Re: automated CI on salsa to prepare MR for new upstream version

[Yaroslav Halchenko]

Dear Andrej, Paul and undef,

I just wanted to say Thank you for all the pointers!  Overall, janitor
looks great and the most advanced and seems already covering various
aspects but might be a bit "too big to tune for our own use-case", so we
might indeed pick up on ideas/implementations... we will see.

Cheers,

On Sat, 21 Jan 2023, Andrej Shadura wrote:

> Hi,

> On Fri, 20 Jan 2023, at 17:01, Yaroslav Halchenko wrote:
> > Dear Debian gurus,

> > Lazy me would love to get automation going akin to the one in
> > conda-forge (see e.g. [1]) -- whenever a new upstream is released
> > (as could be detected with a run of uscan) the CI would

> <...>

> > Is there any package/tool which already does something like that on CI?
> > Or may be you see some issues with such a procedure?

> Not quite the same, but we have machinery to update packages from Debian in 
> Apertis:
> https://gitlab.apertis.org/infrastructure/ci-package-builder/

> Related scripts live here:
> https://gitlab.apertis.org/infrastructure/apertis-docker-images/-/tree/apertis/v2024dev1/package-source-builder/overlay/usr/bin
> https://gitlab.apertis.org/pkg/apertis-dev-tools/-/tree/apertis/v2024dev1/tools
-- 
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
WWW:   http://www.linkedin.com/in/yarik



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automated CI on salsa to prepare MR for new upstream version

[Yaroslav Halchenko]

Dear Debian gurus,

Lazy me would love to get automation going akin to the one in
conda-forge (see e.g. [1]) -- whenever a new upstream is released
(as could be detected with a run of uscan) the CI would

- would run uscan

  - get new source {tarball}
  - get new {uversion} (from uscan output/tarball)

- would run 

  gbp import-orig -- --pristine-tar --debian-branch=new-{uversion}/$(gbp config 
buildpackage.debian-branch) ... 

  i.e. import sources and prepare all 3 branches with dedicated prefix
  new-{uversion}/

- might do some other automated/decided upon actions such as e.g.
  "drop all debian/patches/00*" which were cherry-picked from upstream,
  and were applied etc.

- push those branches into salsa repo and submit a merge request
  against the debian-branch (while providing URLs for other two
  branches).

- employ salsa-ci-team/pipeline (or alike) to build package from
  those 3 branches

- maintainer then reviews/tunes up the MR and if merges, CI would
  merge/push all the new-{uversion}/ branches into corresponding
  one and delete them from CI.

  If MR is closed, CI would just remove all those new-{uversion}
  branches.


Is there any package/tool which already does something like that on CI?
Or may be you see some issues with such a procedure?

Thanks in advance!

[1] https://github.com/conda-forge/datalad-feedstock/pull/95

-- 
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
WWW:   http://www.linkedin.com/in/yarik



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Bug#1010897: ITP: python3-versioningit -- PEP 518 driven setuptools plugin for auto-versioning using git/hg

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name: python3-versioningit
  Version : 1.1.1
  Upstream Author : John T. Wodder II
* URL : https://github.com/jwodder/versioningit
* License : MIT
  Programming Lang: Python
  Description : PEP 518 driven setuptools plugin for auto-versioning using 
git/hg

versioningit is yet another setuptools plugin for automatically
determining your package's version based on your version control repository's
tags. Unlike others, it allows easy customization of the version format and
even lets you easily override the separate functions used for version
extraction and calculation.

Features:

- Installed & configured through PEP 518's pyproject.toml
- Supports Git, modern Git archives, and Mercurial
- Formatting of the final version uses format template strings, with fields for 
basic VCS information and separate template strings for distanced vs. dirty vs. 
distanced-and-dirty repository states
- Can optionally write the final version to a file for loading at runtime
- Provides custom setuptools commands for inserting the final version into a 
source file at build time
- The individual methods for VCS querying, tag-to-version calculation, version 
bumping, version formatting, and writing the version to a file can all be 
customized using either functions defined alongside one's project code or via 
publicly-distributed entry points
- Can alternatively be used as a library for use in setup.py or the like, in 
case you don't want to or can't configure it via pyproject.toml
- The only thing it does is calculate your version and optionally write it to a 
file; there's no overriding of your sdist contents based on what's in your Git 
repository, especially not without a way to turn it off, because that would 
just be rude.

Bug#1003290: ITP: mricrogl -- magnetic resonance image conversion, viewing and analysis

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 
X-Debbugs-Cc: debian-devel@lists.debian.org, Debian Med Packaging Team 


* Package name: mricrogl
  Version : 1.2.20211006
  Upstream Author : Chris Rorden
* URL : https://github.com/rordenlab/MRIcroGL
* License : BSD-2-clause
  Programming Lang: Pascal
  Description : magnetic resonance image conversion, viewing and analysis

 This is a GUI-based visualization and analysis tool for medical imaging.
 .
 This package provides the MRIcroGL executable.

Packaging will be largely based on mricron packaging originally done by
NeuroDebian team, and now maintained by the glorious Debian Med.

Accepted datalad 0.12.2-1 (source all) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Tue, 28 Jan 2020 09:46:50 -0500
Source: datalad
Binary: datalad python3-datalad
Architecture: source all
Version: 0.12.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.12.2-1) unstable; urgency=medium
 .
   [ Debian Janitor ]
   * debian/copyright: use spaces rather than tabs to start continuation
 lines.
   * Use secure URI in Homepage field.
   * Bump debhelper from old 9 to 12.
   * Set debhelper-compat version in Build-Depends.
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
 Repository-Browse.
   * Use canonical URL in Vcs-Git.
 .
   [ Yaroslav Halchenko ]
   * New upstream release
   * Unbump debhelper to 11 for backporting
   * debian/control
 - Recommend datalad-container not datalad-containers
 - Boost python3-git dependency to 2.1.12
 - *Depend on p7zip-full which is used for archives handling
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Bug#950095: ITP: pyout -- interface for writing structured records as a table in a terminal

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: pyout
  Version : 0.5.0
  Upstream Author : Kyle Meyer 
* URL : https://github.com/pyout/pyout
* License : MIT/X
  Programming Lang: Python
  Description : interface for writing structured records as a table in a 
terminal

pyout is a Python package that defines an interface for writing
structured records as a table in a terminal. It is being developed to replace
custom code for displaying tabular data in in ReproMan and DataLad.
.
A primary goal of the interface is the separation of content from style
and presentation. Current capabilities include
.
 - automatic width adjustment and updating of previous values
 - styling based on a field value or specified interval
 - defining a transform function that maps a raw value to the displayed value
 - defining a summary function that generates a summary of a column (e.g., 
value totals)
 - support for delayed, asynchronous values that are added to the table as they 
come in


This package is needed for other upcoming ITPs, and eventually might
also be used in already existing packages (e.g. datalad)

The plan is to team maintain it within Debian Python Modules Team, since pyout 
is
of general utility.

