Accepted singularity-container 3.1.1+ds-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 15 May 2019 02:04:21 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 3.1.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (3.1.1+ds-1) unstable; urgency=medium
 .
   * Upstream version 3.1.1+ds
   * drop d/patches/ftbfs_mips
 (was ineffectual previously and no longer applies)
   * Incorporate upstream patch for CVE-2019-11328
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Accepted nvchecker 1.4.3-1 (source) into unstable

[Afif Elghraoui]

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Date: Sun, 31 Mar 2019 01:59:48 -0400
Source: nvchecker
Binary: nvchecker
Architecture: source
Version: 1.4.3-1
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui 
Changed-By: Afif Elghraoui 
Description:
 nvchecker  - new-version checker for software releases
Changes:
 nvchecker (1.4.3-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted nvchecker 1.3-2 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Fri, 08 Feb 2019 21:45:38 -0500
Source: nvchecker
Binary: nvchecker
Architecture: source
Version: 1.3-2
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui 
Changed-By: Afif Elghraoui 
Description:
 nvchecker  - new-version checker for software releases
Closes: 921800
Changes:
 nvchecker (1.3-2) unstable; urgency=medium
 .
   * Disable running the test suite during package build
 due to lack of network access (Closes: #921800)
   * Set up autopkgtest
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Accepted gridengine 8.1.9+dfsg-9 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 05 Feb 2019 01:09:19 -0500
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-9
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 857659 903406
Changes:
 gridengine (8.1.9+dfsg-9) unstable; urgency=medium
 .
   [ Afif Elghraoui ]
   * Do not attempt building JGDI (Reduces severity of #875404)
   * d/watch: update to point to sourceforge
   * Fix FTBFS on armhf due to OpenJDK VM changes.
 Thanks to Adam Barratt for the patch (Closes: #903406)
 .
   [ Andreas Beckmann ]
   * Remove dangling /var/lib/gridengine/jobsbin symlink (Closes: #857659)
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Accepted singularity-container 3.0.3+ds-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Wed, 30 Jan 2019 22:14:04 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 3.0.3+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (3.0.3+ds-1) unstable; urgency=medium
 .
   * New upstream version; code base rewritten in Go
   * New packaging to handle changes to the language and build system
 - Updated d/patches
 - Created a repack script to remove all but certain specific bundled
   dependencies when importing the source tarball.
   * Updated URLs and d/copyright for singularityware -> sylabs ownership
   * Standards-Version 4.3.0
   * Used canonical VCS URLs
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Accepted qperf 0.4.11-2 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sun, 27 Jan 2019 18:17:05 -0500
Source: qperf
Binary: qperf
Architecture: source
Version: 0.4.11-2
Distribution: unstable
Urgency: low
Maintainer: Debian HPC team 
Changed-By: Afif Elghraoui 
Description:
 qperf  - Measure socket and RDMA performance
Changes:
 qperf (0.4.11-2) unstable; urgency=low
 .
   * Correct the uploaders list
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Accepted swiglpk 4.65.0-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 26 Jan 2019 21:15:14 -0500
Source: swiglpk
Binary: python-swiglpk python3-swiglpk
Architecture: source
Version: 4.65.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Afif Elghraoui 
Description:
 python-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
 python3-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
Changes:
 swiglpk (4.65.0-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted optlang 1.4.4-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 26 Jan 2019 21:19:47 -0500
Source: optlang
Binary: python-optlang python3-optlang
Architecture: source
Version: 1.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Afif Elghraoui 
Description:
 python-optlang - sympy based mathematical programming language (Python 2)
 python3-optlang - sympy based mathematical programming language (Python 3)
Changes:
 optlang (1.4.4-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted nvchecker 1.3-1 (source all) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 19 Jan 2019 01:37:25 -0500
Source: nvchecker
Binary: nvchecker
Architecture: source all
Version: 1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Afif Elghraoui 
Changed-By: Afif Elghraoui 
Description:
 nvchecker  - new-version checker for software releases
Closes: 919748
Changes:
 nvchecker (1.3-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #919748)
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Accepted singularity-container 2.6.1-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 14 Jan 2019 21:23:04 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.6.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Closes: 919026
Changes:
 singularity-container (2.6.1-2) unstable; urgency=medium
 .
   * d/patches/reproducible_build: escape dollar signs in Makefile patch
 (Closes: #919026)
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Accepted singularity-container 2.6.1-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 13 Dec 2018 01:47:28 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.6.1-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.6.1-1) unstable; urgency=high
 .
   [ Yaroslav Halchenko ]
   * d/rules
 + DEB_LDFLAGS_MAINT_STRIP=-Wl,-Bsymbolic-functions
   to prevent a weird side-effect on Ubuntu using those LDFLAGS
   and causing static variable to become having multiple "instances".
   Ref: https://github.com/singularityware/singularity/issues/1947
 .
   [ Afif Elghraoui ]
   * New upstream security release fixing CVE-2018-19295
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Accepted pyconfigure 0.2.3-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 15 Sep 2018 16:27:14 -0400
Source: pyconfigure
Binary: pyconfigure
Architecture: source
Version: 0.2.3-2
Distribution: unstable
Urgency: low
Maintainer: Afif Elghraoui 
Changed-By: Afif Elghraoui 
Description:
 pyconfigure - automatic configure script builder for Python software
Changes:
 pyconfigure (0.2.3-2) unstable; urgency=low
 .
   * Bump Standards-Version to 4.2.1
   * Update VCS URLs to point to salsa.debian.org
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Accepted adduser 3.118 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 15 Sep 2018 15:12:39 -0400
Source: adduser
Binary: adduser
Architecture: source
Version: 3.118
Distribution: unstable
Urgency: low
Maintainer: Debian Adduser Developers 
Changed-By: Afif Elghraoui 
Description:
 adduser- add and remove users and groups
Closes: 898034 898769 901031
Changes:
 adduser (3.118) unstable; urgency=low
 .
   * Team upload
 .
   [ Afif Elghraoui ]
   * Remove myself from uploaders
 .
   [ Boyuan Yang ]
   * po: Refresh po files
   * po: Update Simplified Chinese (zh_CN) translation
   * debian/rules: Avoid invoking dpkg-parsechangelog directly
   * debian/control: Bump Standards-Version to 4.2.1.
 .
   [ Helge Kreutzmann ]
   * Update German debconf translation (Closes: #898034)
 .
   [ Frans Spiesschaert ]
   * Update Dutch debconf translation (Closes: #898769)
 .
   [ Julien Patriarca ]
   * Update French debconf translation (Closes: #901031)
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Accepted gridengine 8.1.9+dfsg-4+deb9u2 (source) into proposed-updates->stable-new, proposed-updates

