Source: r-bioc-mutationalpatterns Version: 2.0.0-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression
Hi Maintainer Since the upload of 2.0.0-1, r-bioc-mutationalpatterns has been failing its own autopkgtests [1]. This now prevents the migration of r-base. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-mutationalpatterns/testing/amd64/ > test_check("MutationalPatterns") ── 1. Error: (unknown) (@test_mut_matrix_stranded.R#3) ──────────────────────── there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ Backtrace: 1. base::library("TxDb.Hsapiens.UCSC.hg19.knownGene") ── 2. Error: (unknown) (@test_mut_matrix.R#5) ───────────────────────────────── there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’ Backtrace: 1. base::library(ref_genome, character.only = TRUE) ── 3. Error: (unknown) (@test_read_vcfs_as_granges.R#5) ─────────────────────── there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’ Backtrace: 1. base::library(ref_genome, character.only = TRUE) ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ] 1. Error: (unknown) (@test_mut_matrix_stranded.R#3) 2. Error: (unknown) (@test_mut_matrix.R#5) 3. Error: (unknown) (@test_read_vcfs_as_granges.R#5) Error: testthat unit tests failed Execution halted autopkgtest [09:41:10]: test pkg-r-autopkgtest: -----------------------] autopkgtest [09:41:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - pkg-r-autopkgtest FAIL non-zero exit status 1
