Accepted votca-csg 1.6~rc1-2 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sun, 26 Jan 2020 10:39:21 -0800
Source: votca-csg
Architecture: source
Version: 1.6~rc1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 votca-csg (1.6~rc1-2) unstable; urgency=medium
 .
   * No-changes, source-only upload for transition to testing.
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Accepted votca-tools 1.6~rc1-3 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 26 Jan 2020 10:22:42 -0800
Source: votca-tools
Architecture: source
Version: 1.6~rc1-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Closes: 949774
Changes:
 votca-tools (1.6~rc1-3) unstable; urgency=medium
 .
   * Add Breaks/Replaces: libvotca-tools-dev (<< 1.6~rc1-1) to votca-tools
 for a file move.  (Closes: #949774)
   * Remove old Breaks/Replaces from oldstable and before.
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Accepted votca-csg 1.6~rc1-1 (source amd64 all) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 23 Jan 2020 18:34:42 -0800
Source: votca-csg
Binary: libvotca-csg-dev libvotca-csg6 libvotca-csg6-dbgsym votca-csg 
votca-csg-dbgsym votca-csg-scripts votca-csg-tutorials
Architecture: source amd64 all
Version: 1.6~rc1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 libvotca-csg-dev - VOTCA's coarse-graining library, development kit
 libvotca-csg6 - VOTCA's coarse-graining library
 votca-csg  - VOTCA's coarse-graining engine
 votca-csg-scripts - VOTCA's coarse-graining scripts
 votca-csg-tutorials - VOTCA's coarse-graining tutorials
Closes: 949669
Changes:
 votca-csg (1.6~rc1-1) unstable; urgency=medium
 .
   * New upstream release candidate.
 - SONAME bump to libvotca-csg6.
 - Discard existing debian/patches/*.patch, incorporated upstream.
   * Increment Depends: on gromacs to >= 2020-2 - minimum 2020 version
 with necessary headers.  (Closes: #949669)
   * d/patches/directory-with-tilde.patch: Fix builds with certain special
 characters in the build path, such as the ~ in "1.6~rc1".
   * Update Standards-Version to 4.5.0, no changes required.
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Accepted votca-tools 1.6~rc1-2 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 23 Jan 2020 18:20:06 -0800
Source: votca-tools
Architecture: source
Version: 1.6~rc1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 votca-tools (1.6~rc1-2) unstable; urgency=medium
 .
   * d/patches/smoothing_test.diff: Cherry-pick from upstream commit at
 <https://github.com/votca/tools/issues/195>, to solve test failures
 at table_test/smoothing_test on many architectures.
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Accepted votca-tools 1.6~rc1-1 (source amd64) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 20 Jan 2020 16:10:53 -0800
Source: votca-tools
Binary: libvotca-tools-dev libvotca-tools6 libvotca-tools6-dbgsym votca-tools 
votca-tools-dbgsym
Architecture: source amd64
Version: 1.6~rc1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 libvotca-tools-dev - VOTCA's tools library, development kit
 libvotca-tools6 - VOTCA's tools library
 votca-tools - VOTCA's tools library, helper binaries
Changes:
 votca-tools (1.6~rc1-1) unstable; urgency=medium
 .
   * New upstream release candidate.
 - Rename libvotca-tools5 to libvotca-tools6.
 - Remove B-D on libsqlite3-dev, no longer needed.
   * Add new 'votca-tools' (binary) package for helper tools.  Add B-D on
 dh-python and python3 for votca_compare script.
   * Update to Standards-Version 4.5.0, no changes required.
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libvotca-tools-dev_1.6~rc1-1_amd64.deb
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libvotca-tools6-dbgsym_1.6~rc1-1_amd64.deb
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libvotca-tools6_1.6~rc1-1_amd64.deb
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votca-tools_1.6~rc1-1_amd64.buildinfo
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votca-tools_1.6~rc1-1_amd64.deb

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Accepted gromacs 2020-2 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Mon, 20 Jan 2020 18:44:53 -0800
Source: gromacs
Architecture: source
Version: 2020-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020-2) unstable; urgency=medium
 .
   * Upload to unstable.
   * debian/man/mdrun_mpi.*.1: Update from gmx-mdrun(1).
   * Install legacy API (GMX_INSTALL_LEGACY_API) from non-MPI builds, for
 compatibility with votca-csg requiring gromacs/version.h.
   * Bump Standards-Version to 4.5.0, no changes required.
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Accepted gromacs 2020-1 (source) into experimental

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sun, 05 Jan 2020 11:51:57 -0800
Source: gromacs
Architecture: source
Version: 2020-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020-1) experimental; urgency=medium
 .
   * New upstream release.
   * debian/patches/doxygen.patch: Update with a workaround for a build
 failure using doxygen >= 1.8.16.
   * Set GMX_VERSION_STRING_OF_FORK to a combination of the distro name
 (Debian, Ubuntu, ...) and package version number. Add Build-Depends
 on lsb-release for the tools providing the distro information.
   * debian/copyright: Update.
   * debian/gromacs-data.lintian-overrides: Add override for false
 positives on "manpage-without-executable" tag.
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Accepted gromacs 2020~beta3-1 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Tue, 03 Dec 2019 20:01:45 -0800
Source: gromacs
Architecture: source
Version: 2020~beta3-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020~beta3-1) experimental; urgency=medium
 .
   * New upstream beta release.
   * Remove last four patches, incorporated upstream.
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Accepted votca-csg 1.5.1-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 29 Nov 2019 12:36:59 -0800
Source: votca-csg
Architecture: source
Version: 1.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Closes: 933801
Changes:
 votca-csg (1.5.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Update Standards-Version to 4.4.1 and debhelper to version 12.  No
 changes required.
   * Add Depends on libboost-{filesystem, program-options, system}-dev to
 libvotca-csg-dev.
   * debian/watch: Upgrade to v4 and add check for tutorials component.
   * debian/patches/python3-transition.patch: Cherry-pick latest files from
 upstream git in share/scripts/inverse and tutorials/ for the python2 ->
 python3 transition.  (Closes: #933801)
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Accepted votca-tools 1.5.1-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 29 Nov 2019 10:24:02 -0800
Source: votca-tools
Architecture: source
Version: 1.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 votca-tools (1.5.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Update to Standards-Version 4.4.1 and debhelper 12.  No changes
 required.
   * Add dependencies on lib{boost-filesystem, boost-program-options,
 eigen1}-dev to libvotca-tools-dev.
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Accepted gromacs 2020~beta2-2 (source) into experimental