Accepted python-quantities 0.12.4-1 (source) into unstable

[Yaroslav Halchenko]

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Date: Mon, 27 Jan 2020 20:34:29 -0500
Source: python-quantities
Architecture: source
Version: 0.12.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yaroslav Halchenko 
Closes: 945260
Changes:
 python-quantities (0.12.4-1) unstable; urgency=medium
 .
   * New upstream release
 - addresses "Fix " not supported" error" (Closes: #945260)
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Accepted datalad 0.12.1-1 (source all) into unstable

[Yaroslav Halchenko]

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Source: datalad
Binary: datalad python3-datalad
Architecture: source all
Version: 0.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.12.1-1) unstable; urgency=medium
 .
   * Fresh upstream bugfix release
   * debian/patches/deb_no_utf8 updated to not test unicode when python < 3.7
 (see https://github.com/datalad/datalad/issues/4016)
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Accepted datalad 0.12.0-1 (source all) into unstable

[Yaroslav Halchenko]

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Date: Sat, 11 Jan 2020 09:17:58 -0500
Source: datalad
Binary: datalad python3-datalad
Architecture: source all
Version: 0.12.0-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python3-datalad - data files management and distribution platform
Closes: 948533
Changes:
 datalad (0.12.0-1) unstable; urgency=medium
 .
   [ Michael Hanke ]
   * New upstream major release.
   * debian/control
 - add python3-distro to build-depends (Closes: #948533)
 - add python3-gitlab to Recommends.
 - boost minimal git-annex version to 7.20190503
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Accepted connectome-workbench 1.4.2-1 (source) into unstable

[Yaroslav Halchenko]

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Date: Thu, 09 Jan 2020 18:33:25 -0500
Source: connectome-workbench
Architecture: source
Version: 1.4.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 connectome-workbench (1.4.2-1) unstable; urgency=medium
 .
   * Fresh upstream
 - removing all debian/patches/0* picked up from upstream
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Bug#948073: ITP: tedana -- TE-dependent analysis (tedana) of multi-echo fMRI

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: tedana
  Version : 0.0.8
  Upstream Author : tedana developers
* URL : https://github.com/ME-ICA/tedana
* License : LGPL
  Programming Lang: Python
  Description : TE-dependent analysis (tedana) of multi-echo fMRI

The tedana package is part of the ME-ICA pipeline, performing TE-dependent
analysis of multi-echo functional magnetic resonance imaging (fMRI) data.
It is a Python module for denoising multi-echo functional magnetic
resonance imaging (fMRI) data.

Planing to maintain under Debian-Med team.  Repository
https://salsa.debian.org/med-team/tedana
Requires nilearn, RFP #792279

Accepted duecredit 0.7.0-3 (source) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Wed, 18 Dec 2019 22:21:04 -0500
Source: duecredit
Architecture: source
Version: 0.7.0-3
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Closes: 936450
Changes:
 duecredit (0.7.0-3) unstable; urgency=medium
 .
   * Completely remove mentioining of python2 in debian/rules
 (Closes: #936450)
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Accepted duecredit 0.7.0-2 (source) into unstable

[Yaroslav Halchenko]

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Date: Tue, 10 Dec 2019 23:18:30 -0500
Source: duecredit
Architecture: source
Version: 0.7.0-2
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Closes: 936450
Changes:
 duecredit (0.7.0-2) unstable; urgency=medium
 .
   * Drop python2 support (Closes: #936450)
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Accepted connectome-workbench 1.4.1-4 (source) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Fri, 15 Nov 2019 11:29:31 -0500
Source: connectome-workbench
Architecture: source
Version: 1.4.1-4
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 connectome-workbench (1.4.1-4) unstable; urgency=medium
 .
   * debian/rules
 - fixed  grep invocation to match architecture to use -E not -e to have
   "(...|...)"
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Accepted connectome-workbench 1.4.1-3 (source) into unstable

[Yaroslav Halchenko]

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Date: Thu, 14 Nov 2019 09:58:37 -0500
Source: connectome-workbench
Architecture: source
Version: 1.4.1-3
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 connectome-workbench (1.4.1-3) unstable; urgency=medium
 .
   * debian/patches/series
 - fixed the listing of two patches being in the same line
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Accepted connectome-workbench 1.4.1-2 (source) into unstable

[Yaroslav Halchenko]

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Date: Wed, 13 Nov 2019 23:17:53 -0500
Source: connectome-workbench
Architecture: source
Version: 1.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 connectome-workbench (1.4.1-2) unstable; urgency=medium
 .
   * debian/control
 - "optional" instead of "extra" priority
 - policy compliance boosted to 4.4.0 (should be all kosher)
   * debian/{rules,patches/000*}
 - disable building memory demanding help on mipsel, m68k, sh4
   architectures
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Accepted nibabel 2.5.1-1 (source) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Sun, 10 Nov 2019 18:09:36 -0500
Source: nibabel
Architecture: source
Version: 2.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 nibabel (2.5.1-1) unstable; urgency=medium
 .
   * Fresh 2.5.1 release (2.5.x series is the last one to support python2)
   * debian/control
 - boosted policy to 4.4.1
 - Stripped XS- for Testsuite
   * debian/copyright
 - removed obsolete paragraph for no longer included
   doc/sphinxext/autosummary
   * rm debian/patches/lenny-dsc-patch_numpy_testing - no backports for lenny
 were built for years
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Accepted connectome-workbench 1.4.1-1 (source) into unstable

[Yaroslav Halchenko]

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Date: Tue, 05 Nov 2019 20:32:34 -0500
Source: connectome-workbench
Architecture: source
Version: 1.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 connectome-workbench (1.4.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Updated debian/copyright from upstream
   * debian/control
 - added libglm-dev to build-depends (upstream bundles a copy but
   should pick up system library if available)
 - added opencl-c-headers to build-depends
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Accepted pynwb 0.5.1-2 (source) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Fri, 18 Oct 2019 10:20:23 -0400
Source: pynwb
Architecture: source
Version: 0.5.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Yaroslav Halchenko 
Closes: 934868
Changes:
 pynwb (0.5.1-2) unstable; urgency=medium
 .
   * Placedunder Debian-Med maintenance (maintainer, vcs fields)
   * Drop python2 package (Closes: #934868)
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Accepted datalad 0.11.8-1 (source) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Thu, 10 Oct 2019 21:32:17 -0400
Source: datalad
Architecture: source
Version: 0.11.8-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Changes:
 datalad (0.11.8-1) unstable; urgency=medium
 .
   * Fresh upstream release (from tomorrow)
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Accepted psychtoolbox-3 3.0.15.20190725.dfsg1-1 (source) into unstable

[Yaroslav Halchenko]

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Format: 1.8
Date: Thu, 19 Sep 2019 16:17:11 -0400
Source: psychtoolbox-3
Architecture: source
Version: 3.0.15.20190725.dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Closes: 801652 883348
Changes:
 psychtoolbox-3 (3.0.15.20190725.dfsg1-1) unstable; urgency=medium
 .
   * Strip away ./Psychtoolbox/PsychContributed/gpuclockctl
 from sources, and Recommend libgamemode0 providing it ATM
   * Remove obsolete octave-audio from Recommends (Closes: #801652)
   * Remove octave-workspace files from the installation, which would
 also help making build reproducible (thanks Chris Lamb for the
 patch) (Closes: #883348)
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Bug#940625: ITP: diskcache -- Python module for Disk and file backed persistent cache

