Your message dated Mon, 04 Jul 2016 13:35:14 +0000
with message-id <e1bk41q-0002kp...@franck.debian.org>
and subject line Bug#811830: fixed in proftmb 1.1.12-5
has caused the Debian Bug report #811830,
regarding proftmb: FTBFS with GCC 6: no match for
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
811830: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811830
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: proftmb
Version: 1.1.12-3
Severity: important
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-6 gcc-6-no-match
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
You may be able to find out more about this issue at
https://gcc.gnu.org/gcc-6/changes.html
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -c -o proftmb.o
> proftmb.cpp
> sed -e
> 's|__pkgdatadir__|/usr/share/proftmb|g;s|__datadir__|/usr/share|g;s|__PACKAGE__|proftmb|g;'
> < proftmb_example.txt.raw > proftmb_example.txt
> In file included from HMMOutput.cpp:1:0:
> HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to
> 'char*' [-Wwrite-strings]
> void DisplayArch(ostream&,Par&,uint,char* ="");
> ^
>
> HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to
> 'char*' [-Wwrite-strings]
> void PrintEmit(ostream&,Par&,uint,char* ="");
> ^
>
> In file included from proftmb.cpp:18:0:
> HMMOutput.h:21:46: warning: ISO C++ forbids converting a string constant to
> 'char*' [-Wwrite-strings]
> void DisplayArch(ostream&,Par&,uint,char* ="");
> ^
>
> HMMOutput.h:24:44: warning: ISO C++ forbids converting a string constant to
> 'char*' [-Wwrite-strings]
> void PrintEmit(ostream&,Par&,uint,char* ="");
> ^
>
> proftmb.cpp: In function 'int Run(int, char**)':
> proftmb.cpp:166:47: error: no match for 'operator<<' (operand types are
> 'std::basic_ostream<char>' and 'std::ostringstream {aka
> std::__cxx11::basic_ostringstream<char>}')
> if (!TS) { cerr<<"Couldn't open Output file "<<FileName<<": "<<
> strerror(errno) <<endl; return 1; }
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
-> error
>
> proftmb.cpp:166:47: note: candidate: operator<<(int, int) <built-in>
> proftmb.cpp:166:47: note: no known conversion for argument 2 from
> 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to 'int'
> In file included from /usr/include/c++/6/iostream:39:0,
> from proftmb.cpp:6:
> /usr/include/c++/6/ostream:108:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(std::basic_ostream<_CharT, _Traits>::__ostream_type&
> (*)(std::basic_ostream<_CharT, _Traits>::__ostream_type&)) [with _CharT =
> char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> _Traits>::__ostream_type = std::basic_ostream<char>]
> operator<<(__ostream_type& (*__pf)(__ostream_type&))
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:108:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'std::basic_ostream<char>::__ostream_type&
> (*)(std::basic_ostream<char>::__ostream_type&) {aka std::basic_ostream<char>&
> (*)(std::basic_ostream<char>&)}'
> /usr/include/c++/6/ostream:117:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(std::basic_ostream<_CharT, _Traits>::__ios_type&
> (*)(std::basic_ostream<_CharT, _Traits>::__ios_type&)) [with _CharT = char;
> _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> _Traits>::__ostream_type = std::basic_ostream<char>;
> std::basic_ostream<_CharT, _Traits>::__ios_type = std::basic_ios<char>]
> operator<<(__ios_type& (*__pf)(__ios_type&))
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:117:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'std::basic_ostream<char>::__ios_type&
> (*)(std::basic_ostream<char>::__ios_type&) {aka std::basic_ios<char>&
> (*)(std::basic_ios<char>&)}'
> /usr/include/c++/6/ostream:127:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(std::ios_base& (*)(std::ios_base&)) [with _CharT = char;
> _Traits = std::char_traits<char>; std::basic_ostream<_CharT,
> _Traits>::__ostream_type = std::basic_ostream<char>]
> operator<<(ios_base& (*__pf) (ios_base&))
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:127:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'std::ios_base& (*)(std::ios_base&)'
> /usr/include/c++/6/ostream:166:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(long int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(long __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:166:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'long int'
> /usr/include/c++/6/ostream:170:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(long unsigned int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(unsigned long __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:170:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'long unsigned int'