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Thu, 28 Nov 2019 14:19:39 -0800
Source: gromacs
Architecture: source
Version: 2020~beta2-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020~beta2-2) experimental; urgency=medium
 .
   * Additional patch relax-bd-test-tolerances.patch for amd64 test
 failures. <https://gerrit.gromacs.org/c/gromacs/+/14479>
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Accepted gromacs 2020~beta2-1 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Sat, 23 Nov 2019 11:56:52 -0800
Source: gromacs
Architecture: source
Version: 2020~beta2-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020~beta2-1) experimental; urgency=medium
 .
   * New upstream beta release.
   * Add patches from <http://redmine.gromacs.org/issues/3205>:
 - hwloc-cache-size-detection.patch from revision c5a01a73
 - relax-listed-forces-test-tolerances.patch from
   <https://gerrit.gromacs.org/c/gromacs/+/14319>
 - updated-physical-constants.patch from revision 536052b4
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Accepted gromacs 2020~beta1-2 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Wed, 16 Oct 2019 18:05:33 -0700
Source: gromacs
Architecture: source
Version: 2020~beta1-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2020~beta1-2) experimental; urgency=medium
 .
   * debian/patches/series: Re-enable disable-cpuinfotest.patch, as it's
 still relebant on arm64/mips* (possibly others).
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Accepted gromacs 2020~beta1-1 (source all amd64) into experimental, experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 14 Oct 2019 18:56:44 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dbgsym gromacs-mpich gromacs-mpich-dbgsym 
gromacs-openmpi gromacs-openmpi-dbgsym libgromacs-dev libgromacs5 
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Architecture: source all amd64
Version: 2020~beta1-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
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 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs5 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2020~beta1-1) experimental; urgency=medium
 .
   * New upstream beta release.
 - SONAME bump: libgromacs4 -> libgromacs5.
   * debian/control: Update B-D-Indep from python-sphinx (scheduled for
 removal soon) to python3-sphinx.
   * debian/rules: Add SIMD support for x32.
   * debian/patches/series: Remove disable-cpuinfotest.patch as a test
 to see if the problem is now solved on less-common architectures.
   * debian/copyright: Update.
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Accepted gromacs 2019.4-1 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Wed, 02 Oct 2019 13:31:30 -0700
Source: gromacs
Architecture: source
Version: 2019.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019.4-1) unstable; urgency=medium
 .
   [ Steffen Möller ]
   * debian/upstream/metadata: Added ref to conda.
 .
   [ Nicholas Breen ]
   * New upstream release.
   * debian/control: Remove Breaks/Conflicts/Replaces older than oldstable.
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Accepted grace 1:5.1.25-7 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Thu, 15 Aug 2019 20:00:53 -0700
Source: grace
Architecture: source
Version: 1:5.1.25-7
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen 
Changed-By: Nicholas Breen 
Closes: 934662
Changes:
 grace (1:5.1.25-7) unstable; urgency=medium
 .
   [ Ondřej Nový ]
   * d/copyright: Use https protocol in Format field
   * d/changelog: Remove trailing whitespaces
 .
   [ Nicholas Breen ]
   * d/patches/font-extension-t1.diff: Search for .t1 as a font file
 extension (as seen in newer versions of Ghostscript), in addition to
 the traditional .pfa/.pfb extensions.  Thanks to Carlo Segre for the
 thorough bug report.  (Closes: #934662)
   * Update to Standards-Version 4.4.0 and debhelper compat 12.
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Accepted gromacs 2019.3-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Fri, 12 Jul 2019 18:57:43 -0700
Source: gromacs
Architecture: source
Version: 2019.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019.3-2) unstable; urgency=medium
 .
   * debian/patches/arm64-disable-numa-test.patch: On *some* arm64 boards,
 hwloc (1.x) reports zero NUMA cache sizes, causing a test failure.
 This disables that test on arm64 only.
 Upstream: <https://redmine.gromacs.org/issues/2366>
   * debian/patches/mpi-tests-localhost.patch: Run MPICH tests on "localhost"
 so that they pass in certain network-restricted environments, such as
 pbuilder with USENETWORK=NO set.  (buildd always worked fine.)
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Accepted gromacs 2019.3-1 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Tue, 09 Jul 2019 21:09:26 -0700
Source: gromacs
Architecture: source
Version: 2019.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019.3-1) unstable; urgency=medium
 .
   * New upstream release.
   * Bump debhelper compat version to 12 and Standards-Version to 4.4.0.
   * debian/rules: Add dh_strip_nondeterminism and dh_dwz calls.  Remove
 CMAKE_SKIP_RPATH workaround, no longer needed.
   * debian/copyright: Housekeeping update.
   * debian/*.lintian-overrides: Permit CONECT spelling, from the PDB file
 format.
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Accepted gromacs 2019.1-1 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 17 Feb 2019 09:22:14 -0800
Source: gromacs
Architecture: source
Version: 2019.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019.1-1) unstable; urgency=medium
 .
   * New upstream bugfix release.
   * On x32 only, set openmpi tests to non-failing.  They pass, but as of
 openmpi >= 3.1.3~rc1, timeout on teardown.  3.1.2 works cleanly.
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Accepted votca-tools 1.5-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Thu, 07 Feb 2019 18:57:53 -0800
Source: votca-tools
Architecture: source
Version: 1.5-2
Distribution: unstable
Urgency: high
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Closes: 921665
Changes:
 votca-tools (1.5-2) unstable; urgency=high
 .
   * libvotca-tools-dev: Additionally set Breaks/Replaces on libvotca-tools3.
 (Closes: #921665)
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Accepted votca-csg 1.5-3 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Thu, 07 Feb 2019 18:59:36 -0800
Source: votca-csg
Architecture: source
Version: 1.5-3
Distribution: unstable
Urgency: high
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Closes: 921664
Changes:
 votca-csg (1.5-3) unstable; urgency=high
 .
   * libvotca-csg-dev: Additionally set Breaks/Replaces on libvotca-csg3.
 (Closes: #921664)
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Accepted votca-csg 1.5-2 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sun, 03 Feb 2019 19:41:04 -0800
Source: votca-csg
Architecture: source
Version: 1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 votca-csg (1.5-2) unstable; urgency=medium
 .
   * Add missing B-D on libeigen3-dev.
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Accepted votca-csg 1.5-1 (source i386 all) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 02 Feb 2019 14:25:56 -0800
Source: votca-csg
Binary: libvotca-csg-dev libvotca-csg5 libvotca-csg5-dbgsym votca-csg 
votca-csg-dbgsym votca-csg-scripts votca-csg-tutorials
Architecture: source i386 all
Version: 1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 libvotca-csg-dev - VOTCA's coarse-graining library, development kit
 libvotca-csg5 - VOTCA's coarse-graining library
 votca-csg  - VOTCA's coarse-graining engine
 votca-csg-scripts - VOTCA's coarse-graining scripts
 votca-csg-tutorials - VOTCA's coarse-graining tutorials
Changes:
 votca-csg (1.5-1) unstable; urgency=medium
 .
   * New upstream release.
 - Remove solvematlab-syntax.patch, incorporated upstream.
   * Adding myself to uploaders.
   * SONAME bump, rename *-csg4 to *-csg5.
   * Move man pages to libvotca-csg-dev, to allow coinstallability of
 different versions of the library; set Breaks/Replaces on the old
 version of libvotca-csg4 due to the file overlap.
   * Update Standards-Version to 4.3.0.
   * Set Rules-Requires-Root: no.
   * debian/patches/tutorial-script-shebang.path: apply leading shebang to
 two tutorial scripts in the LJ1-LJ2 directory.
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Accepted votca-tools 1.5-1 (source amd64) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 01 Feb 2019 18:06:30 -0800
Source: votca-tools
Binary: libvotca-tools-dev libvotca-tools5 libvotca-tools5-dbgsym
Architecture: source amd64
Version: 1.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 libvotca-tools-dev - VOTCA's tools library, development kit
 libvotca-tools5 - VOTCA's tools library
Changes:
 votca-tools (1.5-1) unstable; urgency=medium
 .
   * New upstream release.
 - Rename libvotca-tools4 to libvotca-tools5.
   * Add myself to uploaders.
   * Enable new test suite.
   * Add Build-Depends on libeigen3-dev and, for the tests,
 libboost-test-dev.
   * Minor housekeeping: update copyright years, update Standards-Version,
 set Rules-Requires-Root: no.
   * Move man pages to -dev package, allowing coinstallability of future
 library versions.
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Bug#921202: ITP: votca-xtp -- Exciton transport simulation for VOTCA