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 09 Jul 2018 23:16:25 -0400
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-4+deb9u2
Distribution: stretch
Urgency: low
Maintainer: Debian Grid Engine Maintainers 

Changed-By: Afif Elghraoui 
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 903406
Changes:
 gridengine (8.1.9+dfsg-4+deb9u2) stretch; urgency=low
 .
   * Fix FTBFS on armhf due to OpenJDK VM changes.
 Thanks to Adam Barratt (Closes: #903406)
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Accepted gridengine 8.1.9+dfsg-4+deb9u1 (source) into proposed-updates->stable-new, proposed-updates

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 05 Jul 2018 00:38:58 -0400
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-4+deb9u1
Distribution: stretch
Urgency: medium
Maintainer: Debian Grid Engine Maintainers 

Changed-By: Afif Elghraoui 
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 892296
Changes:
 gridengine (8.1.9+dfsg-4+deb9u1) stretch; urgency=medium
 .
   * gridengine-qmon:
   - Use correct paths to qmon pixmaps (Closes: #892296)
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Accepted sniffles 1.0.8+ds-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 08 Jul 2018 00:49:22 -0400
Source: sniffles
Binary: sniffles
Architecture: source
Version: 1.0.8+ds-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 

Changed-By: Afif Elghraoui 
Description:
 sniffles   - structural variation caller using third-generation sequencing
Closes: 903192
Changes:
 sniffles (1.0.8+ds-2) unstable; urgency=low
 .
   * Use dh_installman rather than debian/manpages (Closes: #903192)
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Accepted singularity-container 2.5.2-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 04 Jul 2018 15:06:29 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.5.2-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team 
Changed-By: Afif Elghraoui 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.5.2-1) unstable; urgency=high
 .
   * New upstream security and bug-fix release
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Accepted singularity-container 2.5.1-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 03 May 2018 22:12:31 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.5.1-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.5.1-1) unstable; urgency=high
 .
   [ Yaroslav Halchenko ]
   * debian/control
 - Homepage moved to www.sylabs.io
 .
   [ Afif Elghraoui ]
   * New upstream bug-fix release
   * Refresh patches
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Accepted singularity-container 2.5.0-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Mon, 30 Apr 2018 23:04:24 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.5.0-1
Distribution: unstable
Urgency: high
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.5.0-1) unstable; urgency=high
 .
   * New upstream version, including security updates
   * Add build-dependency on libarchive
   * Remove patch merged upstream
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Accepted optlang 1.4.1-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 22 Apr 2018 18:17:41 -0400
Source: optlang
Binary: python-optlang python3-optlang
Architecture: source
Version: 1.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-optlang - sympy based mathematical programming language (Python 2)
 python3-optlang - sympy based mathematical programming language (Python 3)
Changes:
 optlang (1.4.1-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted python-easydev 0.9.35+dfsg-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 22 Apr 2018 17:53:49 -0400
Source: python-easydev
Binary: python-easydev python3-easydev
Architecture: source
Version: 0.9.35+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-easydev - common utilities to ease the development of Python packages 
(Pyth
 python3-easydev - common utilities to ease the development of Python packages 
(Pyth
Closes: 896292 896402
Changes:
 python-easydev (0.9.35+dfsg-2) unstable; urgency=medium
 .
   * Correct ITP bug number in previous changelog entry
   * Add dependencies on python-pkg-resources (Closes: #896292, #896402)
   * Bump Standards-Version to 4.1.3
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Accepted singularity-container 2.4.5-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 24 Mar 2018 16:24:45 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.4.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Closes: 893133
Changes:
 singularity-container (2.4.5-1) unstable; urgency=medium
 .
   [ Yaroslav Halchenko ]
   * Revert 01fd7b1b0ab23b03b424e567342dec180b45e2d7 to bring back
 compatibility with debhelper 9 to ease backports (Closes: #893133)
 .
   [ Afif Elghraoui ]
   * New upstream version
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Accepted sniffles 1.0.8+ds-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sat, 24 Mar 2018 16:20:10 -0400
Source: sniffles
Binary: sniffles
Architecture: source
Version: 1.0.8+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 sniffles   - structural variation caller using third-generation sequencing
Changes:
 sniffles (1.0.8+ds-1) unstable; urgency=medium
 .
   * New upstream version
   * Run tests
   * Refresh patches
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Accepted optlang 1.4.0-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sat, 24 Mar 2018 14:59:06 -0400
Source: optlang
Binary: python-optlang python3-optlang
Architecture: source
Version: 1.4.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-optlang - sympy based mathematical programming language (Python 2)
 python3-optlang - sympy based mathematical programming language (Python 3)
Changes:
 optlang (1.4.0-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted canu 1.7+dfsg-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sat, 17 Mar 2018 18:09:13 -0400
Source: canu
Binary: canu
Architecture: source
Version: 1.7+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 canu   - single molecule sequence assembler for genomes
Changes:
 canu (1.7+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Update handling of mhap bundled copy
   * Refresh patches
   * Use a wrapper script for main program
   * move gnuplot to Depends from Recommends
   * Bump mhap minimum version
   * Bump Standards-Version to 4.1.3
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Accepted mhap 2.1.3+dfsg-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 16 Mar 2018 00:05:16 -0400
Source: mhap
Binary: mhap
Architecture: source
Version: 2.1.3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 mhap   - locality-sensitive hashing to detect long-read overlaps
Changes:
 mhap (2.1.3+dfsg-1) unstable; urgency=medium
 .
   [ Afif Elghraoui ]
   * Bump minimum required libguava-java version
   * New upstream version 2.1.3+dfsg
   * Standards-Version 4.1.3
 .
   [ Steffen Moeller, Andreas Tille ]
   * Added ref to OMICtools
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Accepted gridengine 8.1.9+dfsg-8 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 11 Mar 2018 21:26:20 -0400
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 891373 892296
Changes:
 gridengine (8.1.9+dfsg-8) unstable; urgency=medium
 .
   * Use correct paths to qmon pixmaps (Closes: #892296)
   * Update qmake for glibc 2.27.
 Thanks to Aurelien Jarno (Closes: #891373)
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Accepted smalr 1.1+dfsg-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sun, 11 Mar 2018 19:19:43 -0400
Source: smalr
Binary: smalr
Architecture: source
Version: 1.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 smalr  - interrogation of the methylation status of nucleotide sequencing
Changes:
 smalr (1.1+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Adjust packaging for changes in source organization
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Accepted singularity-container 2.4.4-1 (source) into unstable

[Afif Elghraoui]

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Date: Sat, 10 Mar 2018 16:15:26 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.4.4-1) unstable; urgency=medium
 .
   * New upstream version
   * Refresh patches
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Accepted smalr 1.0.1-1 (source all) into unstable, unstable

