Bug#1063352: ITP: ngspetsc -- a PETSc interface for NGSolve

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
francesco.balla...@unicatt.it

* Package name: ngspetsc
  Version : git HEAD
  Upstream Contact: Umberto Zerbinati 
* URL : https://github.com/NGSolve/ngsPETSc
* License : MIT
  Programming Lang: Python
  Description : a PETSc interface for NGSolve

ngsPETSc is a PETSc interface for NGSolve. It extends the utility of
meshes generated by netgen and interfaces with finite element solvers
such as dolfinx (fenicsx) as well as NGSolve, Firedrake.

To be maintained by the Debian Science team alongside netgen.
Co-maintained with Francesco Ballarin.

Bug#1061609: ITP: pydantic-settings -- settings management using pydantic

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-pyt...@lists.debian.org

* Package name: pydantic-settings
  Version : 2.1.0
  Upstream Contact: Samuel Colvin 
* URL : https://github.com/pydantic/pydantic-settings
* License : MIT
  Programming Lang: Python
  Description : settings management using pydantic

Settings management using Pydantic, this is the new official home of
Pydantic's BaseSettings.

Pydantic Settings provides optional Pydantic features for loading a
settings or config class from environment variables or secrets files.

pydantic-settings is used by latest versions of python-mp-api

To be maintained by the Debian Python Team alongside pydantic.

Bug#1061255: ITP: custodian -- flexible just-in-time job management framework in Python

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-pyt...@lists.debian.org, 
debian-scie...@lists.debian.org, debichem-de...@lists.alioth.debian.org

* Package name: custodian
  Version : 2024.1.9
  Upstream Contact: Shyue Ping Ong 
* URL : https://github.com/materialsproject/custodian
* License : MIT/X
  Programming Lang: Python
  Description : flexible just-in-time job management framework in Python

Custodian is a simple, robust and flexible just-in-time (JIT) job
management framework written in Python. Using custodian, you can
create wrappers that perform error checking, job management and error
recovery. It has a simple plugin framework that allows you to develop
specific job management workflows for different applications.

Error recovery is an important aspect of many high-throughput projects
that generate data on a large scale. When you are running on the order
of hundreds of thousands of jobs, even an error-rate of 1% would mean
thousands of errored jobs that would be impossible to deal with on a
case-by-case basis.

The specific use case for custodian is for long running jobs, with
potentially random errors. For example, there may be a script that
takes several days to run on a server, with a 1% chance of some IO
error causing the job to fail. Using custodian, one can develop a
mechanism to gracefully recover from the error, and restart the job
with modified parameters if necessary.

The current version of Custodian also comes with several sub-packages
for error handling for Vienna Ab Initio Simulation Package (VASP),
NwChem, QChem, FEFF, Lobster and CP2K calculations.


Custodian has been developed by the Materials Project team responsible
for pymatgen, and is used to manage tests for emmet-core etc.  It is a
general python package, but designed for computational chemistry. It
could arguably be managed by the Debian Python Team, but probably best
to keep it alongside pymatgen managed by the Debichem team.

Re: General Resolution: Statement about the EU Legislation "Cyber Resilience Act and Product Liability Directive": Last call for votes

[Drew Parsons]

On 2023-12-21 08:21, Debian Project Secretary - Kurt Roeckx wrote:

Hi,

This is the last call for votes.

 Voting period starts  2023-12-09 00:00:00 UTC
 Votes must be received by 2023-12-22 23:59:59 UTC

This vote is being conducted as required by the Debian Constitution.
You may see the constitution at 
https://www.debian.org/devel/constitution.

For voting questions or problems contact secret...@debian.org.

The details of the general resolution can be found at:
https://www.debian.org/vote/2023/vote_002

Also, note that you can get a fresh ballot any time before the end of 
the

vote by sending a signed mail to
   bal...@vote.debian.org
with the subject "gr_cra_pld".

To vote you need to be a Debian Developer.


HOW TO VOTE

First, read the full text of the options.

You might also want to read discussions at
https://lists.debian.org/debian-vote/

To cast a vote, it is necessary to send this ballot filled out to a
dedicated e-mail address, in a signed message, as described below. The
dedicated email address this ballot should be sent to is:

  gr_cra_...@vote.debian.org

The form you need to fill out is contained bellow in this message, 
marked

with two lines containing the characters '-=-=-=-=-=-'. Do not erase
anything between those lines, and do not change the choice names.

There are 4 choices in the form, which you may rank with numbers 
between 1
and 4. In the brackets next to your preferred choice, place a 1. Place 
a 2

in the brackets next to your next choice. Continue until you reach your
last choice. Do not enter a number smaller than 1 or larger than 4.

You may skip numbers, leave some choices unranked, and rank options
equally. Unranked choices are considered equally the least desired
choices, and ranked below all ranked choices.

To vote "no, no matter what", rank "None of the above" as more 
desirable

than the unacceptable choices, or you may rank the "None of the above"
choice and leave choices you consider unacceptable blank. (Note: if the
"None of the above" choice is unranked, then it is equal to all other
unranked choices, if any -- no special consideration is given to the
"None of the above" choice by the voting software).

Finally, mail the filled out ballot to:
gr_cra_...@vote.debian.org.

Don't worry about spacing of the columns or any quote characters (">")
that your reply inserts.

NOTE: The vote must be GPG signed (or PGP signed) with your key that is
in the Debian keyring. You may, if you wish, choose to send a signed,
encrypted ballot: use the vote key appended below for encryption.

The voting software (Devotee) accepts mail that either contains only an
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(RFC 3156 compliant). To avoid problems I suggest you use PGP/MIME.

VOTING SECRECY

This is a secret vote. After the voting period there will be a record
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a cryptographic hash. You will receive a secret after you have voted
that can be used to calculate that hash. This allows you to verify
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mail.

VOTING FORM

- - -=-=-=-=-=- Don't Delete Anything Between These Lines 
=-=-=-=-=-=-=-=-

52bbd34b-1e8e-45ad-bd32-e517dbf2958c
[ ] Choice 1: CRA and PLD proposals include regulations detrimental to 
FOSS
[ ] Choice 2: CRA and PLD proposals should only apply to commercial 
ventures

[ ] Choice 3: The EU should not overrule DFSG 6 and FOSS licenses
[ ] Choice 4: None Of The Above
- - -=-=-=-=-=- Don't Delete Anything Between These Lines 
=-=-=-=-=-=-=-=-


--

The responses to a valid vote shall be signed by the vote key created 
for
this vote. The public key for the vote, signed by the Project 
secretary,

is appended below.

BALLOT OPTIONS

Choice 1: CRA and PLD proposals include regulations detrimental to FOSS
===

Debian Public Statement about the EU Cyber Resilience Act and the
Product Liability Directive

The European Union is currently preparing a regulation "on 
horizontal
cybersecurity requirements for products with digital elements" 
known as
the Cyber Resilience Act (CRA). It is currently in the final 
"trilogue"
phase of the legislative process. The act includes a set of 
essential
cybersecurity and vulnerability handling requirements for 
manufacturers.

It will require products to be accompanied by information and
instructions to the user. Manufacturers will need to perform risk
assessments and produce technical documentation and, for critical
components, have third-party audits conducted. Discovered security
issues will have to be reported to European authorities within 24 
hours

(1). The CRA will be followed up by the Product Liability Directive
(PLD) which will introduce compulsory liability for software.

   

Re: OpenMPI / MPI transition

[Drew Parsons]

On 2023-11-24 15:00, Alastair McKinstry wrote:

My understanding is that MPICH has been typically the reference
implementation, higher quality but less performant, particularly with
the range of fabrics. Certainly I've seen mostly OpenMPI but not MPICH
on various HPC machines. People would use either OpenMPI or a vendors
MPI (which may be forked MPICH with added network hardware support).


I took a straw poll in one of our upstream fora, and the reply there was 
similar. The serious performance improvements come from the fabrics 
drivers provided by the hardware manufacturers. So it doesn't really 
matter too much which implementation we default to.  I'm comfortable 
moving to a mixed default, OpenMPI on 64 bit and MPICH on 32 bit or 
where needed.


Drew

Re: OpenMPI / MPI transition

[Drew Parsons]

On 2023-11-23 12:13, Emilio Pozuelo Monfort wrote:

Hi,

On 23/11/2023 09:36, Alastair McKinstry wrote:

Hi,

OpenMPI has a new upstream release 5.0.0. It is in experimental now; 
the SOVERSION for libraries remains 40.X (minor version increment), 
there is  an SOVERSION increment for private libraries only so in 
theory this is not an ABI transition. However 5.0.0 drops 32-bit 
system support.


The default MPI implementation for each architecture is set in 
mpi-defaults; this allows a per-arch MPI choice; in practice we 
currently use OpenMPI for all archs. The other choice is MPICH.


So the question becomes: do we switch MPI for just 32-bit archs, or 
all? What are the release teams opinion on this transition?


Having the same implementation across the board makes things easier
for testing purposes et al, however I don't see that as a blocker for
not having separate implementations.


True, in one sense it's simpler to have the same default MPI.  But we've 
set up our package infrastructure so that in principle it should not 
matter.  One architecture does not (or should not) depend on another, so 
it shouldn't break packages just because we'd have different MPI 
implementations on different architectures.  On the contrary, "actively" 
using both implementations could lead to more robust packages overall as 
MPI bugs get fixed against both implementations.



