Your message dated Mon, 01 Nov 2021 16:36:10 +0000 with message-id <e1mhai6-000cx5...@fasolo.debian.org> and subject line Bug#997294: fixed in skesa 2.4.0-3 has caused the Debian Bug report #997294, regarding skesa: FTBFS: ld: /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `ZSTD_freeDCtx' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 997294: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997294 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: skesa Version: 2.4.0-2 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > c++ -std=c++11 -fdiagnostics-color=never -o kmercounter kmercounter.o > glb_align.o -L /<<PKGBUILDDIR>>/NGS/vdb_out/lib64 -lncbi-ngs-c++ -lncbi-vdb > -L /<<PKGBUILDDIR>>/NGS/ngs_out/lib64 -lngs-c++ -Wl,-Bstatic > -lboost_program_options -lboost_iostreams -lboost_regex -lboost_timer > -lboost_chrono -lboost_system -Wl,-Bdynamic -lrt -ldl -lm -lpthread -lz > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `ZSTD_freeDCtx' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `ZSTD_decompressDCtx' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `ZSTD_createDCtx' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `ZSTD_isError' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `ZSTD_getErrorName' > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2021/10/23/skesa_2.4.0-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: skesa Source-Version: 2.4.0-3 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of skesa, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 997...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated skesa package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 01 Nov 2021 17:12:21 +0100 Source: skesa Architecture: source Version: 2.4.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 997294 Changes: skesa (2.4.0-3) unstable; urgency=medium . * Versioned Build-Depends: libncbi-vdb-dev (>= 2.11.2+dfsg-2) Closes: #997294 Checksums-Sha1: 4beacfdb3d160a60dbfb3b7d3bfbda261072b601 2103 skesa_2.4.0-3.dsc f338dfe56b00e778788db70b251253ecaa718131 16108 skesa_2.4.0-3.debian.tar.xz 73f7b799e840404209e14eb08e36e690eb8eb555 7843 skesa_2.4.0-3_amd64.buildinfo Checksums-Sha256: c9d2974c43c5df2d8f28ff80df47231ab5ca2b59e33562918cc748b9d4b41929 2103 skesa_2.4.0-3.dsc c5d5a06e27da4e6f63fa3bff68a20f5dd6e910348d8a6a066269247bb7cdc5bb 16108 skesa_2.4.0-3.debian.tar.xz 39b37a936f7c221030255b05fe6ac872a6711351f2509114ae607aacca499870 7843 skesa_2.4.0-3_amd64.buildinfo Files: c7da5f9e102f671e209a3c04497e94e6 2103 science optional skesa_2.4.0-3.dsc 58740793a35571659e8af465d24db3a1 16108 science optional skesa_2.4.0-3.debian.tar.xz d12f178363b3f89ad485f08ea6e40909 7843 science optional skesa_2.4.0-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGAEsYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHSSg/+OqbKidunLk2g/qIYVeXeXsTyTgK6wR9w YFEY/DQKtgX9c+bOStehJKIRSQjo8tvtmcNnndRP4DzJtKYfWApiTFkq0eJbYh0o FqZmx4qfNCyDqjt4jpwnk/MjId2yvIWeC6eEgL+gK8CyU0cj0aFh2G0OI/xn39YA m3HFBNhd7KV4yQ5FVYbeV7GFOhrOyMRcLYCB9xX9U5GUSe/m4AscX8wJK39fPjex ti4WHhUPrp89gzqUCgn2LIt9Ygr1CPS/5MRHaBgvXMlnDMjalySJjR2eXLATd1L0 3bvK85mX7WDnNUViGEHP/ceR2v2qafMbzSlZhYJbUz5n3GdlLSWGP8CmQW7qFmhb QEnixuNxTDz+PtwMalHYk0ypZiOd/dVNhKzvc3Z368iWeW3mDkoseFyDPXvVRk34 phEE2n8Cv14tB+mWv60yfiAtHay6+k5H7xy8rWqCiRNbAgmMQ0oMFT4+bMOHpa9r kCEkDzkX8pCimfVmr0AmFvcE8W3lKc0DQ/gCNzxJ+WjjDbPt83ZqivrCDEG/mrST 14esYC9Yqw+RnFHVy8k/Fk0Wvdtr5jxMRHwYZ0UO5b6DoKsrlu750FyvbwasOBCY 2UKtuOYjA1BOU0vHuqzgeMJ0n1oUw2HEmutzZRZAXnowdAJsx8Ffc++UVLbqTrQ+ je0g583j2wY= =aGao -----END PGP SIGNATURE-----
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