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: diskcache
  Version : 4.0.0
  Upstream Author : Grant Jenks 
* URL : http://www.grantjenks.com/docs/diskcache/
* License : Apache-2.0
  Programming Lang: Python
  Description : Python module for Disk and file backed persistent cache

 DiskCache is an Apache2 licensed disk and file backed cache library, written
 in pure-Python. Its features include
 .
 - Django compatible API
 - Thread-safe and process-safe
 - Supports multiple eviction policies (LRU and LFU included)
 - Keys support “tag” metadata and eviction

 This package is needed for another ITP, girder-client

Bug#940622: ITP: girder-client -- Python libraries and a command-line tool to interact with a Girder server

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: girder-client
  Version : 3.0.3
  Upstream Author : Girder Team
* URL : https://girder.readthedocs.io/en/latest/python-client.html
* License : Apache-2.0
  Programming Lang: Python
  Description : Python libraries and a command-line tool to interact with a 
Girder server

Girder comes with a Python client library and a CLI to allow for
programmatic interaction with a Girder server, and also to workaround
limitations of the web client. For example, the python CLI makes it much easier
to upload a large, nested hierarchy of data from a local directory to Girder,
and also makes it much easier to download a large, nested hierarchy of data
from Girder to a local directory.

Accepted neo 0.7.2-2 (source) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 17 Sep 2019 12:03:42 -0400
Source: neo
Architecture: source
Version: 0.7.2-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Closes: 940314
Changes:
 neo (0.7.2-2) unstable; urgency=medium
 .
   * Practicing source only upload (Closes: #940314)
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Accepted neo 0.7.2-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 01 Sep 2019 13:48:55 +0200
Source: neo
Binary: python3-neo
Architecture: source all
Version: 0.7.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python3-neo - Python IO library for electrophysiological data formats
Closes: 937127 939083
Changes:
 neo (0.7.2-1) unstable; urgency=medium
 .
   * New upstream release
 - reincarnating maintenance thus closing RM report (Closes: #939083)
   * debian/patches
 - dropped the one picked up from upstream awhile back
 - CPed patch from https://github.com/NeuralEnsemble/python-neo/pull/733
   to raise numpy.testing.SkipTest and not unittest.SkipTest since somehow
   throwing that one causes an ERROR not a SKIP
   * debian/
 - boost policy to 4.3.0
 - boost compat to 10 (not later for seamless backporting)
 - switch to provide python3- (no python-) package (Closes: #937127)
 - switch to use pybuild dh buildsystem
   - dh-python into build-depends
 - adjust invocation of tests to use nose via -m nose
 - priority optional (not extra)
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Accepted datalad 0.11.7-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 02 Sep 2019 09:18:59 +0200
Source: datalad
Binary: datalad python3-datalad
Architecture: source all
Version: 0.11.7-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.7-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * Use t...@datalad.org not @neuro.debian.net address for Maintainers
   * debian/patches/python3.patch
 - removed changes to *procedures* - handled upstream more flexibly
   * debian/patches/deb_no_utf8
 - do not use unicode in OBSCURE_FILENAME due to a bug in git-annex
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Accepted python-quantities 0.12.3-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 01 Sep 2019 14:12:15 +0200
Source: python-quantities
Binary: python3-quantities
Architecture: source all
Version: 0.12.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yaroslav Halchenko 
Description:
 python3-quantities - Library for computation of physical quantities with 
units, based
Closes: 938118
Changes:
 python-quantities (0.12.3-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian/control
 - migrated into python3-quantities (Closes: #938118)
 - boosted policy to 4.3.0
 - added python3-numpy to build-depends (for testing)
   * debian/rules
 - switch to use pybuild buildsystem
   * debian/patches/up_no_test_xfail
 - to not xfail a test
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Accepted bats 1.1.0+git104-g1c83a1b-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 06 Aug 2019 11:52:32 -0400
Source: bats
Binary: bats
Architecture: source all
Version: 1.1.0+git104-g1c83a1b-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 bats   - bash automated testing system
Changes:
 bats (1.1.0+git104-g1c83a1b-1) unstable; urgency=medium
 .
   * New upstream snapshot from v1.1.0-104-g1c83a1b
 - adds --filter argument
   * Needs GNU's (not moreutils) parallel command line tool.
 Added to B-Depends (for tests) and Recommends.
 ATM no proper sensing is done, so parallel runs might fail if there is
 no GNU parallel. See https://github.com/bats-core/bats-core/issues/240
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Accepted python-bids-validator 1.2.4-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 01 Aug 2019 09:59:53 -0400
Source: python-bids-validator
Binary: python3-bids-validator
Architecture: source all
Version: 1.2.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 

Changed-By: Yaroslav Halchenko 
Description:
 python3-bids-validator - validator for the Brain Imaging Data Structure (BIDS) 
datasets
Closes: 933660
Changes:
 python-bids-validator (1.2.4-1) unstable; urgency=low
 .
   * Initial packaging (Closes: #933660)
 * source package automatically created by stdeb 0.8.5
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Accepted datalad-container 0.5.0-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 12 Aug 2019 11:38:05 -0400
Source: datalad-container
Binary: datalad-container
Architecture: source all
Version: 0.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 datalad-container - DataLad extension for working with containerized 
environments
Changes:
 datalad-container (0.5.0-1) unstable; urgency=medium
 .
   * Recent upstream release
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Accepted bats 1.1.0-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 06 Aug 2019 11:47:09 -0400
Source: bats
Binary: bats
Architecture: source all
Version: 1.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 bats   - bash automated testing system
Closes: 925095
Changes:
 bats (1.1.0-1) unstable; urgency=medium
 .
   * Fresh upstream release
 - upstream development was "forked" to be done under
   https://github.com/bats-core/bats-core
 - adjusted debian/control Homepage (Closes: #925095)
   (thanks Kevin Otte for the initial report)
   * Refreshed and then disabled deb_libexec_to_lib patch - ship
 under /usr/libexec to stay consistent with upstream
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Accepted nibabel 2.5.0-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 05 Aug 2019 09:52:19 -0400
Source: nibabel
Binary: python-nibabel python-nibabel-doc python3-nibabel
Architecture: source all
Version: 2.5.0-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Changes:
 nibabel (2.5.0-1) unstable; urgency=medium
 .
   * Fresh 2.5.0 release
 - many fixes (including .trk files failing tests on s390)
 - some API deprecations
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Bug#933660: ITP: python-bids-validator -- validator for the Brain Imaging Data Structure (BIDS) datasets

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: python-bids-validator
  Version : 1.2.4
  Upstream Author : bids-validator Team
* URL : https://github.com/bids-standard/bids-validator
* License : MIT/X
  Programming Lang: Python
  Description : validator for the Brain Imaging Data Structure (BIDS) 
datasets

 This package contains a Python module to validate BIDS (Brain Imaging
 Data Structure) datasets.  It does not contain original bids-validator
 command line tool (written in JS).