[Afif Elghraoui]

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Date: Sun, 25 Feb 2018 20:38:09 -0500
Source: smalr
Binary: smalr
Architecture: source all
Version: 1.0.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 smalr  - interrogation of the methylation status of nucleotide sequencing
Closes: 891485
Changes:
 smalr (1.0.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #891485)
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Accepted trnascan-se 2.0.0-1 (source all amd64) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 24 Feb 2018 22:18:01 -0500
Source: trnascan-se
Binary: trnascan-se trnascan-se-common
Architecture: source all amd64
Version: 2.0.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 trnascan-se - detection of transfer RNA genes in genomic sequence
 trnascan-se-common - detection of transfer RNA genes in genomic sequence 
(common files
Changes:
 trnascan-se (2.0.0-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * debian/upstream/metadata:
 - Added references to registries
 - yamllint cleanliness
   * upstream/metadata RRID->SciCrunch
 .
   [ Afif Elghraoui ]
   * debian/watch: update to new URL
   * New upstream version
   * Standards-Version 4.1.3
   * debhelper compat 11
   * d/rules: clean up and remove dh_installchangelogs
   * Overhaul packaging for new build system
   * d/copyright: license change (GPL 2+ -> 3+); updated copyright years
   * install examples
   * Add dependency on infernal
   * Update autopkgtest
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Accepted nanopolish 0.9.0-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sat, 17 Feb 2018 22:02:10 -0500
Source: nanopolish
Binary: nanopolish
Architecture: source
Version: 0.9.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 nanopolish - consensus caller for nanopore sequencing data
Changes:
 nanopolish (0.9.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Refresh patches
   * Bump upstream copyright year
   * Bump minimum required fast5 version
   * Include upstream patch to fix HDF5 errors appearing in autopkgtest
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Accepted fast5 0.6.5-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 17 Feb 2018 20:43:22 -0500
Source: fast5
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Architecture: source
Version: 0.6.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 fast5  - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Changes:
 fast5 (0.6.5-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version 4.1.3
   * Debhelper compat 11
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Accepted assemblytics 0~20170131+ds-2 (source) into unstable

[Afif Elghraoui]

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Date: Sat, 17 Feb 2018 17:58:15 -0500
Source: assemblytics
Binary: assemblytics
Architecture: source
Version: 0~20170131+ds-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 assemblytics - detect and analyze structural variants from a genome assembly
Changes:
 assemblytics (0~20170131+ds-2) unstable; urgency=low
 .
   * Add d/upstream/metadata
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Accepted singularity-container 2.4.2-4 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sat, 17 Feb 2018 17:14:21 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.4.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Closes: 887192
Changes:
 singularity-container (2.4.2-4) unstable; urgency=low
 .
   * Standards-Version 4.1.3
   * debhelper compat 11
   * Change squashfs tools to Depends from Recommends
   * Recommend e2fsprogs (Closes: #887192)
   * d/rules: add comment explaining why test suite can't be run
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Accepted assemblytics 0~20170131+ds-1 (source all) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 12 Feb 2018 00:55:10 -0500
Source: assemblytics
Binary: assemblytics
Architecture: source all
Version: 0~20170131+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 assemblytics - detect and analyze structural variants from a genome assembly
Closes: 890220
Changes:
 assemblytics (0~20170131+ds-1) unstable; urgency=medium
 .
   * Initial release (Closes: #890220)
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Accepted mummer 3.23+dfsg-3 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sun, 11 Feb 2018 18:02:05 -0500
Source: mummer
Binary: mummer mummer-doc
Architecture: source
Version: 3.23+dfsg-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 mummer - Efficient sequence alignment of full genomes
 mummer-doc - Documentation for MUMmer
Changes:
 mummer (3.23+dfsg-3) unstable; urgency=low
 .
   * Team upload
 .
   [ Fabian Klötzl ]
   * improve performance of delta2maf
 .
   [ Steffen Moeller ]
   * Corrected EDAM annotation file
 .
   [ Afif Elghraoui ]
   * d/watch: point to new upstream repository at GitHub
 .
   [ Andreas Tille ]
   * Update d/copyright
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Accepted swiglpk 1.4.4-2 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Tue, 06 Feb 2018 18:16:58 -0500
Source: swiglpk
Binary: python-swiglpk python3-swiglpk
Architecture: source
Version: 1.4.4-2
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
 python3-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
Changes:
 swiglpk (1.4.4-2) unstable; urgency=low
 .
   * Install examples
   * Add debian/watch
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Accepted optlang 1.3.0-1 (source all) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 19:27:31 -0500
Source: optlang
Binary: python-optlang python3-optlang
Architecture: source all
Version: 1.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-optlang - sympy based mathematical programming language (Python 2)
 python3-optlang - sympy based mathematical programming language (Python 3)
Closes: 889611
Changes:
 optlang (1.3.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #889611)
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Accepted swiglpk 1.4.4-1 (source amd64) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 18:47:18 -0500
Source: swiglpk
Binary: python-swiglpk python3-swiglpk
Architecture: source amd64
Version: 1.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
 python3-swiglpk - Plain Python bindings for the GNU Linear Programming Kit 
(Python
Closes: 889613
Changes:
 swiglpk (1.4.4-1) unstable; urgency=medium
 .
   * Initial release (Closes: #889613)
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Accepted singularity-container 2.4.2-3 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 20:04:43 -0500
Source: singularity-container
Binary: singularity-container
Architecture: source
Version: 2.4.2-3
Distribution: unstable
Urgency: low
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.4.2-3) unstable; urgency=low
 .
   * Add Recommends: squashfs-tools
   * lintian overrides: update suid binary locations
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Accepted nanopolish 0.8.5-2 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 19:38:40 -0500
Source: nanopolish
Binary: nanopolish
Architecture: source
Version: 0.8.5-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 nanopolish - consensus caller for nanopore sequencing data
Changes:
 nanopolish (0.8.5-2) unstable; urgency=low
 .
   * Remove dependency on nonexistent package sse-support [i386]
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Accepted nanopolish 0.8.5-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 16:17:01 -0500
Source: nanopolish
Binary: nanopolish
Architecture: source
Version: 0.8.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 nanopolish - consensus caller for nanopore sequencing data
Changes:
 nanopolish (0.8.5-1) unstable; urgency=medium
 .
   * New upstream version
   * d/control:
 + Add sse-support to Build-Depends for i386
 + Remove explicit declaration of x32
   * Bump Standards-Version to 4.1.3
   * Drop patches applied upstream
   * Drop useless patch
   * Bump copyright years
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nanopolish_0.8.5-1_source.buildinfo