What are your thoughts on it? Is there a strong reason why we should
stick with OpenMPI for 64bit releases? Or from a different POV, what
are the risks of changing the implementation? Introducing a different
set of bugs?


One point to consider is that upstream developers of several of our 
numerical libraries have time and again suggested to us that we use 
mpich instead of openmpi, even before this v5 shift. They perceive 
(rightly or wrongly) that mpich is more robust, more reliable.


It would be useful to know whether that changes with v5, or whether 
their complaints are historical and openmpi has already fixed the bugs 
that concerned them. mpich has had its own share of bugs over the years. 
My memory told me RMA support was an issue in openmpi, but when I 
checked my facts, it was mpich that had to be fixed 
(https://github.com/pmodels/mpich/issues/6110)


Drew

Bug#1031523: ITP: iqmol -- molecular builder and visualization package

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, Debichem Team 
, Debian Science List 


* Package name: iqmol
  Version : 3.1.2
  Upstream Contact: Andrew Gilbert 
* URL : http://iqmol.org/
* License : GPL
  Programming Lang: C++
  Description : molecular builder and visualization package

IQmol is able to build molecules, set up and submit input for Q-Chem
calculations, and analyse the output. Analyses include display of
molecular surfaces (densites, molecular orbitals) and animations of
frequencies and reaction pathways.

To be maintained by the Debichem Team.

Re: OpenMPI 5.0 to be 32-bit only ?

[Drew Parsons]

On 2023-02-07 10:54, Alastair McKinstry wrote:

Hi

I've been pinged by the upstream maintainer of OpenMPI    Jefff
Squyres as to our opinions on maintaining 32-bit support.

See a  thread here: https://github.com/open-mpi/ompi/pull/11282

Until now I've asked for OMPI to hold off going to 64-bit only; saying
we can help with the maintenance burden with our testing
infrastructure.

But we're not well suited to run multi-node test jobs.


If Lucas Nussbaum thinks it's appropriate, one thing we could consider 
is setting up multinode tests on the Grid'5000 [1] infrastructure.  It 
would take a bit of effort to set up, but once set up it should be able 
to run multinode tests routinely.  Although, true, it would only allow 
for 64-bit testing, i.e. amd64 (plus also arm64 and ppc64el), so it 
might not help with the question of 32-bit support unless 32-bit chroots 
can be set up.


[1] https://www.grid5000.fr



If 32-bit support is dropped in OMPI we can switch to MPICH as the
default on those archs instead, but the core problem remains: how much
can we support and test on 32-bit?


Switching to mpich would in any case be supported by a lot of our 
upstream developers.  In various different projects we hear them 
recommending mpich and occasionally expressing discontent with bugs in 
openmpi.


To make it simpler for ourselves, we could also consider just switching 
to mpich altogether as default.  Are there reasons to prefer 64-bit OMPI 
over MPICH?


Drew

Bug#1030520: ITP: python-emmet -- core models, data pipelines for Materials Project

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
debichem-de...@lists.alioth.debian.org

* Package name: python-emmet
  Version : 0.36.4
  Upstream Contact: Jason Munro 
* URL : https://github.com/materialsproject/emmet
* License : BSD
  Programming Lang: Python
  Description : core models, data pipelines for Materials Project

Emmet defines the core models, data pipelines, the API server, and the
convenience CLI used by the Materials API Toolkit for the Materials
Project.

Required by mp-api (python-mp-api) which is required by pymatgen.

To be maintained by the Debichem team alongside pymatgen.

Bug#1030518: ITP: python-mp-api -- Materials Project API

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
debichem-de...@lists.alioth.debian.org
Control: affects -1 src:pymatgen

* Package name: python-mp-api
  Version : 0.27.3
  Upstream Contact: Jason Munro 
* URL : https://github.com/materialsproject/api
* License : BSD
  Programming Lang: Python
  Description : Materials Project API

The Materials Project API defines a standardized manner in which the
Materials Project database can be accessed by its users. The API is
typically used by scientific researchers who need to retrieve large
amounts of data to support their research.

mp-api is required by pymatgen.

To be maintained by the Debichem team alongside pymatgen.

Bug#1026079: ITP: dolfinx-mpc -- Multi-point constraints with FEniCS-X

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, Debian Science List 


* Package name: dolfinx-mpc
  Version : 0.5.0.post0
  Upstream Contact: Jørgen S. Dokken
* URL : https://github.com/jorgensd/dolfinx_mpc
* License : MIT
  Programming Lang: C++, Python
  Description : Multi-point constraints with FEniCS-X

 This library contains an add-on to FEniCSx enabling the possibilities
 of enforce multi-point constraints. This can be used to for instance
 enforce slip conditions strongly.

This package is not part of the official FEniCS suite, hence not given
the fenics- prefix.

It may prove useful for systems with periodic boundary conditions.
These were supported by old dolfin, but apparently not in new dolfinx.

To be maintained by the Debian Science Team alongside the FEniCS
packages.

Bug#1024572: ITP: golang-github-dop251-scsu -- A Standard Compression Scheme for Unicode implementation in Go

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-dop251-scsu
  Version : 0.0~git20220106.84ac880-1
  Upstream Author : Dmitry Panov
* URL : https://github.com/dop251/scsu
* License : Expat
  Programming Lang: Go
  Description : A Standard Compression Scheme for Unicode implementation in 
Go
 A Standard Compression Scheme for Unicode implementation in Go.
 .
 This in an implementation of SCSU as described in
 (https://www.unicode.org/reports/tr6/tr6-4.html)
 .
 Although UTF-8 is now the most commonly used and recommended encoding, in
 some cases the use of SCSU can be beneficial. For example when storing
 or transmitting short alphabetical texts (Arabic, Hebrew, Russian, etc.)
 where general-purpose compression algorithms are inefficient, but SCSU
 provides nearly 50% compression ratio over UTF-8.
 .
 The code is based on the sample Java implementation found at
 (ftp://ftp.unicode.org/Public/PROGRAMS/SCSU/) however the encoding
 algorithm has been slightly modified as the implementation above
 contains a few bugs.
 .
 The code has been fuzz-tested using go-fuzz to ensure that random input 
neither crashes the Encoder nor the Decoder,
 and if it happens to be a valid UTF-8, an Encode/Decode cycle produces
 identical output.


Required by latest version of rclone.

To be maintained by the Debian Go Team.

Bug#1024569: ITP: golang-github-rclone-ftp -- FTP client package for Go

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-rclone-ftp
  Version : 1.0.0-210902h-1
  Upstream Author : Julien Laffaye 
* URL : https://github.com/rclone/ftp
* License : ISC
  Programming Lang: Go
  Description : FTP client package for Go

 A FTP client package for Go


Required by the latest version of rclone.

To be maintained by the Debian Go Team (alongside rclone)

Bug#1024556: ITP: golang-github-iguanesolutions-go-systemd -- Golang bindings for systemd

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-iguanesolutions-go-systemd
  Version : 5.1.0-1
  Upstream Author : Iguane Solutions
* URL : https://github.com/iguanesolutions/go-systemd
* License : Expat
  Programming Lang: Go
  Description : Golang bindings for systemd

 Easily communicate with systemd when run as daemon within a service
 unit.
 .
 With notifier you can notify to systemd that your program is starting,
 stopping, reloading...
 .
 For example, if your daemon needs some time for initializing its
 controllers before really being considered as ready, you can specify to
 systemd that this is a "notify" service and send it a notification when
 ready.
 .
 It is safe to use it even if systemd notify support is disabled (noop
 call).


Required by the latest version of rclone.

To be maintained by the Debian Go Team.

Bug#1024527: ITP: golang-github-geoffgarside-ber -- Fork of golang pkg `encoding/asn1` to support the Basic Encoding Rules

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
Control: block 1024470 by -1

* Package name: golang-github-geoffgarside-ber
  Version : 1.1.0-1
  Upstream Author : Geoff Garside
* URL : https://github.com/geoffgarside/ber
* License : BSD-3-clause
  Programming Lang: Go
  Description : Fork of golang pkg `encoding/asn1` to support the Basic 
Encoding Rules

 This package is a fork of the standard library encoding/asn1 package,
 adding Basic Encoding Rules support for use with github.com/k-sone/snmpgo
 (https://github.com/k-sone/snmpgo).


Required by golang-github-hirochachacha-go-smb2,
which is required by the latest version of rclone

To be maintained by the Debian Go Team.

Bug#1024470: ITP: golang-github-hirochachacha-go-smb2 -- SMB2/3 client library written in Go.

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-hirochachacha-go-smb2
  Version : 1.1.0-1
  Upstream Author : xHiroshi Ioka 
* URL : https://github.com/hirochachacha/go-smb2
* License : BSD-2-clause
  Programming Lang: Go
  Description : SMB2/3 client library written in Go.
 SMB2/3 client implementation for the Go language.


Required by the latest version of rclone

To be maintained by the Debian Go Team.