This package is a requirement for pybids package.
Only python3 version will be packaged.
Package will be maintained under Debian-Med team umbrella.

Accepted datalad 0.11.6-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 29 Jul 2019 12:07:25 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.6-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.6-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * Upload to unstable (buster is out)
   * Dropped 2 debian/patches/0001* CPed from upstream
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Bug#932903: ITP: python-hdmf -- high-level Python API for specifying, reading, writing and manipulating hierarchical object data

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: python-hdmf
  Version : 1.0.5
  Upstream Author : HDMF Team 
(https://github.com/hdmf-dev/hdmf/graphs/contributors)
* URL : https://github.com/hdmf-dev/hdmf/
* License : BSD-3
  Programming Lang: Python
  Description : The Hierarchical Data Modeling Framework
  
The Hierarchical Data Modeling Framework, or HDMF is a Python package for
working with hierarchical data. It provides APIs for specifying data models,
reading and writing data to different storage backends, and representing data
with Python object.

It is a dependency for a new version (1.0.3) of python-pynwb package

Indend to package and maintain under Debian Med Team umbrella

Accepted nibabel 2.4.1-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 28 May 2019 09:35:14 -0400
Source: nibabel
Binary: python-nibabel python-nibabel-doc python3-nibabel
Architecture: source all
Version: 2.4.1-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Changes:
 nibabel (2.4.1-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted datalad 0.11.5-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 24 May 2019 07:31:33 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.5-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.5-1) experimental; urgency=medium
 .
   * Fresh upstream bugfix/minor release
   * debian/rules
 - set http*_proxy to empty value so VCR based tests (github) would
   work (otherwise mismatch from proxy IP)
   * debian/control
 - added python{,3}-vcr to build-depends for github vcr tests
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Accepted heudiconv 0.5.4-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 10 May 2019 13:05:22 -0400
Source: heudiconv
Binary: heudiconv
Architecture: source all
Version: 0.5.4-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 heudiconv  - DICOM converter with support for structure heuristics
Changes:
 heudiconv (0.5.4-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted neurodebian 0.39.0 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 22 Apr 2019 11:45:04 -0400
Source: neurodebian
Binary: neurodebian neurodebian-archive-keyring neurodebian-desktop 
neurodebian-dev neurodebian-freeze neurodebian-popularity-contest
Architecture: source all
Version: 0.39.0
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 neurodebian - neuroscience-oriented distribution - repository configuration
 neurodebian-archive-keyring - neuroscience-oriented distribution - GnuPG 
archive keys
 neurodebian-desktop - neuroscience-oriented distribution - desktop integration
 neurodebian-dev - neuroscience-oriented distribution - development tools
 neurodebian-freeze - nd_freeze tool to freeze APT sources to use snapshots
 neurodebian-popularity-contest - neuroscience-oriented distribution - popcon 
integration
Changes:
 neurodebian (0.39.0) unstable; urgency=medium
 .
   * nd_freeze:
 - fix it up to work with the migrated snapshot-neuro.debian.net
   (no custom port, no need for knocking)
 - test fixed up to not use EOLed wheezey (use stretch instead)
   * misc minor needed changes
 - remove EOLed releases of Ubuntu
 - fix up USTC mirror URL (was migrated years back)
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Accepted joblib 0.13.2-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 15 Apr 2019 11:00:01 -0400
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.13.2-1
Distribution: experimental
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.13.2-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted joblib 0.13.0-2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 12 Apr 2019 10:54:23 -0400
Source: joblib
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Architecture: source all
Version: 0.13.0-2
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Closes: 926930
Changes:
 joblib (0.13.0-2) unstable; urgency=medium
 .
   * debian/patches/deb_xfail_test_nested_parallelism_limit (Closes: #926930)
 - xfail a test failing on single core boxes. Thanks Santiago Vila
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Accepted psychtoolbox-3 3.0.15.20190401.dfsg1-1 (source amd64 all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 10 Apr 2019 10:11:47 -0400
Source: psychtoolbox-3
Binary: octave-psychtoolbox-3 psychtoolbox-3-common psychtoolbox-3-dbg 
psychtoolbox-3-lib
Architecture: source amd64 all
Version: 3.0.15.20190401.dfsg1-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 octave-psychtoolbox-3 - toolbox for vision research -- Octave bindings
 psychtoolbox-3-common - toolbox for vision research -- arch/interpreter 
independent part
 psychtoolbox-3-dbg - toolbox for vision research -- debug symbols for binaries
 psychtoolbox-3-lib - toolbox for vision research -- arch-specific parts
Changes:
 psychtoolbox-3 (3.0.15.20190401.dfsg1-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted nibabel 2.4.0-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 02 Apr 2019 09:39:01 -0400
Source: nibabel
Binary: python-nibabel python-nibabel-doc python3-nibabel
Architecture: source all
Version: 2.4.0-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Changes:
 nibabel (2.4.0-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted datalad 0.11.4-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Thu, 04 Apr 2019 23:02:00 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.4-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.4-1) experimental; urgency=medium
 .
   * Fresh upstream bugfix/minor release
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Accepted nipype 1.1.9-1 (source all) into experimental

[Yaroslav Halchenko]

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Format: 1.8
Date: Thu, 14 Mar 2019 22:40:32 -0400
Source: nipype
Binary: python-nipype python-nipype-doc
Architecture: source all
Version: 1.1.9-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipype - Neuroimaging data analysis pipelines in Python
 python-nipype-doc - Neuroimaging data analysis pipelines in Python -- 
documentation
Changes:
 nipype (1.1.9-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted datalad-container 0.3.1-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 06 Mar 2019 10:09:17 -0500
Source: datalad-container
Binary: datalad-container
Architecture: source all
Version: 0.3.1-1
Distribution: experimental
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 datalad-container - DataLad extension for working with containerized 
environments
Changes:
 datalad-container (0.3.1-1) experimental; urgency=medium
 .
   * Fresh upstream release
   * debian/patches - dropped, upstreamed
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Accepted duecredit 0.7.0-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 01 Mar 2019 13:10:33 -0500
Source: duecredit
Binary: python-duecredit python3-duecredit
Architecture: source all
Version: 0.7.0-1
Distribution: experimental
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-duecredit - Publications (and donations) tracer - Python 2.X
 python3-duecredit - Publications (and donations) tracer
Changes:
 duecredit (0.7.0-1) experimental; urgency=medium
 .
   * Fresh upstream release
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Accepted nitime 0.7-2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 21 Feb 2019 12:50:06 -0500
Source: nitime
Binary: python-nitime python-nitime-doc
Architecture: source all
Version: 0.7-2
Distribution: unstable
Urgency: high
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nitime - timeseries analysis for neuroscience data (nitime)
 python-nitime-doc - timeseries analysis for neuroscience data (nitime) -- 
documentati
Closes: 922256
Changes:
 nitime (0.7-2) unstable; urgency=high
 .
   * Use mathjax sphinx.ext if no pngmath is available (Closes: #922256)
   * debian/control
 - boost policy to 4.3.0
 - remove obsolete X-Python*
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Accepted datalad 0.11.3-1 (source all) into experimental

