Your message dated Wed, 17 Jun 2020 05:19:02 +0000
with message-id <e1jlqtw-000gyh...@fasolo.debian.org>
and subject line Bug#962944: fixed in python-biopython 1.77+dfsg-2
has caused the Debian Bug report #962944,
regarding python3-biopython needs Breaks: cnvkit (<< 0.9.7-1~)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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immediately.)
--
962944: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962944
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: python3-biopython
Version: 1.77+dfsg-1
Severity: serious
Control: block 959587 by -1
https://ci.debian.net/data/autopkgtest/testing/amd64/c/cnvkit/5912015/log.gz
...
Unpacking python3-biopython (1.77+dfsg-1) ...
...
Unpacking cnvkit (0.9.6-3) ...
...
Traceback (most recent call last):
File "/usr/bin/cnvkit", line 8, in <module>
from cnvlib import commands
File "/usr/lib/python3/dist-packages/cnvlib/__init__.py", line 5, in <module>
from .commands import *
File "/usr/lib/python3/dist-packages/cnvlib/commands.py", line 32, in <module>
from . import (access, antitarget, autobin, batch, call, core, coverage,
File "/usr/lib/python3/dist-packages/cnvlib/autobin.py", line 11, in <module>
from . import coverage, samutil
File "/usr/lib/python3/dist-packages/cnvlib/coverage.py", line 15, in <module>
from Bio._py3k import StringIO
ModuleNotFoundError: No module named 'Bio._py3k'
make: *** [Makefile:51: build/reference-picard.cnn] Error 1
--- End Message ---
--- Begin Message ---
Source: python-biopython
Source-Version: 1.77+dfsg-2
Done: Etienne Mollier <etienne.moll...@mailoo.org>
We believe that the bug you reported is fixed in the latest version of
python-biopython, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 962...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Etienne Mollier <etienne.moll...@mailoo.org> (supplier of updated
python-biopython package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 16 Jun 2020 22:12:00 +0200
Source: python-biopython
Architecture: source
Version: 1.77+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Etienne Mollier <etienne.moll...@mailoo.org>
Closes: 962944
Changes:
python-biopython (1.77+dfsg-2) unstable; urgency=medium
.
* Declared python3-biopython breaks: cnvkit (<< 0.9.7-1~) (Closes: #962944)
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