[Nicholas Breen]

Package: wnpp
Severity: wishlist
Owner: Debichem Team 

* Package name: votca-xtp
  Version : 1.5.0
  Upstream Author : Christoph Junghans  and others
* URL : http://www.votca.org/
* License : Apache 2.0
  Programming Lang: C++
  Description : Exciton transport simulation for VOTCA

VOTCA is a software package which focuses on the analysis of molecular
dynamics data, the development of systematic coarse-graining techniques as
well as methods used for simulating microscopic charge transport in
disordered semiconductors.
 .
xtp is Votca's exciton transport simulation engine.


This extends the existing src:votca-tools and src:votca-csg, and will be
maintained by the Debichem team.

Accepted gromacs 2019-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Fri, 01 Feb 2019 21:26:58 -0800
Source: gromacs
Architecture: source
Version: 2019-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019-2) unstable; urgency=medium
 .
   * Fix error in update-alternatives call for bash completion.
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Accepted gromacs 2019-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 01 Jan 2019 20:03:55 -0800
Source: gromacs
Architecture: source
Version: 2019-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Changes:
 gromacs (2019-1) unstable; urgency=medium
 .
   * New upstream final release - return uploads to unstable.
   * Install bash completion files.  Add completion files for the MPI
 variants to the update-alternatives group.
   * Remove unused GMXRC* files and the /usr/share/gromacs/shell-specific
 directory, as they are unneeded with binaries in the standard locations.
   * Bump Standards-Version to 4.3.0, no changes required.
   * Drop B-D on libtinyxml-dev, as a specific version of libtinyxml2 is
 used instead only for testing, not in shipped binaries.
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Accepted gromacs 2019~rc1-1 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 16 Dec 2018 09:56:11 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs4 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2019~rc1-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs4 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2019~rc1-1) experimental; urgency=medium
 .
   * New upstream release candidate.
   * Set debhelper compat 11.
   * Re-enable several previously disabled OpenMPI tests that now work again,
 but set hurd-i386 tests to non-fatal as their failures all seem to be
 from outside sources.
   * control: Point Vcs-Git URL at debian-experimental branch specifically.
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Accepted gromacs 2019~beta3-1 (source all amd64) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 25 Nov 2018 09:17:37 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs4 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source all amd64
Version: 2019~beta3-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs4 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2019~beta3-1) experimental; urgency=medium
 .
   * New upstream beta release.
   * Move libgromacs3.lintian-overrides to libgromacs4.lintian-overrides.
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Accepted gromacs 2018.4-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Nov 2018 16:01:14 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.4-1) unstable; urgency=medium
 .
   * New upstream release.
   * Bump Standards-Version to 4.2.1, no changes required.
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Accepted gromacs 2019~beta2-1 (source all amd64) into experimental, experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 08 Nov 2018 22:06:20 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs4 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source all amd64
Version: 2019~beta2-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs4 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2019~beta2-1) experimental; urgency=medium
 .
   * New upstream beta release, upload to experimental.
 - patches/reproducible-builds.patch and sphinx-version-detect.patch
   removed, equivalent functionality integrated upstream.
 - Other patches rebased.
   * Rename libgromacs3 to libgromacs4 for SONAME increment.
   * CMAKE_SKIP_RPATH causes build failures at the moment, so replace it with
 chrpath after the build.
   * Depend on, and build documentation against, local copy of libjs-mathjax.
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gromacs-dbgsym_2019~beta2-1_amd64.deb
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gromacs-mpich_2019~beta2-1_amd64.deb
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gromacs-openmpi-dbgsym_2019~beta2-1_amd64.deb
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gromacs