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 19 Feb 2019 12:06:41 -0500
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.3-1
Distribution: experimental
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.3-1) experimental; urgency=medium
 .
   * Fresh upstream bugfix release. Since bundles some new features, upload to
 experimental
   * debian/control
 - do demand python{,3}-libxmp on older systems with nose < 1.3.7-2.
   Otherwise nose fails to run tests on e.g. jessie.
   Ref: https://github.com/datalad/datalad/issues/3170
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Accepted datalad 0.11.2-2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 08 Feb 2019 14:32:00 -0500
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.2-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.2-2) unstable; urgency=medium
 .
   * Drop B-Depends on python-libxmp - optional dependency and currently
 causes possible removal of datalad from buster
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Accepted datalad 0.11.2-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

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Date: Wed, 06 Feb 2019 23:20:28 -0500
Source: datalad
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Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.2-1) unstable; urgency=medium
 .
   * Fresh upstream bugfix/minor release
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Accepted psychtoolbox-3 3.0.15.20190207.dfsg1-1 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 07 Feb 2019 07:49:07 -0500
Source: psychtoolbox-3
Binary: octave-psychtoolbox-3 psychtoolbox-3-common psychtoolbox-3-dbg 
psychtoolbox-3-lib
Architecture: source amd64 all
Version: 3.0.15.20190207.dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 octave-psychtoolbox-3 - toolbox for vision research -- Octave bindings
 psychtoolbox-3-common - toolbox for vision research -- arch/interpreter 
independent part
 psychtoolbox-3-dbg - toolbox for vision research -- debug symbols for binaries
 psychtoolbox-3-lib - toolbox for vision research -- arch-specific parts
Changes:
 psychtoolbox-3 (3.0.15.20190207.dfsg1-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted psychtoolbox-3 3.0.15.20181125.dfsg1-2 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 06 Feb 2019 15:49:47 -0500
Source: psychtoolbox-3
Binary: octave-psychtoolbox-3 psychtoolbox-3-common psychtoolbox-3-dbg 
psychtoolbox-3-lib
Architecture: source amd64 all
Version: 3.0.15.20181125.dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 octave-psychtoolbox-3 - toolbox for vision research -- Octave bindings
 psychtoolbox-3-common - toolbox for vision research -- arch/interpreter 
independent part
 psychtoolbox-3-dbg - toolbox for vision research -- debug symbols for binaries
 psychtoolbox-3-lib - toolbox for vision research -- arch-specific parts
Changes:
 psychtoolbox-3 (3.0.15.20181125.dfsg1-2) unstable; urgency=medium
 .
   * d/{control,compat}
 - boost compat to 9 and remove added python b-depends - they must not
   be needed, but I guess were triggered by having too old of compat level
   * d/control
 - use "optional" not "extra" priority
 - adjusted VCS fields to point to github where we have it most up to date
   ATM
   * d/rules
 - force --buildsystem=makefile so debhelper doesn't decide to go for
   pybuild (not relevant and causes demanding python)
 - run tests with the fake HOME pointing to empty writable dir ./tests-home
   * d/watch
 - for now added target one to monitor (github) as a comment since still
   would need heavy version parsing tuning
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Accepted neurodebian 0.38.3 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 06 Feb 2019 20:37:10 -0500
Source: neurodebian
Binary: neurodebian neurodebian-archive-keyring neurodebian-desktop 
neurodebian-dev neurodebian-freeze neurodebian-popularity-contest
Architecture: source all
Version: 0.38.3
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 neurodebian - neuroscience-oriented distribution - repository configuration
 neurodebian-archive-keyring - neuroscience-oriented distribution - GnuPG 
archive keys
 neurodebian-desktop - neuroscience-oriented distribution - desktop integration
 neurodebian-dev - neuroscience-oriented distribution - development tools
 neurodebian-freeze - nd_freeze tool to freeze APT sources to use snapshots
 neurodebian-popularity-contest - neuroscience-oriented distribution - popcon 
integration
Changes:
 neurodebian (0.38.3) unstable; urgency=medium
 .
   * nd_freeze:
 - got -h|--help, --debug command line options
 - improved information output about ongoing actions
 - now handles backports correctly
 - switched sources discovery from apt-cache to analysis of *Release files
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Accepted psychtoolbox-3 3.0.15.20181125.dfsg1-1 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 05 Feb 2019 22:31:38 -0500
Source: psychtoolbox-3
Binary: octave-psychtoolbox-3 psychtoolbox-3-common psychtoolbox-3-dbg 
psychtoolbox-3-lib
Architecture: source amd64 all
Version: 3.0.15.20181125.dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 octave-psychtoolbox-3 - toolbox for vision research -- Octave bindings
 psychtoolbox-3-common - toolbox for vision research -- arch/interpreter 
independent part
 psychtoolbox-3-dbg - toolbox for vision research -- debug symbols for binaries
 psychtoolbox-3-lib - toolbox for vision research -- arch-specific parts
Changes:
 psychtoolbox-3 (3.0.15.20181125.dfsg1-1) unstable; urgency=medium
 .
   * Recent upstream snapshot release
   * d/{control,rules,patches}
 - use system wide pulseaudio with upstream blessing
   * d/control
 - boosted policy to 4.3.0
 - added python2-minimal | python-minimal to build-depends since
   dh auto_clean started to fail with enigmatic demand of pyversions
   to be present
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Accepted nipype 1.1.8-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 03 Feb 2019 19:16:00 -0500
Source: nipype
Binary: python-nipype python-nipype-doc
Architecture: source all
Version: 1.1.8-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipype - Neuroimaging data analysis pipelines in Python
 python-nipype-doc - Neuroimaging data analysis pipelines in Python -- 
documentation
Changes:
 nipype (1.1.8-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted mrtrix3 3.0~rc3+git135-g2b8e7d0c2-3 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 22 Jan 2019 14:49:00 -0500
Source: mrtrix3
Binary: mrtrix3 mrtrix3-doc
Architecture: source amd64 all
Version: 3.0~rc3+git135-g2b8e7d0c2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Yaroslav Halchenko 
Description:
 mrtrix3- diffusion-weighted MRI white matter tractography
 mrtrix3-doc - documentation for mrtrix3
Closes: 916775
Changes:
 mrtrix3 (3.0~rc3+git135-g2b8e7d0c2-3) unstable; urgency=medium
 .
   * Clean up *.py? files upon install
   * debian/control, debian/patches/up_blend_python - just ask/use default
 Python (currently python2)
 .
 mrtrix3 (3.0~rc3+git135-g2b8e7d0c2-2) neurodebian; urgency=medium
 .
   * Picked up two commits from upstream's origin/simplify_gl_core_header
 to resolve i386 build failure
   * Fix symlinks for the manpages to point to mrtrix3.1.gz
 not the absent mrtrix.1.gz (Closes: #916775)
   * Ship Python mrtrix3 module for internal use:
 - Many tools rely on Python (2) support module, which was omitted
 .
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 .
   * Fresh upstream snapshot
 - potentially fixes FTBFS on some non-x32 platforms where failure was
   due to the absent SSE support and xmmintrin.h
   * debian/gbp.conf
 - adjusted to relfect used branches layout, where debian branch is based on
   (original) upstream's master branch.
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Accepted datalad-container 0.2.2-2 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 14 Jan 2019 11:52:19 -0500
Source: datalad-container
Binary: datalad-container
Architecture: source all
Version: 0.2.2-2
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 datalad-container - DataLad extension for working with containerized 
environments
Closes: 918924
Changes:
 datalad-container (0.2.2-2) unstable; urgency=medium
 .
   * Re-upload to Debian proper (Closes: #918924)
   * debian/copyright
 - adjusted to reference copyright/license of borrowed code under Python2
   license
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Accepted heudiconv 0.5.3-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 12 Jan 2019 09:54:18 -0500
Source: heudiconv
Binary: heudiconv
Architecture: source all
Version: 0.5.3-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 heudiconv  - DICOM converter with support for structure heuristics
Changes:
 heudiconv (0.5.3-1) unstable; urgency=medium
 .
   * Fresh minor bugfix release
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Bug#919003: ITP: grabbit -- get grabby with file trees

