata/Serializer_pepXML.cpp 2014-02-28 19:18:13.516053984 
+1100
@@ -22,6 +22,7 @@
 ^M
 #define PWIZ_SOURCE^M
 ^M
+#include stdint.h
 #include Serializer_pepXML.hpp^M
 #include pwiz/utility/minimxml/XMLWriter.hpp^M
 #include pwiz/utility/minimxml/SAXParser.hpp^M
--- a/pwiz/data/identdata/Serializer_protXML.cpp2013-05-30 
05:12:05.0 +1000
+++ b/pwiz/data/identdata/Serializer_protXML.cpp2014-02-28 
19:56:03.803043627 +1100
@@ -25,6 +25,7 @@

 #define PWIZ_SOURCE

+#include stdint.h
 #include Serializer_protXML.hpp
 #include pwiz/utility/minimxml/XMLWriter.hpp
 #include pwiz/utility/minimxml/SAXParser.hpp
[...]


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Bug#740309: [Debichem-devel] Bug#740309: libpwiz FTBFS: configure: error: cannot compile a test that uses Boost thread

2014-03-02 Thread Filippo Rusconi

Greetings, Aníbal,

On Fri, Feb 28, 2014 at 06:01:53AM +, Aníbal Monsalve Salazar wrote:

Package: libpwiz
Version: 3.0.4624-8
Severity: serious

libpwiz 3.0.4624-8 FTBFS on amd64 within a clean and updated sid
pbuilder chroot.

The complete pbuilder log is at:

http://people.debian.org/~anibal/libpwiz/libpwiz_3.0.4624-8_amd64.log.bz2

Log extract is below.

checking for boost/thread.hpp... yes
checking for the Boost thread library... configure: error: cannot compile a 
test that uses Boost thread
make: *** [build-arch-stamp] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package


Thanks for the report. Same problem here, I'm investigating this one.

Cheers,
Filippo

--
Filippo Rusconi, PhD - public crypto key C78F687C @ pgp.mit.edu
Researcher at CNRS and Debian Developer lopi...@debian.org
Author of ``massXpert'' at http://www.massxpert.org


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Bug#740309: libpwiz FTBFS: configure: error: cannot compile a test that uses Boost thread

2014-02-27 Thread Aníbal Monsalve Salazar
Package: libpwiz
Version: 3.0.4624-8
Severity: serious

libpwiz 3.0.4624-8 FTBFS on amd64 within a clean and updated sid
pbuilder chroot.

The complete pbuilder log is at:

http://people.debian.org/~anibal/libpwiz/libpwiz_3.0.4624-8_amd64.log.bz2

Log extract is below.

checking for boost/thread.hpp... yes
checking for the Boost thread library... configure: error: cannot compile a 
test that uses Boost thread
make: *** [build-arch-stamp] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package


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