Bug#1024445: ITP: gokrb5 -- Pure Go Kerberos library for clients and services

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-jcmturner-gokrb5
  Version : 8.4.3-1
  Upstream Author : Jonathan Turner
* URL : https://github.com/jcmturner/gokrb5
* License : Apache-2.0
  Programming Lang: Go
  Description : Pure Go Kerberos library for clients and services

  * Server Side
* HTTP handler wrapper implements SPNEGO Kerberos authentication
* HTTP handler wrapper decodes Microsoft AD PAC authorization data
  * Client Side
* Client that can authenticate to an SPNEGO Kerberos authenticated
web service
* Ability to change client's password
  * General
* Kerberos libraries for custom integration
* Parsing Keytab files
* Parsing krb5.conf files
* Parsing client credentials cache files such as /tmp/krb5cc_$(id -u
$(whoami))


v5 of this package is already available in golang-gopkg-jcmturner-gokrb5.v5-dev
but the latest version of rclone requires gokrb5 v8.

This package is intended to provide the latest version of gokrb5 
(without using a -v version tag)

To be maintained by the Debian Go Team.

Bug#1024442: ITP: hdfs -- A native go client for HDFS

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-colinmarc-hdfs
  Version : 2.3.0-1
  Upstream Author : Colin Marc
* URL : https://github.com/colinmarc/hdfs
* License : Expat
  Programming Lang: Go
  Description : A native go client for HDFS

 This is a native golang client for hdfs. It connects directly to the
 namenode using the protocol buffers API.
 .
 It tries to be idiomatic by aping the stdlib os package, where possible,
 and implements the interfaces from it, including os.FileInfo and
 os.PathError.
 .
 Along with the library, this repo contains a commandline client for
 HDFS. Like the library, its primary aim is to be idiomatic, by enabling
 your favorite unix verbs:


Required by the latest version of rclone.

To be maintained by the Debian Go Team.

Bug#1024436: ITP: golang-github-buengese-sgzip -- Experiments for a seekable gzip for use in rclone. Based on pgzip

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-buengese-sgzip
  Version : 0.0~git20220517.9bca1b6-1
  Upstream Author : Sebastian Bünger
* URL : https://github.com/buengese/sgzip
* License : Expat
  Programming Lang: Go
  Description : experiments for a seekable gzip for use in rclone based on 
pgzip

 This is an experimental implementation of gzip that allows seeking in
 the compressed file. In normal gzip files that can only be achieved by
 decompressing from the start and discarding all data until the selected
 offset. This gzip implementation works around this by creating a special
 metadata file that maps uncompressed blocks to compressed blocks
 allowing it to only read the compressed blocks required.
 .
 Due to necessity of being able to start decompression from any block the
 dictionary is reset after every block. This somewhat negatively effects
 compression ratio but is a necessary tradeof in our use case. The gzip
 files created by this library are valid normal gzip files and can be
 decompressed by any other gzip implementation.
 .
 Warning
 .
 This library was purpose build for the rclone compression backend. If
 you are looking for a multithreaded golang gzip implementation you
 should be using klauspost/pgzip (https://github.com/klauspost/pgzip)
 which is the base for this library.
 .
 License
 .
 This contains large portions of code from the go repository - see
 GO_LICENSE for more information. The changes are released under MIT
 License. See LICENSE for more information.


Required by the latest version of rclone.

To be maintained by the Debian Go Team.

Bug#1024432: ITP: golang-github-artyom-mtab -- Package to read /proc/self/mounts entries

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-artyom-mtab
  Version : 1.0.0-1
  Upstream Author : Artyom Pervukhin
* URL : https://github.com/artyom/mtab
* License : Expat
  Programming Lang: Go
  Description : Package to read /proc/self/mounts entries

Provides /proc/self/mounts in the Go language

Required by the latest version of rclone.

To be packaged by the Debian Go Team.

Bug#1024424: ITP: golang-github-max-sum-base32768 -- go implementation of base32768, optimized for UTF-16

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-max-sum-base32768
  Version : 0.0~git20191205.7937843-1
  Upstream Author : Max Sum
* URL : https://github.com/Max-Sum/base32768
* License : Expat
  Programming Lang: Go
  Description : go implementation of base32768, optimized for UTF-16

 Check (https://github.com/qntm/base32768) for information about
 base32768.


Required by latest version of rclone

To be maintained by the Debian Go Team

Bug#1024311: ITP: golang-github-google-go-pkcs11 --

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-google-go-pkcs11
  Version : 0.2.0-1
  Upstream Author : Google
* URL : https://github.com/google/go-pkcs11
* License : Apache-2.0
  Programming Lang: Go
  Description : Go package for loading PKCS #11 modules

 Go PKCS #11
 .
 Go Reference (https://pkg.go.dev/github.com/google/go-pkcs11/pkcs11)
 .
 A Go package for loading PKCS #11 modules.


Required by the signer module of 
golang-github-googleapis-enterprise-certificate-proxy.

To be maintained by the Debian Go Team.

Bug#1024276: ITP: golang-github-googleapis-enterprise-certificate-proxy -- Google Proxies for Enterprise Certificates

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian...@lists.debian.org

* Package name: golang-github-googleapis-enterprise-certificate-proxy
  Version : 0.1.0
  Upstream Author : Andy Zhao 
* URL : https://github.com/googleapis/enterprise-certificate-proxy
* License : Apache2.0
  Programming Lang: Go
  Description : Google Proxies for Enterprise Certificates

Certificate-based-access

If you use certificate-based access to protect your Google Cloud
resources, the end user device certificate is one of the credentials
that is verified before access to a resource is granted. You can
configure Google Cloud to use the device certificates in your
operating system key store when verifying access to a resource from
the gcloud CLI or Terraform by using the enterprise certificates
feature.

Google Enterprise Certificate Proxies (ECP)

Google Enterprise Certificate Proxies (ECP) are part of the Google
Cloud Zero Trust architecture that enables mutual authentication with
client-side certificates. This repository contains a set of
proxies/modules that can be used by clients or toolings to interact
with certificates that are stored in protected key storage systems.

To interact the client certificates, application code should not need
to use most of these proxies within this repository directly. Instead,
the application should leverage the clients and toolings provided by
Google such as Cloud SDK to have a more convenient developer
experience.

Required by new versions of golang-google-api.

To be maintained by the Debian Go Team.

Bug#1023387: ITP: golang-github-anacrolix-log -- context-style logging for Go

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian...@lists.debian.org

* Package name: golang-github-anacrolix-log
  Version : 0.13.1
  Upstream Author : Matt Joiner
* URL : https://github.com/anacrolix/log
* License : MPL
  Programming Lang: Go
  Description : context-style logging for Go

context-style logging for Go. similar to zerolog but with lots of
allocations 

Required by golang-github-anacrolix-dms 1.5.0
(which is required by rclone 1.60.0)

To be maintained by the Debian Go Team.

Bug#1000711: ITP: pymatgen-test-files -- test files for pymatgen

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, Debichem Team 


* Package name: pymatgen-test-files
  Version : 2022.0.16
  Upstream Author : Shyue Ping Ong 
* URL : Shyue Ping Ong 
* License : MIT
  Programming Lang: Python
  Description : test files for pymatgen

Pymatgen (Python Materials Genomics) is a robust, open-source Python
library for materials analysis.

This package provides pymatgen test files, used to test that the
pymatgen installation is functioning correctly.


These tests files are not provided in upstream pymatgen source
tarballs (the tarballs made available at the upstream project website,
distinct from their github repository), since their size is huge
(778MB).  The debian source package for pymatgen included them by
taking source tarballs from upstream github releases.

Upstream does not expect users (or distributions) to run these tests.
They run their own tests using github facilities.  But obviously for
the Debian distribution we want to run the tests at build time and in
debci.

We can expect that the test files will change much more slowly than
the pymatgen code itself.  This pymatgen-test-files source package is
intended to help make the size of the pymatgen package more reasonable
by splitting off the test files. pymatgen will be updated to honour
the nocheck build option to allow local builds without requiring
access to the large test file set.

To be maintained by the Debichem team alongside the main pymatgen
package.

Bug#1000311: ITP: python-meshzoo -- simple geometric meshes

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: python-meshzoo
  Version : 0.9.0
  Upstream Author : Nico Schlömer 
* URL : https://github.com/nschloe/meshzoo
* License : GPL-3
  Programming Lang: Python
  Description : simple geometric meshes

When generating meshes for FEM/FVM computations, sometimes your
geometry is so simple that you don't need a complex mesh generator
(like pygmsh, MeshPy, mshr, pygalmesh, dmsh), but something simple and
fast that makes use of the structure of the domain. Enter meshzoo.

Examples: Triangle, Rectangle, Regular polygon, Disk, Möbius strip,
Sphere (surface), Ball (solid), Tube, Cube.

Required for running meshplex tests (liberating from the current
tangled dmsh patch).

To be maintained under the Debian Science Team alongside meshplex and
Nico's other python packages.

Bug#995883: ITP: python-npx -- extensions for NumPy

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-pyt...@lists.debian.org, 
debian-scie...@lists.debian.org

* Package name: python-npx
  Version : 0.0.20
  Upstream Author : Nico Schlömer 
* URL : https://github.com/nschloe/npx
* License : BSD-3-clause
  Programming Lang: Python
  Description : extensions for NumPy

NumPy is a large library used everywhere in scientific computing.
That's why breaking backwards-compatibility comes at a significant
cost and is almost always avoided, even if the API of some methods is
arguably lacking. This package provides drop-in wrappers "fixing" those.