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: grabbit
  Version : 0.2.6
  Upstream Author : Tal Yarkoni and a team
* URL : https://github.com/grabbles/grabbit/
* License : MIT/X code with GPL external
  Programming Lang: Python
  Description : get grabby with file trees

 Grabbit is a lightweight Python package for simple queries over filenames 
within
 a project. It is geared towards projects or applications with highly structured
 filenames that allow useful queries to be performed without having to inspect
 the file metadata or contents.

This is a dependency for upcoming another package (pybids), which will be a
dependency for upcoming datalad-neuroimaging.
Decided to place under Python modules team for possible future assistence.

Although coming from neuroimaging field, it is of generic interest.

Accepted nipy 0.4.2-2 (source all amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 10 Jan 2019 11:05:31 -0500
Source: nipy
Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc
Architecture: source all amd64
Version: 0.4.2-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipy - Analysis of structural and functional neuroimaging data
 python-nipy-doc - documentation and examples for NiPy
 python-nipy-lib - Analysis of structural and functional neuroimaging data
 python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data
Closes: 906388
Changes:
 nipy (0.4.2-2) unstable; urgency=medium
 .
   * Cherry picked a number of fixes from upstream/PRs to become a part of the
 next release (Closes: #906388)
   * debian/control
 - fixed up Vcs fields to point to salsa
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Bug#918924: ITP: datalad-container -- DataLad extension for working with containerized environments

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: datalad-container
  Version : 0.2.2
  Upstream Author : DataLad Team 
* URL : http://www.datalad.org
* License : Expat
  Programming Lang: Python
  Description : DataLad extension for working with containerized 
environments

 This extension enhances DataLad (http://datalad.org) for working with
 computational containers.