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Accepted hinge 0.5.0-3 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 14:07:59 -0500
Source: hinge
Binary: hinge
Architecture: source
Version: 0.5.0-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 hinge  - long read genome assembler based on hinging
Changes:
 hinge (0.5.0-3) unstable; urgency=low
 .
   * Mark spdlog patch as forwarded upstream
   * d/control: copy Depends into Build-Depends
 to allow migration to Testing
   * Bump Standards-Version to 4.1.3
   * Bump copyright year
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Accepted dascrubber 0~20180108-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 13:54:09 -0500
Source: dascrubber
Binary: dascrubber
Architecture: source
Version: 0~20180108-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Changes:
 dascrubber (0~20180108-1) unstable; urgency=medium
 .
   * New upstream snapshot (git 3491b14)
   * Bump copyright years
   * Bump Standards-Version to 4.1.3
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dascrubber_0~20180108-1.debian.tar.xz
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Accepted dazzdb 1.0+20180115-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 13:43:31 -0500
Source: dazzdb
Binary: dazzdb
Architecture: source
Version: 1.0+20180115-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dazzdb - manage nucleotide sequencing read data
Changes:
 dazzdb (1.0+20180115-1) unstable; urgency=medium
 .
   * New upstream snapshot (git 7104852)
   * Bump copyright years
   * Bump Standards-Version to 4.1.3
   * Update and refresh patches
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dazzdb_1.0+20180115-1_source.buildinfo

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Accepted daligner 1.0+20180108-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 05:26:26 -0500
Source: daligner
Binary: daligner
Architecture: source
Version: 1.0+20180108-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 daligner   - local alignment discovery between long nucleotide sequencing read
Changes:
 daligner (1.0+20180108-1) unstable; urgency=medium
 .
   * New upstream snapshot (git 233274a)
   * Bump Standards-Version to 4.1.3
   * Bump copyright years
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Accepted sprai 0.9.9.23+dfsg-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Feb 2018 05:10:53 -0500
Source: sprai
Binary: sprai
Architecture: source
Version: 0.9.9.23+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 sprai  - single-pass sequencing read accuracy improver
Changes:
 sprai (0.9.9.23+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Bump Standards-Version to 4.1.3
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Accepted gridengine 8.1.9+dfsg-7 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 27 Dec 2017 01:58:20 -0500
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-7
Distribution: unstable
Urgency: low
Maintainer: Debian HPC Team <debian-...@lists.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Changes:
 gridengine (8.1.9+dfsg-7) unstable; urgency=low
 .
   * Maintain under the Debian HPC team
   * Move VCS repository to salsa.debian.org.
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Accepted falcon 1.8.8-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sat, 16 Dec 2017 02:57:27 -0500
Source: falcon
Binary: falcon
Architecture: source
Version: 1.8.8-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 falcon - diploid-aware genome assembly of single-molecule sequencing reads
Closes: 864376 864378
Changes:
 falcon (1.8.8-1) unstable; urgency=medium
 .
   [ Afif Elghraoui ]
   * New upstream version
   * Update and refresh patches
   * Update unit test invocation
   * d/get-orig-source: clean-ups and corrections
   * d/control: Exclude x32 architecture (Closes: #864378)
   * d/tests/control: s/ADTTMP/AUTOPKGTEST_TMP/
   * Re-enable integration tests (Closes: #864376)
   * Update copyright years
   * Bump Standards-Version to 4.1.2
 .
   [ Steffen Moeller ]
   * debian/upstream/metadata:
 - yamllint cleanliness
 - Added references to registries.
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Accepted fast5 0.6.4-2 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sat, 16 Dec 2017 00:13:32 -0500
Source: fast5
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Architecture: source
Version: 0.6.4-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 fast5  - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Changes:
 fast5 (0.6.4-2) unstable; urgency=low
 .
   * Allow stderr output in autpkgtests to ignore notes
 emitted by GCC7 on armhf.
 Thanks to Graham Inggs
   * Bump Standards-Version to 4.1.2
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Accepted hinge 0.5.0-1 (source amd64) into unstable, unstable

[Afif Elghraoui]