Accepted gromacs 2018.3-1 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Thu, 23 Aug 2018 08:55:48 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.3-1) unstable; urgency=medium
 .
   * New upstream release.
   * Bump Standards-Version to 4.2.0, no changes required.
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Accepted gromacs 2018.2-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 17 Jun 2018 16:43:08 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.2-2) unstable; urgency=medium
 .
   * Disable tests on armhf for mpich build; it seems to have a sensitivity
 to where mpich itself was built.
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Accepted gromacs 2018.2-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 16 Jun 2018 10:24:50 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team 
Changed-By: Nicholas Breen 
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.2-1) unstable; urgency=medium
 .
   [ Steffen Möller ]
   * Updated RRID in debian/upstream/metadata.
 .
   [ Nicholas Breen ]
   * New upstream release.
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Accepted mcomix 1.2.1-1.1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 29 May 2018 21:35:28 -0700
Source: mcomix
Binary: mcomix
Architecture: source
Version: 1.2.1-1.1
Distribution: unstable
Urgency: medium
Maintainer: Krzysztof Klimonda 
Changed-By: Nicholas Breen 
Description:
 mcomix - GTK+ image viewer for comic books
Closes: 866440
Changes:
 mcomix (1.2.1-1.1) unstable; urgency=medium
 .
   * Non-maintainer upload.
   * Replace Depends: python-imaging with python-pil.  (Closes: #866440)
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Accepted grace 1:5.1.25-6 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sat, 28 Apr 2018 10:50:28 -0700
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-6
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 grace  - XY graphing and plotting tool
Closes: 727796
Changes:
 grace (1:5.1.25-6) unstable; urgency=medium
 .
   * Move VCS repo to salsa.debian.org.
   * Bump to Standards-Version 4.1.4, debhelper compat 11.
   * Eliminate several hardcoded color settings, moving them to an Xresources
 configuration file, allowing user overrides.  Patch courtesy of Denis
 Danilov.  (Closes: #727796)
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Accepted gromacs 2018.1-4 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sat, 28 Apr 2018 08:25:15 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.1-4) unstable; urgency=medium
 .
   * Additionally exclude MdrunUtilityMpiUnitTests on OpenMPI builds only,
 which fail erratically.
   * Set Rules-Requires-Root: no.
   * patches/sphinx-version-detect.patch: permit identification of newer
 versions of python-sphinx, which changed their --version output.
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Accepted gromacs 2018.1-3 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Tue, 24 Apr 2018 20:01:16 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Closes: 896194
Changes:
 gromacs (2018.1-3) unstable; urgency=medium
 .
   * Exchange patch from 2018.1-2 for a GTEST_FILTER exclusion in rules.
 (Closes: #896194)
   * Bump Standards-Version to 4.1.4.
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Accepted gromacs 2018.1-2 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 22 Apr 2018 14:34:48 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Closes: 896194
Changes:
 gromacs (2018.1-2) unstable; urgency=medium
 .
   * patches/openmpi-disable-gputest.patch: bypass one test on OpenMPI builds
 only, ChangingPinningPolicyRequiresCuda hangs and times out.
 (Closes: #896194)
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Accepted gromacs 2018.1-1 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sat, 31 Mar 2018 10:12:46 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Remove gtest-death-test.patch, incorporated upstream.
   * Moved VCS from alioth to salsa (thanks to Andreas Tille).
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Accepted gromacs 2018-2 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 20 Jan 2018 11:31:44 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018-2) unstable; urgency=medium
 .
   * Extend gtest-death-test.patch to exclude x32.  This addresses #887340
 but is not a complete fix.  Thanks to Aaron Ucko for testing assistance.
   * Increase CTest verbosity level.
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Accepted votca-csg 1.4.1-1 (source amd64 all) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 11 Jan 2018 20:12:52 -0800
Source: votca-csg
Binary: libvotca-csg-dev libvotca-csg4 votca-csg-scripts votca-csg-tutorials 
votca-csg
Architecture: source amd64 all
Version: 1.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libvotca-csg-dev - VOTCA's coarse-graining library, development kit
 libvotca-csg4 - VOTCA's coarse-graining library
 votca-csg  - VOTCA's coarse-graining engine
 votca-csg-scripts - VOTCA's coarse-graining scripts
 votca-csg-tutorials - VOTCA's coarse-graining tutorials
Changes:
 votca-csg (1.4.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
 - Drop CheckCXXLibraryExists.patch, incorporated upstream.
 - Rename libvotca-csg3 to libvotca-csg4.
   * Tighten build dependency on libvotca-tools-dev to a 1.4 version.
   * Add B-D on libgsl-dev.
   * Bump Standards-Version to 4.1.3.
   * debian/patches/solvematlab-syntax.patch: fix syntax error in
 solve_matlab.sh.
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Accepted votca-tools 1.4.1-2 (source amd64) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 11 Jan 2018 16:18:20 -0800
Source: votca-tools
Binary: libvotca-tools-dev libvotca-tools4
Architecture: source amd64
Version: 1.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libvotca-tools-dev - VOTCA's tools library, development kit
 libvotca-tools4 - VOTCA's tools library
Changes:
 votca-tools (1.4.1-2) unstable; urgency=medium
 .
   * Add Breaks/Replaces on libvotca-tools3 due to filename conflicts.
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Accepted votca-tools 1.4.1-1 (source amd64) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 11 Jan 2018 14:23:15 -0800
Source: votca-tools
Binary: libvotca-tools-dev libvotca-tools4
Architecture: source amd64
Version: 1.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libvotca-tools-dev - VOTCA's tools library, development kit
 libvotca-tools4 - VOTCA's tools library
Changes:
 votca-tools (1.4.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
   * Rename libvotca-tools3 to libvotca-tools4.
   * Bump Standards-Version to 4.1.3, no changes required.
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Accepted gromacs 2018-1 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Wed, 10 Jan 2018 22:23:18 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018-1) unstable; urgency=low
 .
   * New upstream release.
 - Remove test_GMX_ALIGNED.patch, incorporated.
 - Update debian/man/*mdrun* man pages.
   * Bump Standards-Version to 4.1.3.
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Accepted gromacs 2018~rc1-3 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Wed, 03 Jan 2018 20:58:25 -0800
Source: gromacs
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gromacs-openmpi
Architecture: source
Version: 2018~rc1-3
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018~rc1-3) experimental; urgency=medium
 .
   * patches/gtest-death-test.patch: disable EXPECT_DEATH tests if
 unavailable on that platform.
   * patches/mdrun-test-timeout.patch: increase timeout for integration test
 (using mdrun) from 120 to 600 seconds, to help prevent termination on
 slower buildds.
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Accepted gromacs 2018~rc1-2 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 27 Dec 2017 12:56:20 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018~rc1-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018~rc1-2) experimental; urgency=medium
 .
   * Apply upstream patch <https://gerrit.gromacs.org/#/c/7395/> to address
 BasedefinitionsTest.GmxAlignedDeclaresAlignedVariable failures on non-
 Intel architectures.
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Accepted gromacs 2018~rc1-1 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 26 Dec 2017 23:10:55 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2018~rc1-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018~rc1-1) experimental; urgency=medium
 .
   * New upstream release candidate.
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Accepted gromacs 2018~beta3-1 (source all amd64) into experimental, experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 24 Dec 2017 10:35:12 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source all amd64
Version: 2018~beta3-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs3 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2018~beta3-1) experimental; urgency=medium
 .
   [ Andreas Tille ]
   * New upstream version (beta2)
   * Moved packaging from SVN to Git
 .
   [ Nicholas Breen ]
   * New upstream release (beta3).
   * Explicitly set MPIEXEC for the two different MPI implementations, to
 prevent mismatches via the alternatives system.  Also B-D on mpich,
 providing /usr/bin/mpiexec.mpich for tests.
   * Update Standards-Version to 4.1.2.
   * Remove obsolete zero byte file lintian overrides.
   * SONAME bump: rename libgromacs2 to libgromacs3.
   * Set GMX_EXTERNAL_ZLIB=ON to prevent it from opportunistically linking
 statically.
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gromacs-mpich_2018~beta3

Accepted gromacs 2016.4-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 17 Sep 2017 10:29:19 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2016.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.4-1) unstable; urgency=medium
 .
   * New upstream release.
   * Bump Standards-Version to 4.1.0.  Set Priority to optional.
   * Drop Multi-Arch: same for libgromacs-dev, it seems to have some per-arch
 conflicts from autogenerated files.
   * Depend on sse2-support [any-i386] | neon-support [armhf], for the minimum
 useful levels of SIMD support on those architectures.  Also enable NEON
 for arm64.
   * Set hardening options BINDNOW and PIE.
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Accepted grace 1:5.1.25-5 (source) into unstable

