Source: vg
Version: 1.25.0+ds-2
Severity: serious
Hello, looks like elfutils dropped one library used by vg:
# We do not provide a libebl anymore, use libdw instead.
rm -f debian/tmp/usr/include/elfutils/libebl.h
causing now FTBFS in sid:
. ./source_me.sh && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now
-I/usr/include/fastahack -I/<>/vg-1.25.0+ds/include -I.
-I/<>/vg-1.25.0+ds/src -I/<>/vg-1.25.0+ds/src/unittest
-I/<>/vg-1.25.0+ds/src/subcommand
-I/<>/vg-1.25.0+ds/include/dynamic -I/usr/include/cairo
-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include
-I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2
-I/usr/include/libpng16 -I/usr/include/smithwaterman -I/usr/include/vcflib
-I/usr/include/smithwaterman -I/usr/include/fastahack -Wdate-time
-D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -std=c++14 -ggdb -g -MMD -MP -g -O2
-fdebug-prefix-map=/<>/vg-1.25.0+ds=. -fstack-protector-strong
-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
-msse4.1 -fopenmp -o test/build_graph test/build_graph.cpp -lvg
-L/<>/vg-1.25.0+ds/lib /<>/vg-1.25.0+ds/lib/libvgio.a -lz
-lgssw -lssw -lprotobuf -lsublinearLS -ldeflate -lpthread -ljansson -lncurses
-lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lraptor2
-lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw
-lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph
-lfastahack -lsmithwaterman -ldisorder -lvcflib -lsmithwaterman -ldisorder
-lfastahack -lhts -ltabixpp -lcairo -ljansson -latomic -rdynamic -ldw -lelf
-lebl -ldl -llzma -lrocksdb -lbz2 -ljemalloc
/usr/bin/ld: cannot find -lebl
I don't know if this patch is enough to make it build correctly, it is still
building here
diff -Nru vg-1.25.0+ds/debian/changelog vg-1.25.0+ds/debian/changelog
--- vg-1.25.0+ds/debian/changelog 2020-07-14 15:15:28.0 +0200
+++ vg-1.25.0+ds/debian/changelog 2020-07-28 12:11:33.0 +0200
@@ -1,3 +1,9 @@
+vg (1.25.0+ds-2.1) unstable; urgency=medium
+
+ * Fix build by not linking anymore libebl.a (Closes: #-1)
+
+ -- Gianfranco Costamagna Tue, 28 Jul 2020
12:11:33 +0200
+
vg (1.25.0+ds-2) unstable; urgency=medium
* Restrict architectures to build for. Closes: #964039.
diff -Nru vg-1.25.0+ds/debian/patches/use_packaged_elfutils
vg-1.25.0+ds/debian/patches/use_packaged_elfutils
--- vg-1.25.0+ds/debian/patches/use_packaged_elfutils 2020-02-03
13:26:00.0 +0100
+++ vg-1.25.0+ds/debian/patches/use_packaged_elfutils 2020-07-28
12:11:25.0 +0200
@@ -7,7 +7,7 @@
# We want to link against the elfutils libraries
-LD_LIB_FLAGS += -ldwfl -ldw -ldwelf -lelf -lebl
-+LD_LIB_FLAGS += -ldw -lelf -lebl
++LD_LIB_FLAGS += -ldw -lelf
# We get OpenMP the normal way, using whatever the compiler knows about
CXXFLAGS += -fopenmp