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Format: 1.8
Date: Fri, 20 Oct 2017 00:27:38 -0400
Source: hinge
Binary: hinge
Architecture: source amd64
Version: 0.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 hinge  - long read genome assembler based on hinging
Closes: 878962
Changes:
 hinge (0.5.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #878962)
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Accepted sniffles 1.0.7+ds-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Thu, 23 Nov 2017 01:36:25 -0500
Source: sniffles
Binary: sniffles
Architecture: source
Version: 1.0.7+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 sniffles   - structural variation caller using third-generation sequencing
Changes:
 sniffles (1.0.7+ds-1) unstable; urgency=medium
 .
   * New upstream version
   * Update/refresh patches
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Accepted gridengine 8.1.9+dfsg-6 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 19 Nov 2017 00:18:39 -0500
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Grid Engine Maintainers 
<pkg-gridengine-de...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 827076
Changes:
 gridengine (8.1.9+dfsg-6) unstable; urgency=medium
 .
   * Fix FTBFS with openssl 1.1
 Thanks to Mark Hymers for the patches (Closes: #827076)
   * Bump Standards-Version to 4.1.1
   * Drop explicit build-dependency on autotools-dev
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Accepted nanopolish 0.8.4-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sat, 11 Nov 2017 00:45:23 -0500
Source: nanopolish
Binary: nanopolish
Architecture: source
Version: 0.8.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 nanopolish - consensus caller for nanopore sequencing data
Changes:
 nanopolish (0.8.4-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * upstream/metadata RRID->SciCrunch
 .
   [ Afif Elghraoui ]
   * New upstream version
   * Bump fast5 minimum version
   * Update and refine patch stack
   * Improve handling of external dependencies and build flags
   * d/rules
 + Remove redundant LDFLAGS setting
 + Don't override upstream optimization flags with default -O2
   * Bump Standards-Version to 4.1.1
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Accepted fast5 0.6.4-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Fri, 10 Nov 2017 15:56:45 -0500
Source: fast5
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Architecture: source
Version: 0.6.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 fast5  - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Changes:
 fast5 (0.6.4-1) unstable; urgency=medium
 .
   * New upstream version
   * Bump Standards-Version to 4.1.1
   * Bump copyright years
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Accepted sniffles 1.0.6+ds-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Fri, 10 Nov 2017 01:34:05 -0500
Source: sniffles
Binary: sniffles
Architecture: source
Version: 1.0.6+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 sniffles   - structural variation caller using third-generation sequencing
Changes:
 sniffles (1.0.6+ds-1) unstable; urgency=medium
 .
   * New upstream version
   * Install upstream README
   * d/watch: remove unnecessary script invocations
   * Add d/upstream/metadata with preprint reference
   * Bump Standards-Version to 4.1.1
   * Add support for the nodoc build profile
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Accepted pbseqlib 0~20161219-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 09 Nov 2017 22:48:55 -0500
Source: pbseqlib
Binary: libpbseq libpbseq-dev libpbdata-dev libpbdata libpbihdf-dev libpbihdf 
libblasr-dev libblasr
Architecture: source
Version: 0~20161219-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 libblasr   - tools for aligning PacBio reads to target sequences
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libpbdata  - tools for handling PacBio sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf  - tools for handling PacBio hdf5 files
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Closes: 880805
Changes:
 pbseqlib (0~20161219-2) unstable; urgency=medium
 .
   * Add support for HDF5 1.10.1
 Thanks to Gilles Filippini for the patches (Closes: #880805)
   * Bump Standards-Version to 4.1.1
   * Update copyright year
   * Handle nocheck build profile
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Accepted python-colormap 1.0.1-1 (source all) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 18 Oct 2017 21:12:38 -0400
Source: python-colormap
Binary: python-colormap python3-colormap
Architecture: source all
Version: 1.0.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-colormap - ease manipulation of matplotlib colormaps and color codecs 
(Pytho
 python3-colormap - ease manipulation of matplotlib colormaps and color codecs 
(Pytho
Closes: 878963
Changes:
 python-colormap (1.0.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #878963)
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Accepted dazzdb 1.0+20171014-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Fri, 20 Oct 2017 00:00:08 -0400
Source: dazzdb
Binary: dazzdb
Architecture: source
Version: 1.0+20171014-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dazzdb - manage nucleotide sequencing read data
Changes:
 dazzdb (1.0+20171014-1) unstable; urgency=medium
 .
   * New upstream snapshot (git 8ab7daf)
   * Update and refresh patches
   * Bump Standards-Version to 4.1.1
   * Bump copyright years
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Accepted dascrubber 0~20171015-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 20 Oct 2017 00:06:04 -0400
Source: dascrubber
Binary: dascrubber
Architecture: source
Version: 0~20171015-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Changes:
 dascrubber (0~20171015-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * Created debian/upstream/metadata with refs to
 registries
 .
   [ Afif Elghraoui ]
   * New upstream snapshot (git 2896d22)
   * Update name of README file
   * Update and refresh patches
   * Use default hardening
   * Bump Standards-Version to 4.1.1
   * Bump copyright years
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Accepted daligner 1.0+20171010-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 19 Oct 2017 23:42:51 -0400
Source: daligner
Binary: daligner
Architecture: source
Version: 1.0+20171010-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 daligner   - local alignment discovery between long nucleotide sequencing read
Changes:
 daligner (1.0+20171010-2) unstable; urgency=low
 .
   [ Steffen Moeller ]
   * [debian/upstream/metadata] Reference to OMICtools added.
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Accepted daligner 1.0+20171010-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 19 Oct 2017 23:18:52 -0400
Source: daligner
Binary: daligner
Architecture: source
Version: 1.0+20171010-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 daligner   - local alignment discovery between long nucleotide sequencing read
Changes:
 daligner (1.0+20171010-1) unstable; urgency=medium
 .
   * New upstream snapshot (git b966696)
   * Bump Standards Version to 4.1.1
   * Bump copyright years
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Accepted python-easydev 0.9.35+dfsg-1 (source all) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 18 Oct 2017 01:56:51 -0400
Source: python-easydev
Binary: python-easydev python3-easydev
Architecture: source all
Version: 0.9.35+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-easydev - common utilities to ease the development of Python packages 
(Pyth
 python3-easydev - common utilities to ease the development of Python packages 
(Pyth
Closes: 878963
Changes:
 python-easydev (0.9.35+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #878963)
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Accepted fast5 0.6.3-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 17 Oct 2017 20:03:31 -0400
Source: fast5
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Architecture: source
Version: 0.6.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 fast5  - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Closes: 876283
Changes:
 fast5 (0.6.3-1) unstable; urgency=medium
 .
   * New upstream version
   * Vastly simplified packaging after upstream patches accepted
   * Don't hard-code hdf5-serial
   * Fix source build in autopkgtest (Closes: #876283)
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Accepted fast5 0.6.2-7 (source all amd64) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 01 Oct 2017 11:55:15 -0400
Source: fast5
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Architecture: source all amd64
Version: 0.6.2-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 fast5  - utilities for manipulating Oxford Nanopore Fast5 files
 libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
 python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Changes:
 fast5 (0.6.2-7) unstable; urgency=medium
 .
   * Reorganize executables package
 - replace python{,3}-fast5-bin with fast5
 - require executables package version to match
   library version
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Accepted bcftools 1.5-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 12 Oct 2017 00:14:38 -0400
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.5-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 bcftools   - genomic variant calling and manipulation of VCF/BCF files
Closes: 868958
Changes:
 bcftools (1.5-2) unstable; urgency=low
 .
   * Incorporate lost changes from 1.4.1-3 (Closes: #868958)
   * Update Standards-Version to 4.1.1
   * d/control: use build profiles to mark build-dependencies
 needed only for running tests
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Accepted python-pysam 0.12.0.1+ds-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 06 Oct 2017 23:38:45 -0400
Source: python-pysam
Binary: python-pysam python3-pysam python-pysam-tests
Architecture: source
Version: 0.12.0.1+ds-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-pysam - interface for the SAM/BAM sequence alignment and mapping format 
(
 python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping 
format (
 python3-pysam - interface for the SAM/BAM sequence alignment and mapping 
format (
Changes:
 python-pysam (0.12.0.1+ds-2) unstable; urgency=low
 .
   * Update autopkgtest for new test suite driver
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Accepted bcftools 1.5-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 01 Oct 2017 12:39:31 -0400
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 bcftools   - genomic variant calling and manipulation of VCF/BCF files
Changes:
 bcftools (1.5-1) unstable; urgency=medium
 .
   * migrate to Unstable
 .
 bcftools (1.5-1~exp1) experimental; urgency=medium
 .
   [ Afif Elghraoui ]
   * Update packaging for new build system
 .
   [ Andreas Tille ]
   * New upstream version
   * Bump version in Build-Depends libhts-dev from 1.3.1 to 1.5
   * Standards-Version: 4.0.0 (no changes needed)
 .
   [Steffen Moeller ]
   * [debian/upstream/metadata] Added registry references for
 OMICtools, RRID, bio.tools
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Accepted python-pysam 0.12.0.1+ds-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sun, 01 Oct 2017 12:30:30 -0400
Source: python-pysam
Binary: python-pysam python3-pysam python-pysam-tests
Architecture: source
Version: 0.12.0.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-pysam - interface for the SAM/BAM sequence alignment and mapping format 
(
 python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping 
format (
 python3-pysam - interface for the SAM/BAM sequence alignment and mapping 
format (
Closes: 834856 871083
Changes:
 python-pysam (0.12.0.1+ds-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Drop patch applied upstream
   * Standards-Version: 4.1.0 (no changes needed)
   * Apply upstream patch to fix test suite
   * Use pytest instead of nosetest
 .
   [ Afif Elghraoui ]
   * New upstream version
 Closes: #871083, #834856
   * Bump htslib suite minimum versions
   * Use Build Profiles to mark build-dependencies needed only for tests
   * Temporarily skip a failing test (reported upstream)
 .
   [ Steffen Moeller ]
   * created debian/upstream/metadata: references to registries
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Accepted adduser 3.116 (source) into unstable