[Nicholas Breen]

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Date: Fri, 30 Jun 2017 09:16:09 -0700
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-5
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.25-5) unstable; urgency=medium
 .
   * Typo fix in control ("gconf" -> "gconf2").
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Accepted gromacs 2016.3-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 18 Jun 2017 13:32:39 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-mpich 
gromacs-openmpi
Architecture: source
Version: 2016.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.3-2) unstable; urgency=medium
 .
   * Upload to unstable after the stretch release.
   * Remove the old gromacs-dev metapackage, now that it's passed one stable
 release with libgromacs-dev available.  Also remove some old Breaks:
 from well before oldstable.
   * Set Multi-Arch: foreign for gromacs-data, M-A: same for gromacs-dev and
 libgromacs2.
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Accepted grace 1:5.1.25-4 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 18 Jun 2017 13:04:04 -0700
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-4
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 grace  - XY graphing and plotting tool
Closes: 863872
Changes:
 grace (1:5.1.25-4) unstable; urgency=medium
 .
   * Don't run dh_gconf; schemas are now registered by triggers and the
 thumbnailing is an optional feature, so a hard Depends: is not
 desirable.  Instead, add an explicit Suggests: gconf2.
 (Closes: #863872)
   * Update Standards-Version to 4.0.0 and bump debhelper compat level to 10,
 no changes required.
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Accepted gromacs 2016.3-1 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Wed, 15 Mar 2017 21:18:12 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016.3-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.3-1) experimental; urgency=medium
 .
   * New upstream release.
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Accepted gromacs 2016.2-1 (source) into experimental

[Nicholas Breen]

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Format: 1.8
Date: Wed, 08 Feb 2017 17:58:11 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016.2-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.2-1) experimental; urgency=medium
 .
   * New upstream release.  Uploaded to experimental during freeze.
   * Remove dh_shlibdeps workaround introduced in 2016~rc1-3, which is fixed
 via the MPI implementations now.
   * Remove old .NOTPARALLEL restriction when building.
   * Use chrpath to remove RUNPATH on OpenMPI binaries -- see
 <https://github.com/open-mpi/ompi/issues/521>.
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Accepted grace 1:5.1.25-3 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Mon, 23 Jan 2017 09:47:16 -0800
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-3
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 grace  - XY graphing and plotting tool
Closes: 810181
Changes:
 grace (1:5.1.25-3) unstable; urgency=medium
 .
   * Drop B-D alternative on libpng12-dev.  (Closes: #810181)
   * Update Standards-Version to 3.9.8, no changes required.
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Accepted gromacs 2016.1-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 30 Oct 2016 17:12:11 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.1-2) unstable; urgency=medium
 .
   * Disable OpenMPI tests on hurd-i386/kfreebsd-*.  This appears related to
 <https://bugs.debian.org/839387>.
   * Move to debhelper compat version 10, requiring no changes.
   * Drop some obsolete lintian overrides, and add a pair for zero-length
 documentation files not yet shipped.
   * Update debian/copyright.
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Accepted gromacs 2016.1-1 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Fri, 28 Oct 2016 19:14:43 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * rules: Build without SIMD on ppc64.
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Accepted gromacs 2016-3 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Thu, 08 Sep 2016 19:38:53 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Closes: 834991 837061
Changes:
 gromacs (2016-3) unstable; urgency=medium
 .
   * rules: Adjust SIMD detection logic to set GMX_SIMD=None by default, and
 enable it case-by-case only on those architectures where it's safe to
 do so.  (Closes: #834991)
   * Work around OpenMPI 2 test failures:  (Closes: #837061)
 - control: Add openmpi-bin to Build-Depends.
 - rules: Apply the OMPI_MCA_plm_rsh_agent workaround from #494046.
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Accepted votca-csg 1.3.0-3 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Fri, 19 Aug 2016 10:34:58 +0200
Source: votca-csg
Binary: libvotca-csg-dev libvotca-csg3 votca-csg-scripts votca-csg-tutorials 
votca-csg
Architecture: source
Version: 1.3.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libvotca-csg-dev - VOTCA's coarse-graining library, development kit
 libvotca-csg3 - VOTCA's coarse-graining library
 votca-csg  - VOTCA's coarse-graining engine
 votca-csg-scripts - VOTCA's coarse-graining scripts
 votca-csg-tutorials - VOTCA's coarse-graining tutorials
Changes:
 votca-csg (1.3.0-3) unstable; urgency=medium
 .
   * Team upload.
   * debian/patches/CheckCXXLibraryExists.patch: Import patch to fix FTBFS
 with cmake >= 3.4.
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Accepted gromacs 2016-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Fri, 19 Aug 2016 08:52:08 +0200
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Closes: 834786
Changes:
 gromacs (2016-2) unstable; urgency=medium
 .
   * Accept DEB_BUILD_OPTIONS=nocheck for the "build-openmpi" target, which
 was missing and causing m68k build failures.  (Closes: #834786)
   * patches/hurd-disable-numa-test.patch: On hurd-i386 only, this test fails
 for what seem to be detection limitations rather than an actual problem,
 so disable the test conditionally on that architecture.
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Accepted votca-csg 1.3.0-2 (source) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Thu, 18 Aug 2016 09:33:32 +
Source: votca-csg
Binary: libvotca-csg-dev libvotca-csg3 votca-csg-scripts votca-csg-tutorials 
votca-csg
Architecture: source
Version: 1.3.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libvotca-csg-dev - VOTCA's coarse-graining library, development kit
 libvotca-csg3 - VOTCA's coarse-graining library
 votca-csg  - VOTCA's coarse-graining engine
 votca-csg-scripts - VOTCA's coarse-graining scripts
 votca-csg-tutorials - VOTCA's coarse-graining tutorials
Closes: 821734
Changes:
 votca-csg (1.3.0-2) unstable; urgency=medium
 .
   * Team upload.
   * debian/control: change B-D on gromacs-dev to libgromacs-dev.
   * debian/control: Add Replaces/Breaks for clean upgrades from
 libvotca-csg2* to csg[3]*.  (Closes: #821734)
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Accepted gromacs 2016-1 (source) into unstable

[Nicholas Breen]

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Date: Tue, 09 Aug 2016 06:06:12 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016-1) unstable; urgency=low
 .
   * New upstream release, upload to unstable.
 - Remove patches/gmxManageSimd.patch, incorporated upstream.
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Accepted gromacs 5.1.3-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 23 Jul 2016 17:19:36 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 5.1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (5.1.3-1) unstable; urgency=medium
 .
   * New upstream maintenance release.
 - Remove patches/spelling.patch and empty-man7-directory.patch,
   incorporated upstream.
   * control: Update Standards-Version to 3.9.8, no changes required.
   * rules: Apply dh_shlibdeps workaround for #831442.
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Accepted gromacs 2016~rc1-3 (source) into experimental