> /usr/include/c++/6/ostream:174:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(bool) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(bool __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:174:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'bool'
> In file included from /usr/include/c++/6/ostream:638:0,
> from /usr/include/c++/6/iostream:39,
> from proftmb.cpp:6:
> /usr/include/c++/6/bits/ostream.tcc:91:5: note: candidate:
> std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT,
> _Traits>::operator<<(short int) [with _CharT = char; _Traits =
> std::char_traits<char>]
> basic_ostream<_CharT, _Traits>::
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
> /usr/include/c++/6/bits/ostream.tcc:91:5: note: no known conversion for
> argument 1 from 'std::ostringstream {aka
> std::__cxx11::basic_ostringstream<char>}' to 'short int'
> In file included from /usr/include/c++/6/iostream:39:0,
> from proftmb.cpp:6:
> /usr/include/c++/6/ostream:181:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(short unsigned int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(unsigned short __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:181:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'short unsigned int'
> In file included from /usr/include/c++/6/ostream:638:0,
> from /usr/include/c++/6/iostream:39,
> from proftmb.cpp:6:
> /usr/include/c++/6/bits/ostream.tcc:105:5: note: candidate:
> std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT,
> _Traits>::operator<<(int) [with _CharT = char; _Traits =
> std::char_traits<char>]
> basic_ostream<_CharT, _Traits>::
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
> /usr/include/c++/6/bits/ostream.tcc:105:5: note: no known conversion for
> argument 1 from 'std::ostringstream {aka
> std::__cxx11::basic_ostringstream<char>}' to 'int'
> In file included from /usr/include/c++/6/iostream:39:0,
> from proftmb.cpp:6:
> /usr/include/c++/6/ostream:192:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(unsigned int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(unsigned int __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:192:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'unsigned int'
> /usr/include/c++/6/ostream:201:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(long long int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(long long __n)
> ^~~~~~~~
>
> /usr/include/c++/6/ostream:201:7: note: no known conversion for argument 1
> from 'std::ostringstream {aka std::__cxx11::basic_ostringstream<char>}' to
> 'long long int'
> /usr/include/c++/6/ostream:205:7: note: candidate: std::basic_ostream<_CharT,
> _Traits>::__ostream_type& std::basic_ostream<_CharT,
> _Traits>::operator<<(long long unsigned int) [with _CharT = char; _Traits =
> std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type =
> std::basic_ostream<char>]
> operator<<(unsigned long long __n)
> ^~~~~~~~
...
--- End Message ---
--- Begin Message ---
Source: proftmb
Source-Version: 1.1.12-5
We believe that the bug you reported is fixed in the latest version of
proftmb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gert Wollny <gw.foss...@gmail.com> (supplier of updated proftmb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 04 Jul 2016 12:39:37 +0000
Source: proftmb
Binary: proftmb proftmb-dbg
Architecture: source amd64
Version: 1.1.12-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Gert Wollny <gw.foss...@gmail.com>
Description:
proftmb - per-residue prediction of bacterial transmembrane beta barrels
proftmb-dbg - debugging symbols for proftmb
Closes: 811830
Changes:
proftmb (1.1.12-5) unstable; urgency=medium
.
* Team upload.
* d/p/gcc-6: Fix compilation with gcc-6, Closes: #811830
Checksums-Sha1:
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e22d0ca09d69320ddb6261d9b578b531a1f154e8 2024100 proftmb-dbg_1.1.12-5_amd64.deb
34714f8f70beaf7338bf9586f3d84144258449ba 398998 proftmb_1.1.12-5_amd64.deb
Checksums-Sha256:
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proftmb_1.1.12-5_amd64.deb
Files:
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2c36003b83e097bc4a5edcc5160b866d 4288 science optional
proftmb_1.1.12-5.debian.tar.xz
911129e823d0eb0e7e2bd3f96486674b 2024100 debug extra
proftmb-dbg_1.1.12-5_amd64.deb
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proftmb_1.1.12-5_amd64.deb
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