[Afif Elghraoui]

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Date: Sat, 12 Aug 2017 16:05:34 -0400
Source: adduser
Binary: adduser
Architecture: source
Version: 3.116
Distribution: unstable
Urgency: medium
Maintainer: Debian Adduser Developers <adduser-de...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 adduser- add and remove users and groups
Closes: 708073 759740 763055 840982 845791
Changes:
 adduser (3.116) unstable; urgency=medium
 .
   * Advise installation of 'perl' rather than 'perl-modules'
 (Closes: #840982)
   * Improve distinction between informational and essential messages
 (Closes: #763055)
   * Improve message accompanying error code for creating system user
 (Closes: #708073, #759740)
   * testsuite: add current directory to Perl module search path
   * Use /usr/sbin/nologin instead of /bin/false for default system shell
 (Closes: #845791)
   * Bump Standards-Version to 4.0.1
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Accepted python-avro 1.8.2+dfsg-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Fri, 11 Aug 2017 14:50:50 -0400
Source: python-avro
Binary: python-avro python3-avro
Architecture: source
Version: 1.8.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-avro - Apache Avro serialization system — Python 2 library
 python3-avro - Apache Avro serialization system — Python 3 library
Changes:
 python-avro (1.8.2+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
   * Bump Standards-Version.
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Accepted gridengine 8.1.9+dfsg-5 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 11 Aug 2017 15:29:37 -0400
Source: gridengine
Binary: gridengine-common gridengine-client gridengine-qmon gridengine-master 
gridengine-exec gridengine-dev gridengine-drmaa1.0 libdrmaa1.0-java 
libdrmaa1.0-java-doc gridengine-drmaa-dev libdrmaa1.0-ruby
Architecture: source
Version: 8.1.9+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Grid Engine Maintainers 
<pkg-gridengine-de...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 gridengine-client - Utilities for Grid Engine queue management
 gridengine-common - Distributed resource management - common files
 gridengine-dev - Distributed resource management - development files
 gridengine-drmaa-dev - Distributed resource management Application API library 
- develop
 gridengine-drmaa1.0 - Distributed resource management Application API library
 gridengine-exec - Distributed resource management - Execution Server
 gridengine-master - Distributed resource management - Master Server
 gridengine-qmon - Graphical utilities for Grid Engine queue management
 libdrmaa1.0-java - Distributed resource management Application API library - 
Java bi
 libdrmaa1.0-java-doc - Distributed resource management Application API library 
- Java bi
 libdrmaa1.0-ruby - Distributed resource management Application API library - 
Ruby bi
Closes: 554036 856671 870637
Changes:
 gridengine (8.1.9+dfsg-5) unstable; urgency=medium
 .
   * Wrap qstatus and qsched commands (Closes: #870637)
   * Remove unused config files from /etc/gridengine (Closes: #554036)
   * d/rules: minor simplification
   * Set SGE_ARCH variable (Closes: #856671)
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Accepted bcftools 1.5-1~exp1 (source) into experimental

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 08 Aug 2017 12:35:44 -0400
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.5-1~exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 bcftools   - genomic variant calling and manipulation of VCF/BCF files
Changes:
 bcftools (1.5-1~exp1) experimental; urgency=medium
 .
   [ Afif Elghraoui ]
   * Update packaging for new build system
 .
   [ Andreas Tille ]
   * New upstream version
   * Bump version in Build-Depends libhts-dev from 1.3.1 to 1.5
   * Standards-Version: 4.0.0 (no changes needed)
 .
   [Steffen Moeller ]
   * [debian/upstream/metadata] Added registry references for
 OMICtools, RRID, bio.tools
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Accepted bcftools 1.5-1~exp1 (source) into experimental

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 08 Aug 2017 12:35:44 -0400
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.5-1~exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 bcftools   - genomic variant calling and manipulation of VCF/BCF files
Changes:
 bcftools (1.5-1~exp1) experimental; urgency=medium
 .
   [ Afif Elghraoui ]
   * Update packaging for new build system
 .
   [ Andreas Tille ]
   * New upstream version
   * Bump version in Build-Depends libhts-dev from 1.3.1 to 1.5
   * Standards-Version: 4.0.0 (no changes needed)
 .
   [Steffen Moeller ]
   * [debian/upstream/metadata] Added registry references for
 OMICtools, RRID, bio.tools
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Accepted canu 1.5+dfsg-1 (source) into unstable

[Afif Elghraoui]

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Version: 1.5+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 canu   - single molecule sequence assembler for genomes
Changes:
 canu (1.5+dfsg-1) unstable; urgency=medium
 .
   * New upstream release
   * d/copyright: Drop Files-Excluded entries for files removed upstream
   * Refresh and update patches
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Accepted trnascan-se 1.3.1-1 (source all amd64) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Dec 2016 23:35:18 -0800
Source: trnascan-se
Binary: trnascan-se trnascan-se-common
Architecture: source all amd64
Version: 1.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 trnascan-se - detection of transfer RNA genes in genomic sequence
 trnascan-se-common - detection of transfer RNA genes in genomic sequence 
(common files
Closes: 803542
Changes:
 trnascan-se (1.3.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #803542)
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Accepted canu 1.3+dfsg-1 (source amd64) into unstable, unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 09 Oct 2016 21:53:18 -0700
Source: canu
Binary: canu
Architecture: source amd64
Version: 1.3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 canu   - single molecule sequence assembler for genomes
Closes: 395843
Changes:
 canu (1.3+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #395843)
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Accepted python-pysam 0.10.0+ds-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 26 Jan 2017 04:36:11 -0800
Source: python-pysam
Binary: python-pysam python3-pysam python-pysam-tests
Architecture: source
Version: 0.10.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-pysam - interface for the SAM/BAM sequence alignment and mapping format 
(
 python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping 
format (
 python3-pysam - interface for the SAM/BAM sequence alignment and mapping 
format (
Changes:
 python-pysam (0.10.0+ds-1) unstable; urgency=medium
 .
   [ Afif Elghraoui ]
   * New upstream release
   * Update patches
 .
   [ Andreas Tille ]
   * d/rules: Remove redundant get-orig-source target
   * hardening=+all
   * Fix lintian overrides
 .
   [ Afif Elghraoui ]
   * Do not use internal htslib
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Accepted python-pbcore 1.2.11+dfsg-1 (source) into unstable