Provides alternative algorithms for dot, solve, sum_at/add_at,
unique_rows, isin_rows, mean.

Required by new releases of python-meshplex.

To be maintained under the Debian Python Team alongside numpy.

Bug#985020: ITP: xtensor-blas -- an extension to xtensor offering bindings to BLAS and LAPACK

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, Debian Science List 


* Package name: xtensor-blas
  Version : 0.6.1
  Upstream Author : QuantStack: Wolf Vollprecht, Johan Mabille and Sylvain 
Corlay
* URL : https://github.com/xtensor-stack/xtensor-blas
* License : BSD
  Programming Lang: C++
  Description : an extension to xtensor offering bindings to BLAS and LAPACK

xtensor-blas is an extension to the header-only xtensor library,
offering bindings to BLAS and LAPACK libraries through cxxblas and
cxxlapack from the FLENS project.

xtensor-blas currently provides non-broadcasting dot, norm (1- and
2-norm for vectors), inverse, solve, eig, cross, det, slogdet,
matrix_rank, inv, cholesky, qr, svd in the xt::linalg namespace (check
the corresponding xlinalg.hpp header for the function signatures). The
functions, and signatures, are trying to be 1-to-1 equivalent to
NumPy. Low-level functions to interface with BLAS or LAPACK with
xtensor containers are also offered in the blas and lapack namespace.

Used by basix and dolfinx in the FEniCS project.

To be maintained alongside xtensor by the Debian Science Team.

Bug#981046: ITP: basix -- Finite Element Basis Function Definition Runtime Library

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org

* Package name: basix
  Version : 0.0.1
  Upstream Author : FEniCS Project
* URL : https://github.com/FEniCS/basix
* License : MIT
  Programming Lang: Python/C++
  Description : Finite Element Basis Function Definition Runtime Library



computes FE basis functions and derivatives for the following elements:
Lagrange (interval, triangle, tetrahedron, prism, pyramid, quadrilateral, 
hexahedron)
Nédélec (triangle, tetrahedron)
Nédélec Second Kind (triangle, tetrahedron)
Raviart-Thomas (triangle, tetrahedron)
Regge (triangle, tetrahedron)
Crouzeix-Raviart (triangle, tetrahedron)

computes quadrature rules on different cell types

provides reference topology and geometry for reference cells of each type

python wrapper with pybind11


This is a new component in the FEniCS suite, used by ffcx and dolfinx
in the next-generation version FENICS-X.

It will be maintained by the Debian Science Team, under the fenics
subproject.

Bug#970123: ITP: fenicsx-performance-tests -- solvers for testing the parallel performance of DOLFIN-X

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
lu...@debian.org

* Package name: fenicsx-performance-tests
  Version : git20200719.42769f8
  Upstream Author : Chris N. Richardson 
* URL : https://github.com/FEniCS/performance-test
* License : MIT
  Programming Lang: C++
  Description : solvers for testing the parallel performance of DOLFIN-X

This package contains solvers for testing the parallel performance of
DOLFIN-X and the underlying linear solvers. It tests elliptic equations
- Poisson equation and elasticity - in three dimensions.

DOLFINX-X is the next-generation solver for the FEniCS project.

The intention of this package is help demonstrate and monitor the HPC
performance of Debian's FEniCS/DOLFIN-X packages. HPC compute time has
been graciously offered for HPC package testing by France's Grid5000
consortium, grid5000.fr.

To be maintained alongside fenics/dolfinx under the 
Debian Science Team. 

Bug#969785: ITP: fenics-performance-tests -- solvers for testing the parallel performance of DOLFIN

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
lu...@debian.org

* Package name: fenics-performance-tests
  Version : git20190115.e866927
  Upstream Author : Chris N. Richardson 
* URL : https://bitbucket.org/fenics-project/performance-tests/
* License : MIT
  Programming Lang: C++
  Description : solvers for testing the parallel performance of DOLFIN

This package contains solvers for testing the parallel performance of
DOLFIN and the underlying linear solvers. It tests elliptic equations
- Poisson equation and elasticity - in three dimensions.

The intention of this package is help demonstrate and monitor the HPC
performance of Debian's FEniCS/DOLFIN packages. HPC compute time has
been graciously offered for HPC package testing by France's Grid5000
consortium, grid5000.fr.

To be maintained alongside fenics under the Debian Science Team.

Bug#962338: 1

[Drew Parsons]

Package: wnpp
Followup-For: Bug #962338
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, Emmanuel Arias 
, mithra...@debian.org

Emmanuel, Tristan, thanks for getting monty into the NEW queue!

Drew

Bug#968844: ITP: python-meshplex -- fast tools for simplex meshes

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-pyt...@lists.debian.org, 
debian-scie...@lists.debian.org

* Package name: python-meshplex
  Version : 0.13.2
  Upstream Author : Nico Schlömer 
* URL : https://github.com/nschloe/meshplex
* License : GPL-3
  Programming Lang: Python
  Description : fast tools for simplex meshes

Compute all sorts of interesting points, areas, and volumes in
triangular and tetrahedral meshes, with a focus on efficiency. Useful
in many contexts, e.g., finite-element and finite-volume computations.

Required by dmsh and other tools created by Nico Schlömer.

To be maintained under the Debian Science Team alongside dmsh and
meshio.

Bug#968228: ITP: opendrop -- fully-featured pendant drop tensiometry software

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
debichem-de...@lists.alioth.debian.org

* Package name: opendrop
  Version : 3.1.7dev0
  Upstream Author : Joseph Berry, Rico Tabor, E. Huang (opendrop@gmail.com)
* URL : http://opencolloids.com
* License : GPL3
  Programming Lang: Python
  Description : fully-featured pendant drop tensiometry software

OpenDrop is a fully-featured pendant drop tensiometry software,
allowing acquisition, analysis and fitting of pendant drop profiles to
obtain surface and interfacial tension. OpenDrop also includes
functionality for measuring sessile drop contact angles.

OpenDrop was developed by a team in Melbourne, Victoria, working
across three main institutions: Monash University (School of
Chemistry), the University of Melbourne (Department of Mathematics and
Statistics and Chemical and Biomolecular Engineering) and the CSIRO.
The code authors/maintainers are Drs Michael Neeson, Joe Berry and
Rico Tabor, and E .Huang.

If you use this software in your research, please cite the following
journal articles:

J. D. Berry, M. J. Neeson, R. R. Dagastine, D. Y. C. Chan and
R. F. Tabor, Measurement of surface and interfacial tension using
pendant drop tensiometry. Journal of Colloid and Interface Science 454
(2015) 226–237. https://doi.org/10.1016/j.jcis.2015.05.012

E. Huang, T. Denning, A. Skoufis, J. Qi, R. R. Dagastine, R. F. Tabor
and J. D. Berry, OpenDrop: Open-source software for pendant drop
tensiometry & contact angle measurements, submitted to the Journal of
Open Source Software

These citations help us not only to understand who is using and
developing OpenDrop, and for what purpose, but also to justify
continued development of this code and other open source resources.

To be packaged under the Debichem team, unless the packager's whim
lands it under the Debian Science Team.

Bug#966918: ITP: pygmsh -- combine the power of Gmsh with the versatility of Python

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-scie...@lists.debian.org, 
debian-pyt...@lists.debian.org

* Package name: pygmsh
  Version : 6.1.1
  Upstream Author : Nico Schlömer 
* URL : https://github.com/nschloe/pygmsh
* License : GPL3
  Programming Lang: Python
  Description : combine the power of Gmsh with the versatility of Python

Gmsh is a powerful mesh generation tool with a scripting language that
is notoriously hard to write.

The goal of pygmsh is to combine the power of Gmsh with the
versatility of Python and to provide useful abstractions from the Gmsh
scripting language so you can create complex geometries more easily.

Used by dolfinx (in tests).

To be maintained with the Debian Science Team alongside pygalmesh.

Bug#962442: ITP: mdtraj -- Read, write and analyze MD trajectories in Python

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: mdtraj
  Version : 1.9.4
  Upstream Author : Robert McGibbon and team
* URL : http://mdtraj.org/
* License : LGPL
  Programming Lang: Python
  Description : Read, write and analyze MD trajectories in Python

Read, write and analyze MD trajectories with only a few lines of
Python code.

MDTraj is a python library that allows users to manipulate molecular
dynamics (MD) trajectories. Features include:
* Wide MD format support, including pdb, xtc, trr, dcd, binpos,
netcdf, mdcrd, prmtop, and more.
* Extremely fast RMSD calculations (4x the speed of the original
Theobald QCP).
* Extensive analysis functions including those that compute
bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR
observables.
* Lightweight, Pythonic API.

MDTraj includes a command-line application, mdconvert, for converting
trajectories between formats.

Enhances application of lammps, gromacs, and other molecular dynamics
simulation suites.

Complements or competes with pymatgen and mdanalysis. We need them all
installable in order to be able to test which one is most useful for a
given project.

To be maintained under the Debichem Team.

Bug#962440: ITP: mdanalysis -- analyse molecular dynamics files and trajectories

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: mdanalysis
  Version : 0.20.1
  Upstream Author : O. Beckstein and team
* URL : https://www.mdanalysis.org/
* License : GPL
  Programming Lang: Python
  Description : analyse molecular dynamics files and trajectories


Enhances application of lammps, gromacs, and other molecular dynamics
simulation suites.