Accepted nibabel 2.3.2-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 04 Jan 2019 23:35:50 -0500
Source: nibabel
Binary: python-nibabel python3-nibabel python-nibabel-doc
Architecture: source all
Version: 2.3.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Changes:
 nibabel (2.3.2-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted heudiconv 0.5.2-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 04 Jan 2019 10:35:47 -0500
Source: heudiconv
Binary: heudiconv
Architecture: source all
Version: 0.5.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 heudiconv  - DICOM converter with support for structure heuristics
Changes:
 heudiconv (0.5.2-1) unstable; urgency=medium
 .
   * New upstream release
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Accepted nibabel 2.3.1+git51-g1ea7c30f-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 01 Jan 2019 19:53:57 -0500
Source: nibabel
Binary: python-nibabel python3-nibabel python-nibabel-doc
Architecture: source all
Version: 2.3.1+git51-g1ea7c30f-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Closes: 917680
Changes:
 nibabel (2.3.1+git51-g1ea7c30f-1) unstable; urgency=medium
 .
   * Fresh upstream snapshot from rel/2.3.2 branch
 https://github.com/nipy/nibabel/pull/708
 - should resolve incompatibilities with recent release of numpy
   causing " cannot set WRITEABLE flag to True ..." (Closes: #917680)
   * debian/control
 + added (build-)depends on python-bz2file (python2 only)
 + build-depend on dh-python
 - remove obsolete X-*-Python fields
 + b-depend on python{3,}-setuptools since used now, and not pulled
   through depends on older Debian/Ubuntus
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Accepted scikit-learn 0.20.1+dfsg-1 (source all amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 28 Nov 2018 20:44:02 -0500
Source: scikit-learn
Binary: python-sklearn python-sklearn-lib python3-sklearn python3-sklearn-lib 
python-sklearn-doc
Architecture: source all amd64
Version: 0.20.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Yaroslav Halchenko 
Description:
 python-sklearn - Python modules for machine learning and data mining
 python-sklearn-doc - documentation and examples for scikit-learn
 python-sklearn-lib - low-level implementations and bindings for scikit-learn
 python3-sklearn - Python modules for machine learning and data mining
 python3-sklearn-lib - low-level implementations and bindings for scikit-learn 
- Python
Changes:
 scikit-learn (0.20.1+dfsg-1) unstable; urgency=medium
 .
   * New upstream bugfix
   * debian/patches
 - dropping all 00* which were cherrypicked or upstream, and refreshing
   the rest
   * cd to .pybuild to run show_versions()
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Accepted joblib 0.13.0-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 28 Nov 2018 20:45:46 -0500
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.13.0-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.13.0-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted datalad 0.11.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 26 Nov 2018 09:03:36 -0500
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.1-1) unstable; urgency=medium
 .
   * Fresh upstream bugfix/minor release
 - compatibility with the recent annex
 - variety of fixes (long command lines, metadata aggregation, etc)
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Accepted pydicom 1.2.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 23 Nov 2018 17:32:08 -0500
Source: pydicom
Binary: python-pydicom python3-pydicom python-pydicom-doc python-dicom 
python3-dicom
Architecture: source all
Version: 1.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-dicom - transitional package for python-pydicom
 python-pydicom - DICOM medical file reading and writing (Python 2)
 python-pydicom-doc - DICOM medical file reading and writing (documentation)
 python3-dicom - transitional package for python3-pydicom
 python3-pydicom - DICOM medical file reading and writing (Python 3)
Closes: 908555
Changes:
 pydicom (1.2.1-1) unstable; urgency=medium
 .
   * New upstream release
   * Added debian/gbp.conf to point that we use "debian" branch, not master
 and also we use pristine-tar
   * debian/control
 - Removed gdcm from B-Depends and moved under Suggests since it is an
   optional dependency (Closes: #908555)
   * debian/patches
 - refreshed and upstreamed ones removed/disabled
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Accepted mrtrix3 3.0~rc3+git86-g4b523b413-1 (source amd64 all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 05 Sep 2018 10:07:15 -0400
Source: mrtrix3
Binary: mrtrix3 mrtrix3-doc
Architecture: source amd64 all
Version: 3.0~rc3+git86-g4b523b413-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Yaroslav Halchenko 
Description:
 mrtrix3- diffusion-weighted MRI white matter tractography
 mrtrix3-doc - documentation for mrtrix3
Closes: 907978
Changes:
 mrtrix3 (3.0~rc3+git86-g4b523b413-1) unstable; urgency=medium
 .
   * Initial packaging based on mrtrix package (Closes: #907978)
   * Initial packaging for mrtrix3 as a separate source package to
 allow retaining (although with installation conflict) of both
 2 and 3 series
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Accepted neurodebian 0.38.2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 18 Nov 2018 21:35:11 -0500
Source: neurodebian
Binary: neurodebian neurodebian-dev neurodebian-desktop 
neurodebian-archive-keyring neurodebian-freeze neurodebian-popularity-contest
Architecture: source all
Version: 0.38.2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 neurodebian - neuroscience-oriented distribution - repository configuration
 neurodebian-archive-keyring - neuroscience-oriented distribution - GnuPG 
archive keys
 neurodebian-desktop - neuroscience-oriented distribution - desktop integration
 neurodebian-dev - neuroscience-oriented distribution - development tools
 neurodebian-freeze - nd_freeze tool to freeze APT sources to use snapshots
 neurodebian-popularity-contest - neuroscience-oriented distribution - popcon 
integration
Changes:
 neurodebian (0.38.2) unstable; urgency=medium
 .
   * nd_freeze:
 - remove apt lists files if there were none to start with
 - by default now would downgrade already installed packages to the state
   of them in snapshots.  Use --no-downgrade or -n to disable
 - --keep-apt-sources or -k  replaced longer --keep-original-apt-sources
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Accepted neurodebian 0.38.1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 12 Nov 2018 23:50:07 -0500
Source: neurodebian
Binary: neurodebian neurodebian-dev neurodebian-desktop 
neurodebian-archive-keyring neurodebian-freeze neurodebian-popularity-contest
Architecture: source all
Version: 0.38.1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 neurodebian - neuroscience-oriented distribution - repository configuration
 neurodebian-archive-keyring - neuroscience-oriented distribution - GnuPG 
archive keys
 neurodebian-desktop - neuroscience-oriented distribution - desktop integration
 neurodebian-dev - neuroscience-oriented distribution - development tools
 neurodebian-freeze - nd_freeze tool to freeze APT sources to use snapshots
 neurodebian-popularity-contest - neuroscience-oriented distribution - popcon 
integration
Changes:
 neurodebian (0.38.1) unstable; urgency=medium
 .
   * Make ubuntu-keyring only list in Ubuntu (and its derivatives
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Accepted scikit-learn 0.20.0+dfsg-2 (source all amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 07 Nov 2018 21:29:46 -0500
Source: scikit-learn
Binary: python-sklearn python-sklearn-lib python3-sklearn python3-sklearn-lib 
python-sklearn-doc
Architecture: source all amd64
Version: 0.20.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Yaroslav Halchenko 
Description:
 python-sklearn - Python modules for machine learning and data mining
 python-sklearn-doc - documentation and examples for scikit-learn
 python-sklearn-lib - low-level implementations and bindings for scikit-learn
 python3-sklearn - Python modules for machine learning and data mining
 python3-sklearn-lib - low-level implementations and bindings for scikit-learn 
- Python
Changes:
 scikit-learn (0.20.0+dfsg-2) unstable; urgency=medium
 .
   [ Yaroslav Halchenko ]
   * dump debhelper compat to 9 to ease backportability. Added a note to
 debian/README.source
 - with that it correctly places numerous examples within -doc package
   instead of a selected pure python- one
   * debian/rules
 - removed running doctests on python3 as well -- output fluctuates across
   platforms and releases
 - skip tests marked "network" (requiring download of some test datasets)
 - invoke show_versions() for all pythons before running tests
   * debian/patches
 + Skip some tests if joblib is forced into serial mode
   (from https://github.com/scikit-learn/scikit-learn/pull/12496)
   0001-BF-skip-test_backend_respected-if-joblib-is-forced-i.patch
   0002-BF-TST-skip-test_lr_liblinear_warning-in-joblib-seri.patch
 .
   [ Mo Zhou ]
   * debian/rules
 - skip some tests which show problems on some architectures
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Accepted dcmstack 0.7-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 15 Oct 2018 16:48:07 -0400
Source: dcmstack
Binary: python-dcmstack python3-dcmstack
Architecture: source all
Version: 0.7-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-dcmstack - DICOM to NIfTI conversion
 python3-dcmstack - DICOM to NIfTI conversion - python3 package
Changes:
 dcmstack (0.7-1) unstable; urgency=medium
 .
   * Fresh upstream release
 + includes python3 support. python3-dcmstack binary package was added
   with necessary changes to debian/{control,rules}
 - debian/patches/* - upstreamed now
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Accepted patsy 0.5.0+git13-g54dcf7b-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 27 Oct 2018 23:16:29 -0400
Source: patsy
Binary: python-patsy python3-patsy python-patsy-doc
Architecture: source all
Version: 0.5.0+git13-g54dcf7b-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-patsy - statistical models in Python using symbolic formulas
 python-patsy-doc - documentation and examples for patsy
 python3-patsy - statistical models in Python using symbolic formulas
Closes: 907335
Changes:
 patsy (0.5.0+git13-g54dcf7b-1) unstable; urgency=medium
 .
   * New upstream snapshot from v0.5.0-13-g54dcf7b
 - addresses python 3.7 incompatibility (Closes: #907335)
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Accepted joblib 0.12.5-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 27 Oct 2018 20:54:08 -0400
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.12.5-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.12.5-1) unstable; urgency=medium
 .
   * Fresh upstream minor release
   * debian/control
 + psutil to B-Depends and Recommends - could optionally be used to
   better track child processes for termination by loky
   * debian/copyright
 + records for joblib/externals
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Accepted datalad 0.11.0-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 23 Oct 2018 09:30:36 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.11.0-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.11.0-1) unstable; urgency=medium
 .
   [ Jelmer Vernooij ]
   * Move source package lintian overrides to debian/source.
 .
   [ Yaroslav Halchenko ]
   * New upstream release
 - requires git-annex >= 6.20180913
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Accepted nibabel 2.3.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 17 Oct 2018 23:45:47 -0400
Source: nibabel
Binary: python-nibabel python3-nibabel python-nibabel-doc
Architecture: source all
Version: 2.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nibabel - Python bindings to various neuroimaging data formats
 python-nibabel-doc - documentation for NiBabel
 python3-nibabel - Python3 bindings to various neuroimaging data formats
Closes: 909990
Changes:
 nibabel (2.3.1-1) unstable; urgency=medium
 .
   * Fresh upstream release
 - should address failures in examples (Closes: #909990)
   * debian/control
 * unify Suggests and Recommends between python{3,}-nibabel pkgs:
   - docs and test helpers are in Suggests, the rest in Recommends
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Accepted nipype 1.1.3-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 08 Oct 2018 10:57:16 -0400
Source: nipype
Binary: python-nipype python-nipype-doc
Architecture: source all
Version: 1.1.3-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipype - Neuroimaging data analysis pipelines in Python
 python-nipype-doc - Neuroimaging data analysis pipelines in Python -- 
documentation
Changes:
 nipype (1.1.3-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian/control
 + Suggest python-bids
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Accepted sympy 1.3-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 02 Oct 2018 10:01:44 -0400
Source: sympy
Binary: isympy3 isympy-common python-sympy python3-sympy python-sympy-doc
Architecture: source all
Version: 1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yaroslav Halchenko 
Description:
 isympy-common - Python shell for SymPy
 isympy3- Python3 shell for SymPy
 python-sympy - Computer Algebra System (CAS) in Python
 python-sympy-doc - Computer Algebra System (CAS) in Python - Documentation
 python3-sympy - Computer Algebra System (CAS) in Python (Python3)
Closes: 909333
Changes:
 sympy (1.3-1) unstable; urgency=medium
 .
   * Fresh upstream (Closes: #909333)
 + fixes the issue with undefined name in exception handling
   (NameError: global name 'sub_expr' is not defined)
   which causes FTBFS in downstream projects (see e.g. #906388)
   * debian/watch
 - do not invoke debian/get_newest_source.sh to repack the tarball just
   to rename leading dir -- should not matter
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Accepted pynwb 0.5.1-1 (source all) into unstable, unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 20 Sep 2018 01:19:06 -0400
Source: pynwb
Binary: python-pynwb python3-pynwb
Architecture: source all
Version: 0.5.1-1
Distribution: unstable
Urgency: low
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-pynwb - Python library for working with Neurodata in the NWB format
 python3-pynwb - Python library for working with Neurodata in the NWB format
Closes: 908531
Changes:
 pynwb (0.5.1-1) unstable; urgency=low
 .
   * Initial source package automatically created by stdeb 0.8.5
 (Closes: #908531)
   * Upstream sources generated from git repository until tests are
 included in source release
 (see https://github.com/NeurodataWithoutBorders/pynwb/pull/622)
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Accepted datalad 0.10.3.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 13 Sep 2018 12:17:18 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.10.3.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.10.3.1-1) unstable; urgency=medium
 .
   [ Jelmer Vernooij ]
   * Use secure URI in Vcs control header.
 .
   [ Yaroslav Halchenko ]
   * Emergency upstream bugfix release with correct version assigned
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Accepted datalad 0.10.3-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 12 Sep 2018 14:14:31 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.10.3-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Changes:
 datalad (0.10.3-1) unstable; urgency=medium
 .
   * New upstream release
   * debian/control
 - make python3-distutils alternative to libpython3-stdlib (<=3.6.4~rc1-2)
   where it was split out (to ease backporting)
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Bug#908531: ITP: pynwb -- Python library for working with Neurodata in the NWB format