[Afif Elghraoui]

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Date: Thu, 26 Jan 2017 00:23:02 -0800
Source: python-pbcore
Binary: python-pbcore python-pbcore-doc
Architecture: source
Version: 1.2.11+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-pbcore - Python library for processing PacBio data files
 python-pbcore-doc - Python library for processing PacBio data files 
(documentation)
Changes:
 python-pbcore (1.2.11+dfsg-1) unstable; urgency=medium
 .
   * New upstream release (git 32b6883 from 2016-09-19)
   * Update patches
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Accepted python-cobra 0.5.9-1 (source) into unstable

[Afif Elghraoui]

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Date: Wed, 25 Jan 2017 01:22:48 -0800
Source: python-cobra
Binary: python-cobra python3-cobra python-cobra-data
Architecture: source
Version: 0.5.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-cobra - constraint-based modeling of biological networks (Python 2)
 python-cobra-data - constraint-based modeling of biological networks (data)
 python3-cobra - constraint-based modeling of biological networks (Python 3)
Changes:
 python-cobra (0.5.9-1) unstable; urgency=medium
 .
   * New upstream release
   * Refresh patch
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Accepted falcon 1.8.6-1 (source) into unstable

[Afif Elghraoui]

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Date: Mon, 23 Jan 2017 22:56:36 -0800
Source: falcon
Binary: falcon
Architecture: source
Version: 1.8.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 falcon - diploid-aware genome assembly of single-molecule sequencing reads
Changes:
 falcon (1.8.6-1) unstable; urgency=medium
 .
   * New upstream release
   * Remove Files-Excluded line
   * New dependencies: rsync, time
   * Update patches
   * Remove copyright statements for removed sources
   * autopkgtest:
 - work around failure caused by trying to use /tmp while
   running in /tmp
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Accepted python-avro 1.8.2~rc1+dfsg-1 (source) into experimental

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Mon, 23 Jan 2017 02:55:15 -0800
Source: python-avro
Binary: python-avro python3-avro
Architecture: source
Version: 1.8.2~rc1+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-avro - Apache Avro serialization system — Python 2 library
 python3-avro - Apache Avro serialization system — Python 3 library
Changes:
 python-avro (1.8.2~rc1+dfsg-1) experimental; urgency=medium
 .
   * New upstream release candidate
   * Refresh patch
   * Bump copyright years
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Accepted python-avro 1.8.2~rc1+dfsg-1 (source) into experimental

[Afif Elghraoui]

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Hash: SHA256

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Date: Mon, 23 Jan 2017 02:55:15 -0800
Source: python-avro
Binary: python-avro python3-avro
Architecture: source
Version: 1.8.2~rc1+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 python-avro - Apache Avro serialization system — Python 2 library
 python3-avro - Apache Avro serialization system — Python 3 library
Changes:
 python-avro (1.8.2~rc1+dfsg-1) experimental; urgency=medium
 .
   * New upstream release candidate
   * Refresh patch
   * Bump copyright years
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Accepted pbbam 0.7.4+ds-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Sat, 21 Jan 2017 23:48:21 -0800
Source: pbbam
Binary: pbbamtools libpbbam libpbbam-dev
Architecture: source
Version: 0.7.4+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 libpbbam   - Pacific Biosciences binary alignment/map (BAM) library
 libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers)
 pbbamtools - processing Pacific Biosciences binary alignment/map files
Changes:
 pbbam (0.7.4+ds-1) unstable; urgency=medium
 .
   * New upstream release snapshot
 - Exclude dependency convenience copy
 - Update patches
 - Update running of tests at build-time
 - Update .install files
 - Update autopkgtest commands
   * Use debhelper compat 10
   * libpbbam-dev: depend on libssl-dev
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Accepted pbgenomicconsensus 2.1.0-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 21 Jan 2017 16:15:53 -0800
Source: pbgenomicconsensus
Binary: pbgenomicconsensus python-pbgenomicconsensus
Architecture: source
Version: 2.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 pbgenomicconsensus - Pacific Biosciences variant and consensus caller
 python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller 
(Python 2)
Changes:
 pbgenomicconsensus (2.1.0-1) unstable; urgency=medium
 .
   * New upstream release snapshot
 (git 5893b16, 2016-07-19)
   * Update manpage for new release
   * Adapt test suite for missing pbtestdata
   * autopkgtest: make sure to test installed version of the package
   * Add python-consensuscore2 to Recommends
   * Add lintian override for autopkgtest dependency list
   * Install FAQ into docs rather than as a manpage
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Accepted sprai 0.9.9.22+dfsg-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Fri, 20 Jan 2017 00:44:23 -0800
Source: sprai
Binary: sprai
Architecture: source
Version: 0.9.9.22+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 sprai  - single-pass sequencing read accuracy improver
Changes:
 sprai (0.9.9.22+dfsg-1) unstable; urgency=low
 .
   * Add example data
   * Bump copyright year
   * New upstream release
   * Update upstream contact email address
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Accepted ori 0.8.1+ds1-3 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 19 Jan 2017 03:19:48 -0800
Source: ori
Binary: ori
Architecture: source
Version: 0.8.1+ds1-3
Distribution: unstable
Urgency: low
Maintainer: Afif Elghraoui <a...@debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 ori- peer-to-peer distributed file system
Closes: 851004
Changes:
 ori (0.8.1+ds1-3) unstable; urgency=low
 .
   * d/control, d/rules: clean-ups and readability improvements
   * Use debhelper compat 10
   * Build-depend on zlib (Closes: #851004)
   * Bump copyright year
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Accepted dazzdb 1.0+20161112-2 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Wed, 18 Jan 2017 23:45:14 -0800
Source: dazzdb
Binary: dazzdb
Architecture: source
Version: 1.0+20161112-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dazzdb - manage nucleotide sequencing read data
Changes:
 dazzdb (1.0+20161112-2) unstable; urgency=medium
 .
   * compiler-flags.patch: slight corrections for DBwipe
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Accepted dazzdb 1.0+20161112-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Wed, 18 Jan 2017 22:57:17 -0800
Source: dazzdb
Binary: dazzdb
Architecture: source
Version: 1.0+20161112-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dazzdb - manage nucleotide sequencing read data
Changes:
 dazzdb (1.0+20161112-1) unstable; urgency=medium
 .
   * New upstream snapshot (git e31d451)
   * Refresh and update patches
   * New build-dependency: zlib
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Accepted daligner 1.0+20161119-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 18 Jan 2017 22:16:19 -0800
Source: daligner
Binary: daligner
Architecture: source
Version: 1.0+20161119-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 daligner   - local alignment discovery between long nucleotide sequencing read
Changes:
 daligner (1.0+20161119-1) unstable; urgency=medium
 .
   * New upstream snapshot (git a9458dc)
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Accepted kineticstools 0.6.1+20161222-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sun, 15 Jan 2017 15:53:34 -0800
Source: kineticstools
Binary: kineticstools kineticstools-data python-kineticstools
Architecture: source
Version: 0.6.1+20161222-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 kineticstools - detection of DNA modifications
 kineticstools-data - detection of DNA modifications -- data files
 python-kineticstools - detection of DNA modifications (Python 2 library)
Closes: 848542
Changes:
 kineticstools (0.6.1+20161222-1) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Add fake watch file to silence uscan
 .
   [ Afif Elghraoui ]
   * New upstream revision (Closes: #848542)
   * Drop Files-Excluded
   * Drop patch applied upstream
   * Add README.source to explain how to get new upstream versions
   * Update patches without undoing their effects
   * autopkgtests: Don't run extra-tests and long-tests
   * Suggest python-pybigwig
 .
   [ Sascha Steinbiss ]
   * Fix man page building
   * Spelling corrections
   * Enable hardening
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Accepted pbalign 0.3.0-1 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 15 Jan 2017 15:49:13 -0800
Source: pbalign
Binary: pbalign python-pbalign pbalign-doc
Architecture: source
Version: 0.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 pbalign- map Pacific Biosciences reads to reference DNA sequences
 pbalign-doc - documentation for pbalign
 python-pbalign - map Pacific Biosciences reads to reference DNA sequences 
(Python2
Changes:
 pbalign (0.3.0-1) unstable; urgency=medium
 .
   * New upstream release (corresponds to smrtanalysis-4.0.0 tag)
   * Readability improvements and clean-ups in d/control and d/rules
   * Update email address and copyright year
   * Bump Standards-Version to 3.9.8
   * Use encrypted protocols for VCS URLs
   * Add build-dependency on pbcommand
   * Drop patch applied upstream
   * Don't install LICENSES file
   * Set blasr minimum version
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Accepted pbsuite 15.8.24+dfsg-2 (source) into unstable