Complements or competes with pymatgen and mdtraj. We need them all
installable in order to be able to test which one is most useful for a
given project.

To be maintained under the Debichem Team.

Bug#962341: ITP: ruamel.yaml.clib -- C based reader/scanner and emitter for ruamel.yaml

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: ruamel.yaml.clib
  Version : 0.2.0
  Upstream Author : Anthon van der Neut 
* URL : https://sourceforge.net/projects/ruamel-yaml-clib/
* License : MIT
  Programming Lang: Python/C
  Description : C based reader/scanner and emitter for ruamel.yaml

This package was split of from ruamel.yaml, so that ruamel.yaml can be
build as a universal wheel. Apart from the C code seldom changing, and
taking a long time to compile for all platforms, this allows
installation of the .so on Linux systems under /usr/lib64/pythonX.Y
(without a .pth file or a ruamel directory) and the Python code for
ruamel.yaml under /usr/lib/pythonX.Y.

Required by ruamel.yaml >= 0.16.8.

To be maintained by the Python Modules Team.

Bug#962268: ITP: pymatgen -- Python Materials Genomics for materials analysis

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: pymatgen
  Version : 2020.4.29
  Upstream Author : Shyue Ping Ong 
* URL : https://pymatgen.org/
* License : MIT
  Programming Lang: Python
  Description : Python Materials Genomics for materials analysis

Pymatgen (Python Materials Genomics) is a robust, open-source Python
library for materials analysis. These are some of the main features:

1.Highly flexible classes for the representation of Element, Site,
Molecule, Structure objects.

2.Extensive input/output support, including support for VASP
(http://cms.mpi.univie.ac.at/vasp/), ABINIT (http://www.abinit.org/),
CIF, Gaussian, XYZ, and many other file formats.

3.Powerful analysis tools, including generation of phase diagrams,
Pourbaix diagrams, diffusion analyses, reactions, etc.

4.Electronic structure analyses, such as density of states and band
structure.

5.Integration with the Materials Project REST API, Crystallography
Open Database.


To be maintained under the banner of the debichem team.

Accepted ffc 2019.2.0~git20200123.6b621eb-1exp1 (source) into experimental

[Drew Parsons]

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Date: Tue, 28 Jan 2020 23:31:25 +0800
Source: ffc
Architecture: source
Version: 2019.2.0~git20200123.6b621eb-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Changes:
 ffc (2019.2.0~git20200123.6b621eb-1exp1) experimental; urgency=medium
 .
   * New upstream snapshot (legacy ffc)
   * revert upstream source repo back to
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 - drop Depends: python3-cffi
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Accepted dijitso 2019.2.0~git20190418.c92dcb0-1 (source) into experimental

[Drew Parsons]

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Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
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Accepted mpi4py 3.0.3-4 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 26 Jan 2020 06:22:02 +0800
Source: mpi4py
Architecture: source
Version: 3.0.3-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 mpi4py (3.0.3-4) unstable; urgency=medium
 .
   * Team upload.
   * debian patch skip_ppc_failing_tests.patch skips tests
 testCreateF90RealDouble and testCreateF90ComplexDouble in
 test_datatype.py on all ppc arches, where they fail with OpenMPI 4.
 These tests pass on other arches. See Bug#948655.
   * Standards-Version: 4.5.0
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Accepted xhtml2pdf 0.2.4-1 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Sat, 25 Jan 2020 11:05:29 +0800
Source: xhtml2pdf
Architecture: source
Version: 0.2.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Drew Parsons 
Changes:
 xhtml2pdf (0.2.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
 - deprecates debian patch use_html_not_cgi.patch,
   instead Depends: python3-six
   * Standards-Version: 4.5.0
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Accepted avogadro 1.91.0-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Sat, 25 Jan 2020 10:18:58 +0800
Source: avogadro
Architecture: source
Version: 1.91.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Changes:
 avogadro (1.91.0-2) unstable; urgency=medium
 .
   * Team upload.
   * Standards-Version: 4.5.0
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Accepted ffc 2019.2.0~git20200106.7c19661-1 (source) into experimental

[Drew Parsons]

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Format: 1.8
Date: Fri, 24 Jan 2020 03:59:12 +0800
Source: ffc
Architecture: source
Version: 2019.2.0~git20200106.7c19661-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Changes:
 ffc (2019.2.0~git20200106.7c19661-1) experimental; urgency=medium
 .
   * New upstream snapshot (ffcx)
 - Depends: python3-cffi
 - drops Depends: python3-dijitso
   * update upstream source repo to https://github.com/FEniCS/ffcx
   * Standards-Version: 4.5.0
   * drop debian patch ufc-include-path.patch. A python2 version is no
 longer provided so no need to provide alternative ufc.h.
 Remove existing alternatives links in preinst.
   * use pytest-3 in debian/tests with Depends: python3-pygraphviz
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Accepted lybniz 3.0.4-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Fri, 24 Jan 2020 09:35:24 +0800
Source: lybniz
Architecture: source
Version: 3.0.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 lybniz (3.0.4-2) unstable; urgency=medium
 .
   * Standards-Version: 4.5.0
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Accepted fiat 2019.2.0~git20191021.825b23a-1 (source) into experimental

[Drew Parsons]

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Format: 1.8
Date: Fri, 24 Jan 2020 02:30:01 +0800
Source: fiat
Architecture: source
Version: 2019.2.0~git20191021.825b23a-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Changes:
 fiat (2019.2.0~git20191021.825b23a-1) experimental; urgency=medium
 .
   * New upstream snapshot for dolfinx
   * update upstream source repo to https://github.com/FEniCS/fiat
   * Standards-Version: 4.5.0
   * drop dummy package python-fiat
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Accepted ufl 2019.2.0~git20191118.287c42a-1 (source) into experimental

[Drew Parsons]

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Format: 1.8
Date: Fri, 24 Jan 2020 01:36:08 +0800
Source: ufl
Architecture: source
Version: 2019.2.0~git20191118.287c42a-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Changes:
 ufl (2019.2.0~git20191118.287c42a-1) experimental; urgency=medium
 .
   * New upstream snapshot for dolfinx.
   * update upstream source repo to https://github.com/FEniCS/ufl
   * Standards-Version: 4.5.0
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Accepted lybniz 3.0.4-1 (source all) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 20 Jan 2020 21:25:04 +0800
Source: lybniz
Binary: lybniz
Architecture: source all
Version: 3.0.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Description:
 lybniz - mathematical function graph plotter
Closes: 922812 949376
Changes:
 lybniz (3.0.4-1) unstable; urgency=medium
 .
   * New upstream release. Closes: #922812, #949376.
 - applies debian patch lybniz.desktop.diff
 - builds for python3
   * Debhelper compatibility level 12: debhelper-compat (= 12)
   * Standards-Version: 4.4.1
   * debian/source/format: 3.0 (quilt)
   * update Homepage to https://github.com/thomasfuhringer/lybniz
   * update Vcs tags to https://salsa.debian.org/science-team/lybniz
   * maintain under Debian Science Team.
   * use dh to build package
   * Build-Depends: python3-cairo, python3-gi, gir1.2-gdkpixbuf-2.0,
  gir1.2-glib-2.0, gir1.2-gtk-3.0, gir1.2-pango-1.0
   * drop Build-Depends: python-gtk2, python-gnome2 (access to Gtk
 provided via python3-gi and gir1.2-gtk-3.0)
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Accepted vtkplotter 2020.0.2+dfsg1-1 (source) into unstable

[Drew Parsons]

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Date: Wed, 22 Jan 2020 12:00:41 +0800
Source: vtkplotter
Architecture: source
Version: 2020.0.2+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 vtkplotter (2020.0.2+dfsg1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Standards-Version: 4.5.0
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Bug#949569: ITP: vtkplotter-examples -- Examples set for vtkplotter

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: vtkplotter-examples
  Version : 2020.0.2
  Upstream Author : Marco Musy 
* URL : https://github.com/marcomusy/vtkplotter-examples
* License : MIT
  Programming Lang: Python
  Description : Examples set for vtkplotter

Repository for the set of more than 300 examples for vtkplotter.
Documentation can be found at https://vtkplotter.embl.es/

Search and run any of the examples with:
  vtkplotter --list
  vtkplotter -i -r gyroscope2

These examples were originally packaged with the vtkplotter package
and have recently been split out into a separate repository.

To be maintained alongside vtkplotter by the Debian Science team.