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sat, 16 Jul 2016 10:17:07 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016~rc1-3
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016~rc1-3) experimental; urgency=medium
 .
   * Workaround for #831442: manually prepend /usr/lib/ to search
 path for dh_shlibdeps -pgromacs-mpich.
   * Set SIMD extensions to VMX on ppc64el, already the minimum requirement
 for that architecture.  Disable SIMD on ppc64 due to lower CPU baseline
 requirements and the lack of double-precision support in basic VMX.
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Accepted gromacs 2016~rc1-2 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 15 Jul 2016 17:44:18 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016~rc1-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016~rc1-2) experimental; urgency=medium
 .
   * OpenMPI now supported on all relevant architectures, so gromacs-openmpi
 changed to "Architecture: any" and arch-specific handling removed.
   * Revive part of the test patch from beta2-2 as disable-cpuinfotest.patch,
 as the issue is not fully resolved upstream.
   * For SSE settings, use DEB_HOST_ARCH_CPU instead of DEB_HOST_ARCH.
   * patches/gmxManageSimd.patch: Correctly pass -msse2 to compiler flags.
 <http://redmine.gromacs.org/issues/2008>
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Accepted gromacs 2016~rc1-1 (source all amd64) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 11 Jul 2016 18:28:25 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 2016~rc1-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016~rc1-1) experimental; urgency=medium
 .
   * First upstream release candidate.
 - Drop patches from beta2-2, incorporated or fixed upstream.
   * Switch from building with libxml2 to libtinyxml.
   * rules: Convert deprecated debhelper -s flags to -a.
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Accepted gromacs 2016~beta2-2 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 17 Jun 2016 06:40:18 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 2016~beta2-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016~beta2-2) experimental; urgency=medium
 .
   * Two patches to address test suits failures:
 - numerically-unstable-gaussian-test.patch: Backport a fix from git
   master branch to address Gaussian test failures on all i386
   platforms.  (http://redmine.gromacs.org/issues/1986)
 - disable-hardware-topology-tests.patch: Two CPU info tests cause hard
   failures that should probably just be warnings, so disable those tests
   for now.  (http://redmine.gromacs.org/issues/1987)
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Accepted gromacs 2016~beta2-1 (source all amd64) into experimental, experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 07 Jun 2016 14:20:10 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs2 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 2016~beta2-1
Distribution: experimental
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs2 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (2016~beta2-1) experimental; urgency=low
 .
   * Beta for major new upstream release.  New date-based versioning system.
 - SONAME bump: package rename, libgromacs1 -> libgromacs2
 - spelling and empty-man7-directory patches incorporated upstream.
 - Refresh other patches.
 - Versioned Depends: on python-sphinx (>= 1.4) for new imgmath
   extension.
   * Update Standards-Version to 3.9.8, no changes required.
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gromacs-o

Accepted gromacs 5.1.2-3 (source) into experimental

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Thu, 21 Apr 2016 17:35:41 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 5.1.2-3
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (5.1.2-3) experimental; urgency=medium
 .
   * Add LD_LIBRARY_PATH overrides to unit tests.
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Accepted gromacs 5.1.2-2 (source) into experimental

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 18 Apr 2016 21:04:31 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 5.1.2-2
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (5.1.2-2) experimental; urgency=medium
 .
   * Run upstream unit tests.  Supports DEB_BUILD_OPTIONS=nocheck bypass.
   * Use rdfind/symlinks to reduce internal duplication in doxygen output.
   * Only build process changes in this upload - uploading to
 experimental as a safety.
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Accepted grace 1:5.1.25-2 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 28 Feb 2016 16:18:39 -0800
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-2
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.25-2) unstable; urgency=medium
 .
   * Remove grace.menu (and grace-menu.xpm) per TC decision #741573.
   * Update Standards-Version to 3.9.7, no changes required.
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Accepted gromacs 5.1.2-1 (source) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 28 Feb 2016 13:31:21 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source
Version: 5.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Closes: 815678
Changes:
 gromacs (5.1.2-1) unstable; urgency=medium
 .
   * New upstream release.
   * Add hppa, s390x, x32 to list of architectures for gromacs-openmpi.
 In turn, increase required version of libopenmpi-dev to >= 1.10.2-7.
   * Add new patches/reproducible-builds.patch for... reproducible builds.
 This is preliminary work and may not be complete.
   * doxygen.patch: work around FTBFS with doxygen >= 1.8.11 (no problems
 with previous 1.8.9).  (Closes: #815678)
   * spelling.patch: Additional fixes.
   * Update Standards-Version to 3.9.7, no changes required.
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gromacs_5.1.2.orig.tar.gz
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gromacs_5.1.2-1.debian.tar.xz
Files:
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gromacs_5.1.2.orig.tar.gz
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gromacs_5.1.2-1.debian.tar.xz

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Accepted gromacs 5.1.1-2 (source all) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 22 Dec 2015 17:18:40 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source all
Version: 5.1.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Closes: 808659
Changes:
 gromacs (5.1.1-2) unstable; urgency=medium
 .
   * Replace compiler calls to "mpic++" with "mpicxx".  MPICH >= 3.2 no
 longer ships mpic++ links.  (Closes: #808659)
   * Remove obsolete build dependency on libgsl0-dev.
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gromacs_5.1.1-2.debian.tar.xz
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Accepted gromacs 5.1.1-1 (source all amd64) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 09 Nov 2015 17:24:02 -0800
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Changes:
 gromacs (5.1.1-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted xbae 4.60.4-7 (source amd64) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 18 Oct 2015 10:52:03 -0700
Source: xbae
Binary: libxbae-dev libxbae4m
Architecture: source amd64
Version: 4.60.4-7
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen <nbr...@debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 libxbae-dev - Xbae Matrix Widget development package
 libxbae4m  - Xbae Matrix Widget libraries
Closes: 797871
Changes:
 xbae (4.60.4-7) unstable; urgency=medium
 .
   * Apply patch for reproducible builds, courtesy of Chris Lamb.
 (Closes: #797871)
   * Update Standards-Version to 3.9.6, no changes required.
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Files:
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Accepted gromacs 5.1-1 (source all amd64) into unstable, unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 01 Oct 2015 17:38:08 -0700
Source: gromacs
Binary: gromacs gromacs-data libgromacs1 libgromacs-dev gromacs-dev 
gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.1-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbr...@debian.org>
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - Dummy package for libgromacs-dev
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
 libgromacs-dev - GROMACS molecular dynamics sim, development kit
 libgromacs1 - GROMACS molecular dynamics sim, shared libraries
Closes: 715934 797744
Changes:
 gromacs (5.1-1) unstable; urgency=low
 .
   * New upstream release.  This release completes the transition to "gmx"
 as the sole binary to replace all the former g_* commands, and the
 compatibility symlinks have been removed.  Standalone mdrun_mpi
 programs in gromacs-mpich and gromacs-openmpi are unaffected.
 - gmx anadock no longer crashes on invalid input.  (Closes: #715934)
   * Some package reshuffling: gromacs-dev becomes libgromacs-dev, and the
 shared library gets split out into libgromacs1.  (Closes: #797744)
 Upload priority set to "low" due to the unusually extensive restructure.
   * Remove gromacs-dev.preinst, only needed for upgrades from well before
 the version in squeeze.
   * Lots more documentation!  PDF manual is built once again, and doxygen
 output for developer use is included.  Several Build-Depends-Indep
 entries added to support this.
 - patches/manpage-hyphenation.patch removed, no longer needed.
 - mdrun_mpi.{mpich,openmpi}.1 updated.
   * debian/control: apply wrap-and-sort.
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Files:
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Re: Re: Adding support for LZIP to dpkg, using that instead of xz, archive wide