[Afif Elghraoui]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 28 Dec 2016 22:42:12 -0800
Source: pbsuite
Binary: pbsuite python-pbsuite-utils pbjelly pbhoney python-pbbanana
Architecture: source
Version: 15.8.24+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 pbhoney- genomic structural variation discovery
 pbjelly- genome assembly upgrading tool
 pbsuite- software for Pacific Biosciences sequencing data
 python-pbbanana - additional utilities for the pbsuite
 python-pbsuite-utils - software for Pacific Biosciences sequencing data -- 
Python utilit
Closes: 844034
Changes:
 pbsuite (15.8.24+dfsg-2) unstable; urgency=medium
 .
   * Update pbsuite for compatibility with blasr 5 (Closes: #844034)
   * Bump Standards-Version to 3.9.8
   * Add dependency on intervaltree-bio to restore PBHoney's ComplexResolver
   * debian/rules: don't use buildsystem=pybuild
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Accepted dazzdb 1.0+20160930-2 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Tue, 27 Dec 2016 13:19:39 -0800
Source: dazzdb
Binary: dazzdb
Architecture: source
Version: 1.0+20160930-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 dazzdb - manage nucleotide sequencing read data
Closes: 849433
Changes:
 dazzdb (1.0+20160930-2) unstable; urgency=low
 .
   * Drop rename-simulator.patch in favor of a line in d/rules
   * Use LDLIBS rather than LDFLAGS for linking libraries
 Thanks to Logan Rosen (Closes: #849433)
   * Use debhelper compat 10
   * d/rules: remove unnecessary comment
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Accepted daligner 1.0+20160927-2 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Tue, 27 Dec 2016 13:03:16 -0800
Source: daligner
Binary: daligner
Architecture: source
Version: 1.0+20160927-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 daligner   - local alignment discovery between long nucleotide sequencing read
Closes: 849431
Changes:
 daligner (1.0+20160927-2) unstable; urgency=low
 .
   * Use LDLIBS rather than LDFLAGS.
 Thanks to Logan Rosen (Closes: #849431)
   * Suggest dascrubber
   * d/rules: Don't combine CPPFLAGS with CFLAGS
   * Use debhelper compat 10
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Accepted blasr 5.3+0-1 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Fri, 23 Dec 2016 17:50:11 -0800
Source: blasr
Binary: blasr
Architecture: source
Version: 5.3+0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 blasr  - mapping single-molecule sequencing reads
Changes:
 blasr (5.3+0-1) unstable; urgency=medium
 .
   * Imported Upstream version 5.3+0 (corresponds to smrtanalysis-4.0.0 tag)
   * Refresh patches
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Accepted pbcopper 0.0.1+20161202-2 (source) into unstable

[Afif Elghraoui]

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Format: 1.8
Date: Thu, 22 Dec 2016 00:47:01 -0800
Source: pbcopper
Binary: libpbcopper-dev
Architecture: source
Version: 0.0.1+20161202-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 libpbcopper-dev - data structures, algorithms, and utilities for C++ 
applications -
Changes:
 pbcopper (0.0.1+20161202-2) unstable; urgency=medium
 .
   * build with -fPIC
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Accepted pbcopper 0.0.1+20161202-1 (source amd64) into unstable, unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Sat, 17 Dec 2016 01:18:00 -0800
Source: pbcopper
Binary: libpbcopper-dev
Architecture: source amd64
Version: 0.0.1+20161202-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 libpbcopper-dev - data structures, algorithms, and utilities for C++ 
applications -
Closes: 848122
Changes:
 pbcopper (0.0.1+20161202-1) unstable; urgency=medium
 .
   * Initial release (Closes: #848122)
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Accepted pbdagcon 0.3+20161121+ds-1 (source) into unstable

[Afif Elghraoui]

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Hash: SHA256

Format: 1.8
Date: Wed, 21 Dec 2016 01:18:19 -0800
Source: pbdagcon
Binary: pbdagcon
Architecture: source
Version: 0.3+20161121+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@debian.org>
Description:
 pbdagcon   - sequence consensus using directed acyclic graphs
Closes: 848755
Changes:
 pbdagcon (0.3+20161121+ds-1) unstable; urgency=medium
 .
   * New upstream revision (upstream git 87f393f)
   * Include repository's submodules
   * Base package versioning on program versions indicated in the source code
   * Build with pbbam (Closes: #848755)
   * Use pbseqlib metapackages as dependencies
   * Build dazcon
   * Activate build-time tests
   * Use debhelper compat 10
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