Accepted rclone 1.50.2-1 (source) into experimental

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 22 Jan 2020 10:19:27 +0800
Source: rclone
Architecture: source
Version: 1.50.2-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Go Packaging Team 

Changed-By: Drew Parsons 
Changes:
 rclone (1.50.2-1) experimental; urgency=medium
 .
   * Team upload.
   * New upstream release.
 - applies 0006-Adapt-script-to-use-python3.patch
 - Build-Depends:
 golang-github-azure-azure-pipeline-go-dev (>= 0.2.2),
 golang-github-youmark-pkcs8-dev
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Accepted golang-github-azure-azure-pipeline-go 0.2.2-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Tue, 21 Jan 2020 19:50:00 +0800
Source: golang-github-azure-azure-pipeline-go
Architecture: source
Version: 0.2.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-azure-azure-pipeline-go (0.2.2-2) unstable; urgency=medium
 .
   * Team upload.
   * golang-github-azure-azure-pipeline-go-dev Depends:
   golang-github-mattn-go-ieproxy-dev,
   golang-github-pkg-errors-dev
   * Standards-Version: 4.5.0
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Accepted golang-github-mattn-go-ieproxy 0.0~git20191113.7c0f686-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Tue, 21 Jan 2020 19:41:44 +0800
Source: golang-github-mattn-go-ieproxy
Architecture: source
Version: 0.0~git20191113.7c0f686-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-mattn-go-ieproxy (0.0~git20191113.7c0f686-2) unstable; 
urgency=medium
 .
   * Standards-Version: 4.5.0
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Accepted golang-github-youmark-pkcs8 1.1-2 (source) into unstable

[Drew Parsons]

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Date: Tue, 21 Jan 2020 19:04:26 +0800
Source: golang-github-youmark-pkcs8
Architecture: source
Version: 1.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-youmark-pkcs8 (1.1-2) unstable; urgency=medium
 .
   * Standards-Version: 4.5.0
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Accepted golang-github-azure-azure-pipeline-go 0.2.2-1 (source) into unstable

[Drew Parsons]

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Date: Tue, 21 Jan 2020 09:27:31 +0800
Source: golang-github-azure-azure-pipeline-go
Architecture: source
Version: 0.2.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-azure-azure-pipeline-go (0.2.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release
 - Build-Depends: golang-github-mattn-go-ieproxy-dev,
golang-github-pkg-errors-dev
   * Standards-Version: 4.4.1
   * debhelper compatibility level 12: debhelper-compat (= 12)
   * mark golang-github-azure-azure-pipeline-go-dev as Multi-Arch: foreign
   * build with dh --builddirectory=_build
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Accepted golang-github-youmark-pkcs8 1.1-1 (source all) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Fri, 10 Jan 2020 23:32:21 +0800
Source: golang-github-youmark-pkcs8
Binary: golang-github-youmark-pkcs8-dev
Architecture: source all
Version: 1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Description:
 golang-github-youmark-pkcs8-dev - Go package to parse and convert private keys 
in PKCS#8 format (li
Closes: 948586
Changes:
 golang-github-youmark-pkcs8 (1.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #948586)
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Accepted golang-github-mattn-go-ieproxy 0.0~git20191113.7c0f686-1 (source all) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 11 Jan 2020 00:32:20 +0800
Source: golang-github-mattn-go-ieproxy
Binary: golang-github-mattn-go-ieproxy-dev
Architecture: source all
Version: 0.0~git20191113.7c0f686-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Description:
 golang-github-mattn-go-ieproxy-dev - Go package to detect the proxy settings 
on Windows platform (libr
Closes: 948592
Changes:
 golang-github-mattn-go-ieproxy (0.0~git20191113.7c0f686-1) unstable; 
urgency=medium
 .
   * Initial release (Closes: #948592)
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Bug#949376: ITP: lybniz -- mathematical function graph plotter

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: lybniz
  Version : 3.0.4
  Upstream Author : Thomas Führinger, Sam Tygier
* URL : https://github.com/thomasfuhringer/lybniz
* License : BSD
  Programming Lang: Python
  Description : mathematical function graph plotter

 Lybniz is a simple desktop graph plotter. It can currently plot three
 functions and allows you to navigate the plot. Functions are entered
 in Python notation.

The lybniz package had not been maintained and bitrot out of the
archive.

But development has continued upstream, with v3 supporting python3 and
Gtk-3.

The Debian Science Team is a suitable venue for team maintenance.

Accepted packmol 20.010-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 20 Jan 2020 10:49:33 +0800
Source: packmol
Architecture: source
Version: 20.010-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Changes:
 packmol (20.010-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted sphinx-click 2.3.1-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Mon, 20 Jan 2020 09:18:25 +0800
Source: sphinx-click
Architecture: source
Version: 2.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Drew Parsons 
Changes:
 sphinx-click (2.3.1-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted avogadro 1.91.0-1 (source amd64) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 31 Dec 2019 11:20:13 +1100
Source: avogadro
Binary: avogadro avogadro-dbgsym
Architecture: source amd64
Version: 1.91.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Description:
 avogadro   - Molecular Graphics and Modelling System
Changes:
 avogadro (1.91.0-1) unstable; urgency=medium
 .
   * Team upload.
   * update debian/watch to new upstream git repo at
 https://github.com/OpenChemistry/avogadroapp
   * New upstream release.
 - update debian/copyright to BSD-3-clause and
   Source: https://github.com/OpenChemistry/avogadroapp
 - drop deprecated patches:
 boost148.patch
 eigen3.patch
 eigen3_lib.patch
 gcc-version.diff
 libmsymfloat.patch
 libsymspg.patch
 link_to_libgl2ps.patch
   * provide avogadro package only.
 python3-avogadro, libavogadro-dev, libavogadro2-1 moved to
 avogadrolibs. avogadro-data is deprecated.
   * Build-Depends: libavogadro-dev (>= 1.90)
   * Build-Depends: libhdf5-dev, qtbase5-dev
   * configure with Avogadro_ENABLE_RPC=OFF (MoleQueue is not available)
   * Standards-Version: 4.4.1
   * debhelper compatibility level 12: debhelper-compat (= 12)
   * drop menu entry (supplied sufficiently by desktop entry,
 see Debian Policy 9.6))
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Accepted xhtml2pdf 0.2.2-5 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 17 Jan 2020 21:36:40 +0800
Source: xhtml2pdf
Architecture: source
Version: 0.2.2-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Python Modules Team 

Changed-By: Drew Parsons 
Closes: 948788
Changes:
 xhtml2pdf (0.2.2-5) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Debian Janitor ]
   * debian/copyright: use spaces rather than tabs to start continuation
 lines.
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
 .
   [ Drew Parsons ]
   * debian/patches/use_html_not_cgi.patch replaces deprecated
 cgi.escape with html.escape. Closes: #948788.
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Accepted avogadrolibs 1.92.1-5 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 17 Jan 2020 18:41:21 +0800
Source: avogadrolibs
Architecture: source
Version: 1.92.1-5
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Closes: 948769
Changes:
 avogadrolibs (1.92.1-5) unstable; urgency=medium
 .
   * mark libavogadro2-1 as Multi-Arch: same,
 and libavogadro-doc as Multi-Arch: foreign
   * Depends: openbabel not libopenbabel-dev. Closes: #948769.
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Accepted python-vispy 0.6.4-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 17 Jan 2020 18:32:32 +0800
Source: python-vispy
Architecture: source
Version: 0.6.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 948837
Changes:
 python-vispy (0.6.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
 - Build-Depends: python3-setuptools-scm
   * debian patch workaround_pip_allow-hosts_error.patch
 drops setuptools_scm_git_archive from setup_requires in setup.py,
 to avoid a pip error emitted by setuptools (distutils):
   "`allow-hosts` option is not supported when using pip"
   * build docs against default version of python3. Closes: #948837.
   * python-vispy-doc Depends: ${sphinxdoc:Depends}
   * Standards-Version: 4.4.1
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Accepted slepc 3.12.2+dfsg1-1 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Fri, 17 Jan 2020 13:02:46 +0800
Source: slepc
Architecture: source
Version: 3.12.2+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 slepc (3.12.2+dfsg1-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted petsc 3.12.3+dfsg1-1 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Thu, 16 Jan 2020 13:12:24 +0800
Source: petsc
Architecture: source
Version: 3.12.3+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 petsc (3.12.3+dfsg1-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted python-dmsh 0.1.6-2 (source) into unstable

[Drew Parsons]

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Hash: SHA256

Format: 1.8
Date: Thu, 16 Jan 2020 12:56:17 +0800
Source: python-dmsh
Architecture: source
Version: 0.1.6-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 948453
Changes:
 python-dmsh (0.1.6-2) unstable; urgency=medium
 .
   * debian patch test_no_perfplot.patch drops use of perfplot in
 test_speed.py. perfplot is not available (not yet packaged).
 Closes: #948453.
   * allow-stderr in debian/tests to allow for log messages to stderr
 e.g. "Matplotlib is currently using agg" with MPLBACKEND=Agg
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Bug#948699: ITP: pytest-mpi -- a plugin for pytest testing MPI-related code

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: pytest-mpi
  Version : 0.3
  Upstream Author : James Tocknell
* URL : https://github.com/aragilar/pytest-mpi
* License : BSD
  Programming Lang: Python
  Description : a plugin for pytest testing MPI-related code

pytest-mpi provides a number of things to assist with using pytest
with MPI-using code, specifically:
 - Displaying of the current MPI configuration (e.g. the MPI
 version, the number of processes)
 - Sharing temporary files/folders across the MPI processes
 - Markers which allow for skipping or xfailing tests
based on whether the tests are being run under MPI

Further documentation can be found at https://pytest-mpi.readthedocs.io.


This plugin is required by future releases of h5py to run h5py tests
on MPI functionality, see https://github.com/h5py/h5py/pull/1255

To be maintained under the Debian Python Modules Team, alongside pytest.