[Nicholas Breen]

On Wed, Jul 29, 2015 at 12:21:54AM +0200, Antonio Diaz Diaz wrote:
 If there is just the excrement of a fly adhered to a corner of the
 envelope (a null byte appended to an otherwise intact file, for
 example), xz will report that the data is corrupt and will not
 deliver the message. This test is inescapable.
   

From xz(1):
   --single-stream
  Decompress only the first .xz stream, and silently ignore pos‐
  sible  remaining  input  data  following the stream.

 Just see the two attached files. 'good.xz' is created with the
 command 'xz -9 -Cnone'. The corrupt version 'bad.xz' is created by
 changing a couple bits in 'good.xz'.
 
 Xz is unable to detect the corruption in 'bad.xz'.

Only because your example uses -Cnone to disable integrity checking, which is
not the default, and which the documentation explicitly warns against unless a
tool other than xz is being used to provide such checks.  (Obviously, this
option is not used by dpkg-deb.)


-- 
Nicholas Breen
nbr...@debian.org


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Accepted gromacs 5.0.6-1 (source all) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 26 Jul 2015 13:58:11 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all
Version: 5.0.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0.6-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted gromacs 5.0.5-1 (source all) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sat, 16 May 2015 11:30:11 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all
Version: 5.0.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0.5-1) unstable; urgency=medium
 .
   * New upstream release.
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Accepted grace 1:5.1.25-1 (source) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Tue, 17 Feb 2015 09:50:49 -0800
Source: grace
Binary: grace
Architecture: source
Version: 1:5.1.25-1
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Closes: 775749
Changes:
 grace (1:5.1.25-1) unstable; urgency=medium
 .
   * New upstream release.
 - No longer clears set comments on load.  (Closes: #775749)
   * copyright: Add 2015 where relevant, disambiguate short license names.
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Accepted grace 1:5.1.24-3 (source amd64) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 04 Jan 2015 09:29:02 -0800
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.24-3
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Closes: 774558
Changes:
 grace (1:5.1.24-3) unstable; urgency=medium
 .
   * Switch to interest-noawait triggers to avoid a possible configuration
 loop with gsfonts.  (Closes: #774558)
   * Update Standards-Version to 3.9.6, no changes required.
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Accepted gromacs 5.0.4-1 (source all amd64) into experimental

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sun, 21 Dec 2014 12:54:35 -0800
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.0.4-1
Distribution: experimental
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0.4-1) experimental; urgency=medium
 .
   * New upstream release.  Uploaded to experimental during the freeze.
 Minor patch rebasing only.
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Accepted gromacs 5.0.2-1 (source all i386) into unstable

[Nicholas Breen]

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Hash: SHA256

Format: 1.8
Date: Sun, 05 Oct 2014 10:29:34 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all i386
Version: 5.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0.2-1) unstable; urgency=medium
 .
   * New upstream release.
   * Update Standards-Version to 3.9.6, no changes required.
   * Update rules to build GPU-accelerated packages, with thanks to
 Steffen Möller.
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Accepted grace 1:5.1.24-1 (source amd64) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sat, 13 Sep 2014 15:48:16 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.24-1
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.24-1) unstable; urgency=medium
 .
   * New upstream release.
 - Remove patches/cephes-license.diff (incorporated upstream), rebase
   other patches as necessary.
 - Fixes input of non-ASCII text under UTF-8 locales. (LP: #1276783)
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Accepted grace 1:5.1.24-2 (source i386) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sat, 13 Sep 2014 16:53:32 -0700
Source: grace
Binary: grace
Architecture: source i386
Version: 1:5.1.24-2
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.24-2) unstable; urgency=medium
 .
   * Add Build-Depends on texlive-fonts-recommended.
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Accepted gromacs 5.0.1-1 (source all amd64) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 06 Sep 2014 11:20:17 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.0.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0.1-1) unstable; urgency=medium
 .
   * New upstream release.
   * Rebase patches involving man pages (moved from share/man to doc/man in
 tarball), drop 20_random123_platforms.patch (incorporated upstream),
 and remove the leading numbers from all patch filenames (a leftover from
 dpatch).
   * man/mdrun_mpi.*: Update .TH line.
   * rules: Set CMAKE_RULE_MESSAGES=OFF to work around blhc false positives
 for W-compiler-flags-hidden.
   * Move debian/upstream to debian/upstream/metadata.
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Accepted gromacs 5.0-3 (source all amd64) into unstable

[Nicholas Breen]

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Format: 1.8
Date: Sun, 24 Aug 2014 20:02:24 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0-3) unstable; urgency=medium
 .
   * Upload to unstable.
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Accepted grace 1:5.1.23-9 (source amd64) into unstable

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 15 Aug 2014 17:33:55 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.23-9
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Closes: 758237
Changes:
 grace (1:5.1.23-9) unstable; urgency=medium
 .
   * copyright: Convert to DEP-5 format and overhaul information.  Include
 e-mail from cephes author regarding its licensing; thanks to Helen
 Faulkner for driving that for the labplot packages many years ago.
 (Closes: #758237)
   * patches/cephes-license.diff: Additionally add cephes/COPYING to the
 unpacked source tree.
   * README.Debian: Update epstopdf information and alioth URL.
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Accepted jigl 2.0.1+20060126-5 (source all)

[Nicholas Breen]

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Format: 1.8
Date: Sun, 13 Jul 2014 17:04:54 -0700
Source: jigl
Binary: jigl
Architecture: source all
Version: 2.0.1+20060126-5
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 jigl   - Generates a static html photo gallery from one or more directorie
Changes:
 jigl (2.0.1+20060126-5) unstable; urgency=medium
 .
   * Switch Recommends (for /usr/bin/rotate) from csh to tcsh.  Add
 libjpeg-progs, which supplies jpegtran.
   * Update Standards-Version to 3.9.5, no changes needed.
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Accepted gromacs 4.6.6-1 (source all amd64)

[Nicholas Breen]