Accepted mpi4py 3.0.3-3 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 11 Jan 2020 19:34:48 +0800
Source: mpi4py
Architecture: source
Version: 3.0.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 mpi4py (3.0.3-3) unstable; urgency=medium
 .
   * Team upload.
   * restore installation of python3-dbg module libs in python3-mpi4py-dbg
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Accepted golang-github-huandu-xstrings 1.2.1-1 (source) into unstable

[Drew Parsons]

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Date: Sat, 11 Jan 2020 15:12:44 +0800
Source: golang-github-huandu-xstrings
Architecture: source
Version: 1.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-huandu-xstrings (1.2.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Standards-Version: 4.4.1
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Accepted golang-github-ncw-swift 1.0.49-1 (source) into unstable

[Drew Parsons]

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Date: Sat, 11 Jan 2020 01:33:27 +0800
Source: golang-github-ncw-swift
Architecture: source
Version: 1.0.49-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 

Changed-By: Drew Parsons 
Changes:
 golang-github-ncw-swift (1.0.49-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
   * Standards-Version: 4.4.1
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Accepted golang-github-bradfitz-iter 0.0~git20191230.e8f45d3-1 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Sat, 11 Jan 2020 01:44:18 +0800
Source: golang-github-bradfitz-iter
Architecture: source
Version: 0.0~git20191230.e8f45d3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-bradfitz-iter (0.0~git20191230.e8f45d3-1) unstable; 
urgency=medium
 .
   * New upstream git version.
   * Standards-Version: 4.4.1
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Accepted golang-github-koofr-go-koofrclient 0.0~git20190724.8e5366d-1 (source) into unstable

[Drew Parsons]

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Date: Sat, 11 Jan 2020 01:20:32 +0800
Source: golang-github-koofr-go-koofrclient
Architecture: source
Version: 0.0~git20190724.8e5366d-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-koofr-go-koofrclient (0.0~git20190724.8e5366d-1) unstable; 
urgency=medium
 .
   * New upstream version in git
   * Standards-Version: 4.4.1
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Accepted golang-github-koofr-go-httpclient 0.0~git20190818.e0dc8fd-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 11 Jan 2020 01:08:40 +0800
Source: golang-github-koofr-go-httpclient
Architecture: source
Version: 0.0~git20190818.e0dc8fd-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team 
Changed-By: Drew Parsons 
Changes:
 golang-github-koofr-go-httpclient (0.0~git20190818.e0dc8fd-1) unstable; 
urgency=medium
 .
   * New upstream git.
   * Standards-Version: 4.4.1
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Bug#948592: ITP: golang-github-mattn-go-ieproxy --

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-mattn-go-ieproxy
  Version : 0.0~git20191113.7c0f686-1
  Upstream Author : mattn, oliverpool, Adele Reed
* URL : https://github.com/mattn/go-ieproxy
* License : MIT
  Programming Lang: Go
  Description : Go package to detect the proxy settings on Windows platform

 ieproxy Go package to detect the proxy settings on Windows platform.
 .
 The settings are initially attempted to be
 read from the WinHttpGetIEProxyConfigForCurrentUser DLL call
 
(https://docs.microsoft.com/en-us/windows/desktop/api/winhttp/nf-winhttp-winhttpgetieproxyconfigforcurrentuser),
 but falls back to the registry
 (CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Internet Settings)
 in the event the DLL call fails.

Required by golang-github-azure-azure-pipeline-go 0.2.2,
which is required by rclone 1.50.2

To be maintained under Debian Go Team.

Bug#948586: ITP: golang-github-youmark-pkcs8 -- Go package to parse and convert private keys in PKCS#8 format, as defined in RFC5208 and RFC5958

[Drew Parsons]

Package: wnpp
Severity: wishlist
Owner: Drew Parsons 

* Package name: golang-github-youmark-pkcs8
  Version : 1.1
  Upstream Author : Yutong Wang (youmark)
* URL : https://github.com/youmark/pkcs8
* License : MIT
  Programming Lang: Go
  Description : Go package to parse and convert private keys in PKCS#8 
format, as defined in RFC5208 and RFC5958

OpenSSL can generate private keys in both "traditional format" and
PKCS#8 format. Newer applications are advised to use more secure
PKCS#8 format. Go standard crypto package provides a function to parse
private key in PKCS#8 format. There is a limitation to this function.
It can only handle unencrypted PKCS#8 private keys. To use this
function, the user has to save the private key in file without
encryption, which is a bad practice to leave private keys unprotected
on file systems. In addition, Go standard package lacks the functions
to convert RSA/ECDSA private keys into PKCS#8 format.

pkcs8 package fills the gap here. It implements functions to process
private keys in PKCS#8 format, as defined in RFC5208 and RFC5958. It
can handle both unencrypted PKCS#8 PrivateKeyInfo format and
EncryptedPrivateKeyInfo format with PKCS#5 (v2.0) algorithms.

This package is required by rclone 1.50.2.

It will be maintained under the Debian Go Team.

Accepted mpi4py 3.0.3-2 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 10 Jan 2020 15:33:23 +0800
Source: mpi4py
Architecture: source
Version: 3.0.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 937088
Changes:
 mpi4py (3.0.3-2) unstable; urgency=medium
 .
   * Team upload.
   * drop python-mpi4py (remove python2). Closes: #937088.
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Accepted vtkplotter 2020.0.1+dfsg1-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 10 Jan 2020 13:29:44 +0800
Source: vtkplotter
Architecture: source
Version: 2020.0.1+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 vtkplotter (2020.0.1+dfsg1-1) unstable; urgency=medium
 .
   * New upstream release.
 - no longer provides examples: drop python3-vtkplotter-examples
 - vtkconvert is now provided as vtkplotter-convert
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Accepted armci-mpi 0.3.1-beta-1exp1 (source) into experimental

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 03 Jan 2020 12:36:33 +1100
Source: armci-mpi
Architecture: source
Version: 0.3.1-beta-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 armci-mpi (0.3.1-beta-1exp1) experimental; urgency=medium
 .
   * Team upload.
   * update debian/watch to watch github tag releases
   * New upstream release.
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Accepted lammps 20191120+dfsg1-1 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 03 Jan 2020 11:25:33 +1100
Source: lammps
Architecture: source
Version: 20191120+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 lammps (20191120+dfsg1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream patch release 20 November 2019.
   * rename debian patches build_docs_direct.patch as build_docs.patch:
 use system sphinx to build docs. Build-Depends: virtualenv.
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Accepted avogadrolibs 1.92.1-4 (source) into unstable

[Drew Parsons]

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Date: Tue, 31 Dec 2019 10:31:32 +1100
Source: avogadrolibs
Architecture: source
Version: 1.92.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Changes:
 avogadrolibs (1.92.1-4) unstable; urgency=medium
 .
   * build dir uses DEB_HOST_GNU_TYPE not DEB_HOST_MULTIARCH
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Accepted pygalmesh 0.5.0-3 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Tue, 31 Dec 2019 09:19:05 +1100
Source: pygalmesh
Architecture: source
Version: 0.5.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 947058
Changes:
 pygalmesh (0.5.0-3) unstable; urgency=medium
 .
   * more tolerance relaxing in relax_test_tolerance.patch.
 Closes: #947058.
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Accepted avogadrolibs 1.92.1-3 (source) into unstable

[Drew Parsons]

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Date: Tue, 31 Dec 2019 00:51:38 +1100
Source: avogadrolibs
Architecture: source
Version: 1.92.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Changes:
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 .
   * configure to build documentation only for arch-indep builds
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Accepted avogadrolibs 1.92.1-2 (source amd64 all) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 30 Dec 2019 11:48:13 +1100
Source: avogadrolibs
Binary: avogadro-utils avogadro-utils-dbgsym libavogadro-dev libavogadro-doc 
libavogadro2-1 libavogadro2-1-dbgsym python3-avogadro
Architecture: source amd64 all
Version: 1.92.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Description:
 avogadro-utils - Molecular Graphics and Modelling System (library)
 libavogadro-dev - Molecular Graphics and Modelling System (development files)
 libavogadro-doc - Molecular Graphics and Modelling System (lib documentation)
 libavogadro2-1 - Molecular Graphics and Modelling System (library)
 python3-avogadro - Molecular Graphics and Modelling System (Python 3 module)
Closes: 942397
Changes:
 avogadrolibs (1.92.1-2) unstable; urgency=medium
 .
   * debian/copyright: explicitly declare licences of i18n .po
 translation files.
 .
 avogadrolibs (1.92.1-1) unstable; urgency=low
 .
   * Initial release. (Closes: #942397)
 - This is Avogadro 2, which is a rewrite of the original Avogadro.
   Hence name binary library package as libavogadro2-1 to
   distinguish from the older libavogadro1.
 - utility programs provided in avogadro-utils:
 avobabel
 avocjsontocml
 bodrparse
 encodefile
 qube
 resdataparse
 - documentation for libavogadro provided in libavogadro-doc
   * debian patch fix_spglib_include_path.patch fixes path to spglib.h
   * debian patch build_python3.patch enforces a Python3 build
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Accepted lammps 20190919+dfsg2-2 (source) into unstable

[Drew Parsons]