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Format: 1.8
Date: Mon, 07 Jul 2014 09:19:44 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 4.6.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (4.6.6-1) unstable; urgency=medium
 .
   * New upstream release.  Final release of the 4.6 series.
   * debian/copyright: Updated.
   * patches/21_hurd.patch: Incorporated upstream, patch removed.
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Accepted gromacs 5.0-1 (source all amd64)

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 02 Jul 2014 17:35:18 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.0-1
Distribution: experimental
Urgency: low
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Closes: 715935
Changes:
 gromacs (5.0-1) experimental; urgency=low
 .
   * New upstream release, experimental upload.
 - g_sigeps / gmx sigeps command line handling no longer crashes on
   invalid input (Closes: #715935).
   * Rebase existing patches.  Add new patches:
 - 31_manpage_hyphenation.patch: Some parts of the man page generation
   get the hyphen/dash separation right, some don't.  A temporary fix
   pending significant overhaul of the man page system.
   http://redmine.gromacs.org/issues/1437
 - 32_spelling.patch: Correction of minor spelling errors.
   * man/g_{dos,kinetics,luck}.1: Incorporated upstream, removed.
   * man/gmx.1: Rudimentary man page written and added.
   * man/mdrun_mpi.*.1: Updated with text from upstream gmx-mpich.1.
   * rules: Updates for MPI builds and assorted upstream changes.
   * gromacs-data.lintian-overrides, source/lintian-overrides: Removed.
   * Add Build-Depends on external libboost-dev.
   * Switch away from hardening-wrapper in favor of dpkg-buildflags.
   * Update copyright file.
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Accepted gromacs 5.0-2 (source all amd64)

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 02 Jul 2014 20:13:01 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 5.0-2
Distribution: experimental
Urgency: low
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (5.0-2) experimental; urgency=low
 .
   * Add 20_random123_platforms.patch to disable architecture check from
 external Random123 code.
   * Drop discussion of shared libraries from README.Debian for
 gromacs-{mpich,openmpi}.
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Accepted grace 1:5.1.23-8 (source amd64)

[Nicholas Breen]

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Date: Thu, 26 Jun 2014 20:58:11 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.23-8
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.23-8) unstable; urgency=medium
 .
   * Upload to unstable with libxmhtml-dev transition, no further changes.
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Accepted grace 1:5.1.23-7 (source amd64)

[Nicholas Breen]

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Date: Mon, 16 Jun 2014 18:02:18 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.23-7
Distribution: experimental
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 grace  - XY graphing and plotting tool
Changes:
 grace (1:5.1.23-7) experimental; urgency=medium
 .
   * control: Transition to libxmhtml-dev, currently only in experimental.
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Accepted gromacs 4.6.5-2 (source all amd64)

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 16 Jun 2014 18:48:37 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 4.6.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team debichem-de...@lists.alioth.debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 gromacs- Molecular dynamics simulator, with building and analysis tools
 gromacs-data - GROMACS molecular dynamics sim, data and documentation
 gromacs-dev - GROMACS molecular dynamics sim, development kit
 gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
 gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
 gromacs (4.6.5-2) unstable; urgency=medium
 .
   * Update list of OpenMPI architectures to include mips*, arm64.
   * patches/21_hurd.patch: Cherry-pick upstream commit 2c81d3ab to build
 shared libraries on GNU/Hurd.
   * watch: Extend regex to detect -beta, -pre, _pre, *and* -rc suffixes.
   * Remove chrpath workaround, no longer needed as of mpich 3.0.4-6.
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Accepted xbae 4.60.4-6 (source i386)

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 09 Jun 2014 17:30:55 -0700
Source: xbae
Binary: libxbae-dev libxbae4m
Architecture: source i386
Version: 4.60.4-6
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description:
 libxbae-dev - Xbae Matrix Widget development package
 libxbae4m  - Xbae Matrix Widget libraries
Closes: 736667
Changes:
 xbae (4.60.4-6) unstable; urgency=medium
 .
   * Use dh-autoreconf for support of new architectures.  Patch courtesy of
 Daniel T Chen.  (Closes: #736667)
   * Four tiny new patches fixing compiler warnings and code typos:
 - implicit-declaration.diff for examples/matrix/matrix.c
 - pointer-from-integer.diff for examples/tests/leak2.c
 - fix-row-label-buttons.diff for src/Actions.c , patch picked from
   http://sourceforge.net/p/xbae/patches/2/
 - build-failures.diff for doc/images/Makefile.am and configure.in,
   patch adapted in part from #736667 as well
   * Drop libtool-as-needed.diff in favor of dh_autoreconf --as-needed.
   * Update Standards-Version to 3.9.5, no changes required.
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Accepted grace 1:5.1.23-5 (source amd64)

[Nicholas Breen]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 29 Mar 2014 10:36:07 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.23-5
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description: 
 grace  - XY graphing and plotting tool
Closes: 742890
Changes: 
 grace (1:5.1.23-5) unstable; urgency=medium
 .
   * control: Reverse order of xmhtml1-dev | libxmhtml-dev Build-Dep.
 (Closes: #742890)
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Accepted grace 1:5.1.23-6 (source i386)

[Nicholas Breen]

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Format: 1.8
Date: Sat, 29 Mar 2014 11:20:00 -0700
Source: grace
Binary: grace
Architecture: source i386
Version: 1:5.1.23-6
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description: 
 grace  - XY graphing and plotting tool
Changes: 
 grace (1:5.1.23-6) unstable; urgency=medium
 .
   * control: Also add in Build-Deps for libxt-dev, libxext-dev, libxau-dev,
 libxaw7-dev.  Hooray for unspecified transitive dependencies.
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Accepted grace 1:5.1.23-4 (source amd64)

[Nicholas Breen]

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Date: Thu, 27 Mar 2014 20:12:01 -0700
Source: grace
Binary: grace
Architecture: source amd64
Version: 1:5.1.23-4
Distribution: unstable
Urgency: medium
Maintainer: Nicholas Breen nbr...@debian.org
Changed-By: Nicholas Breen nbr...@debian.org
Description: 
 grace  - XY graphing and plotting tool
Closes: 638760
Changes: 
 grace (1:5.1.23-4) unstable; urgency=medium
 .
   * control: XmHTML development package will change to libxmhtml-dev soon;
 modify Build-Depends to libxmhtml-dev | xmhtml1-dev in preparation.
   * rules: Switch back to embedded convenience copy of T1lib.
 (Closes: #638760)
 - control: Drop B-D on t1lib-dev.
 - README.source: add some notes about this.
 - patches/t1lib-general.diff: Incorporate all available patches from
   former Debian distribution of T1lib.
 - grace.lintian-overrides: Suppress relevant embedded-library error.
   * control:  Update Standards-Version to 3.9.5, no changes required.
   * grace.lintian-overrides: Drop workaround for lintian #673112.
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