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Date: Mon, 30 Dec 2019 10:35:45 +1100
Source: lammps
Architecture: source
Version: 20190919+dfsg2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 lammps (20190919+dfsg2-2) unstable; urgency=medium
 .
   * Team upload.
   * mark liblammps0 as Multi-Arch: same
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Accepted pyfftw 0.11.1-4 (source) into unstable

[Drew Parsons]

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Hash: SHA256

Format: 1.8
Date: Mon, 30 Dec 2019 10:00:20 +1100
Source: pyfftw
Architecture: source
Version: 0.11.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 946857
Changes:
 pyfftw (0.11.1-4) unstable; urgency=medium
 .
   * Team upload.
   * debian patch fix_dask_011a808.patch applies upstream commit
 011a808 to fix tests against current dask. Closes: #946857.
   * Standards-Version: 4.4.1
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Accepted lammps 20190919+dfsg2-1 (source all amd64) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 31 Oct 2019 21:51:12 +0800
Source: lammps
Binary: lammps lammps-data lammps-dbgsym lammps-doc lammps-examples 
liblammps-dev liblammps0 liblammps0-dbgsym python3-lammps
Architecture: source all amd64
Version: 20190919+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Description:
 lammps - Molecular Dynamics Simulator
 lammps-data - Molecular Dynamics Simulator. Data (potentials)
 lammps-doc - Molecular Dynamics Simulator (documentation)
 lammps-examples - Molecular Dynamics Simulator (examples)
 liblammps-dev - Molecular Dynamics Simulator (dev files)
 liblammps0 - Molecular Dynamics Simulator (shared library)
 python3-lammps - Molecular Dynamics Simulator
Closes: 924189 925729 936814
Changes:
 lammps (20190919+dfsg2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream patch release 19 Sep 2019. Closes: #925729.
   * move Files-Excluded to Source stanza of debian/copyright.
 Enables mk-origtargz to removed unwanted files in upstream tarball
 - drop examples/log.* (no longer present in upstream tarball)
 - do not exclude doc/utils/sphinx-config from orig tarball.
   Needed to build docs with `make html`.
   sphinx-config/_themes/lammps_theme uses MIT licence.
   * Standards-Version: 4.4.1
   * debhelper compatibility level 12: debhelper-compat (= 12)
   * Build-Depends: python3-all-dev. Closes: #936814.
   * Build-Depends: libvtk7-dev, libhdf5-mpi-dev
   * Build-Depends: libvtk7-qt-dev. Causes USER-VTK to build against
 Qt5 (via vtkGUISupportQt).
   * Debian patch build_docs_direct.patch eliminates virtualenv,
 enabling `make html` to build docs directly. Uses python3 only.
   * provide shared library in liblammps-dev, liblammps0
   * provide python module in python3-lammps (with examples)
 - Debian patch python_lib_soname.patch points the LAMMPS library
   used in lammps.py at soversion .so.0 instead of .so.
   Allows the python module to depend only on liblammps0, otherwise
   liblammps-dev would also have to be installed.
   * provide sample scripts and benchmarks in lammps-examples
 - install in /usr/share/lammps to link to potentials.
   Closes: #924189.
   * emacs mode installed by lammps-data
   * mark -doc, -data, -examples as Multi-Arch: foreign
   * disable dh_dwz on liblammps.so.0 (elf_update failed)
   * Debian patch fix_man.patch fixes section and space delimiter in
 lammps.1.
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Accepted pygalmesh 0.5.0-2 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 28 Dec 2019 10:54:34 +1100
Source: pygalmesh
Architecture: source
Version: 0.5.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Closes: 947058
Changes:
 pygalmesh (0.5.0-2) unstable; urgency=medium
 .
   * debian patch relax_test_tolerance.patch relaxes tolerance in
 test_inr.py to allow successful tests on arm64. Closes: #947058.
   * Standards-Version: 4.4.1
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Accepted dolfin 2019.1.0-10 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 28 Dec 2019 08:25:16 +1100
Source: dolfin
Architecture: source
Version: 2019.1.0-10
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Changes:
 dolfin (2019.1.0-10) unstable; urgency=medium
 .
   * debian patch workaround_matplotlib_broken_API.patch works around
 broken API in matplotlib 3.1: can no longer set axes.aspect to
 'equal' in 3d.
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Accepted petsc4py 3.12.0-4 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Dec 2019 02:03:59 +1100
Source: petsc4py
Architecture: source
Version: 3.12.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 petsc4py (3.12.0-4) unstable; urgency=medium
 .
   * rebuild for testing migration
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Accepted slepc4py 3.12.0-4 (source) into unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Dec 2019 02:28:41 +1100
Source: slepc4py
Architecture: source
Version: 3.12.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 slepc4py (3.12.0-4) unstable; urgency=medium
 .
   * rebuild for testing migration
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Accepted slepc4py 3.12.0-3 (source all amd64) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 24 Dec 2019 12:30:40 +1100
Source: slepc4py
Binary: python-slepc4py-doc python3-slepc4py python3-slepc4py-complex 
python3-slepc4py-complex-dbgsym python3-slepc4py-real 
python3-slepc4py-real-dbgsym
Architecture: source all amd64
Version: 3.12.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Description:
 python-slepc4py-doc - Python bindings for SLEPc libraries: documentation and 
examples
 python3-slepc4py - Python 3 bindings for SLEPc libraries
 python3-slepc4py-complex - Python 3 bindings for SLEPc libraries (complex 
numbers)
 python3-slepc4py-real - Python 3 bindings for SLEPc libraries (real numbers)
Closes: 945621
Changes:
 slepc4py (3.12.0-3) unstable; urgency=medium
 .
   * rename python-slepc4py-docs package as python-slepc4py-doc.
 Closes: #945621.
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Accepted petsc4py 3.12.0-3 (source all amd64) into unstable, unstable

[Drew Parsons]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 24 Dec 2019 11:28:57 +1100
Source: petsc4py
Binary: python-petsc4py-doc python3-petsc4py python3-petsc4py-complex 
python3-petsc4py-complex-dbgsym python3-petsc4py-real 
python3-petsc4py-real-dbgsym
Architecture: source all amd64
Version: 3.12.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Description:
 python-petsc4py-doc - Python bindings for PETSc libraries: documentation and 
examples
 python3-petsc4py - Python 3 bindings for PETSc libraries
 python3-petsc4py-complex - Python 3 bindings for PETSc libraries (complex 
numbers)
 python3-petsc4py-real - Python 3 bindings for PETSc libraries (real numbers)
Closes: 945620
Changes:
 petsc4py (3.12.0-3) unstable; urgency=medium
 .
   * rename python-petsc4py-docs package as python-petsc4py-doc.
 Closes: #945620.
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Accepted python-meshio 3.3.1-1 (source) into unstable

[Drew Parsons]

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Hash: SHA256

Format: 1.8
Date: Sun, 22 Dec 2019 10:23:08 +1100
Source: python-meshio
Architecture: source
Version: 3.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 python-meshio (3.3.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
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Accepted python-dmsh 0.1.6-1 (source) into unstable

[Drew Parsons]

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Hash: SHA256

Format: 1.8
Date: Sun, 22 Dec 2019 10:06:52 +1100
Source: python-dmsh
Architecture: source
Version: 0.1.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 python-dmsh (0.1.6-1) unstable; urgency=medium
 .
   * New upstream release.
   * drop Depends: python3-pypathlib
 (pypathlib is now included in dmsh source)
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Accepted ga 5.7-5 (source) into unstable

[Drew Parsons]

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Date: Sat, 21 Dec 2019 23:45:48 +1100
Source: ga
Architecture: source
Version: 5.7-5
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Drew Parsons 
Changes:
 ga (5.7-5) unstable; urgency=medium
 .
   * Team upload.
   * Patch fix_MPI_errhandler_f1ea520.patch applies upstream commit
 f1ea520 to update MPI errhandler for MPI-3 API.
   * Standards-Version: 4.4.1
   * debhelper compatibility level 12: debhelper-compat (= 12)
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Accepted getdp 3.2.0+dfsg1-1 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Sat, 21 Dec 2019 14:56:13 +1100
Source: getdp
Architecture: source
Version: 3.2.0+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Closes: 934443 936602
Changes:
 getdp (3.2.0+dfsg1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
   * Standards-Version: 4.4.1
   * Build-Depends: debhelper-compat (= 12)
   * Build-Depends: python3-dev. Closes: #936602.
   * Build-Depends: texlive-plain-generic. Closes: #934443.
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Accepted getfem++ 5.3+dfsg1-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Fri, 20 Dec 2019 23:50:04 +1100
Source: getfem++
Architecture: source
Version: 5.3+dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Drew Parsons 
Closes: 943943
Changes:
 getfem++ (5.3+dfsg1-2) unstable; urgency=medium
 .
   * Team upload.
   * debian patch scripts_python3.patch sets bin/extract_doc and
 bin/split_cmdref to python3. Closes: #943943.
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Accepted slepc4py 3.12.0-2 (source) into unstable

[Drew Parsons]

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Format: 1.8
Date: Thu, 19 Dec 2019 11:29:33 +1100
Source: slepc4py
Architecture: source
Version: 3.12.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 slepc4py (3.12.0-2) unstable; urgency=medium
 .
   * upload slepc4py 3.12 to unstable
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