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: pynwb
  Version : 0.4.1
  Upstream Author : PyNWB Team
* URL : https://github.com/NeurodataWithoutBorders/pynwb
* License : BSD-3 with additional statement
  Programming Lang: Python
  Description : Python library for working with Neurodata in the NWB format

 PyNWB is a Python package for working with NWB files. It provides a
 high-level API for efficiently working with Neurodata stored in the
 NWB format.
 .
 Neurodata Without Borders: Neurophysiology (NWB:N) is a project to
 develop a unified data format for cellular-based neurophysiology
 data, focused on the dynamics of groups of neurons measured under a
 large range of experimental conditions.

 I hope to place it under Debian-Science (or Debian-Med?) team
 maintenance.

Accepted reprozip 1.0.14-2 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 04 Sep 2018 12:44:40 -0400
Source: reprozip
Binary: reprozip python3-reprozip python3-reprozip-dbg
Architecture: source amd64 all
Version: 1.0.14-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yaroslav Halchenko 
Description:
 python3-reprozip - modules for the ReproZip packer
 python3-reprozip-dbg - debug extensions for the ReproZip packer
 reprozip   - tool for reproducing scientific experiments (packer)
Changes:
 reprozip (1.0.14-2) unstable; urgency=medium
 .
   * Use any-linux-amd64 any-linux-i386 instead of linux-any since ATM
 builds/supported only on amd64 i386 x32 ports
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Accepted joblib 0.12.3-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 04 Sep 2018 12:42:16 -0400
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.12.3-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.12.3-1) unstable; urgency=medium
 .
   * Fresh upstream minor release
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Bug#907978: ITP: mrtrix3 -- diffusion-weighted MRI white matter tractography

[Yaroslav Halchenko]

Package: wnpp
Severity: wishlist
Owner: Yaroslav Halchenko 

* Package name: mrtrix3
  Version : 3.0~rc3+git86-g4b523b413
  Upstream Author : Mrtrix3 Team
* URL : http://www.mrtrix3.org
* License : GPL-3
  Programming Lang: C++
  Description : diffusion-weighted MRI white matter tractography

 Set of tools to perform diffusion-weighted MRI white matter tractography of the
 brain in the presence of crossing fibres, using Constrained Spherical
 Deconvolution, and a probabilisitic streamlines algorithm. Magnetic resonance
 images in DICOM, ANALYZE, or uncompressed NIfTI format are supported.

 This package is to complement mrtrix package - the older series of the tools.
 Depending on the vital signs of the old 0.2 series we might like to keep it in
 Debian for reproducibility etc, especially given that 3.x was not yet fully
 released.  That is why new (versioned) source and binary packages

Accepted reprozip 1.0.14-1 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 30 Aug 2018 09:44:11 -0400
Source: reprozip
Binary: reprozip python3-reprozip python3-reprozip-dbg
Architecture: source amd64 all
Version: 1.0.14-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Yaroslav Halchenko 
Description:
 python3-reprozip - modules for the ReproZip packer
 python3-reprozip-dbg - debug extensions for the ReproZip packer
 reprozip   - tool for reproducing scientific experiments (packer)
Changes:
 reprozip (1.0.14-1) unstable; urgency=medium
 .
   * New upstream version
   * debian/control
 - adjusted VCS fields to point to salsa
 - boosted policy compliance claim to 4.2.1
 - replaced extra priority with optional for -dbg pkg
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Accepted connectome-workbench 1.3.2-1 (source amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 28 Aug 2018 21:45:36 -0400
Source: connectome-workbench
Binary: connectome-workbench connectome-workbench-dbg
Architecture: source amd64
Version: 1.3.2-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 connectome-workbench - brain visualization, analysis and discovery tool
 connectome-workbench-dbg - brain visualization, analysis and discovery tool -- 
debug symbols
Changes:
 connectome-workbench (1.3.2-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted joblib 0.12.2-2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
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Source: joblib
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Version: 0.12.2-2
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.12.2-2) unstable; urgency=medium
 .
   * debian/control,compat
 - boost to compat 9
   * CP patch to remove fragile test failing on busy/build boxes
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Accepted mrtrix 0.2.13-1 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Fri, 24 Aug 2018 17:32:48 -0400
Source: mrtrix
Binary: mrtrix mrtrix-doc
Architecture: source amd64 all
Version: 0.2.13-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 mrtrix - diffusion-weighted MRI white matter tractography
 mrtrix-doc - documentation for mrtrix
Changes:
 mrtrix (0.2.13-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian/rules
 + export CPP_MARCH= to avoid addition of --march=native by upstream.
   (patch debian_build_cfg was adjusted since now we can avoid patching)
   * debian/patches
 - glib-single-include.patch and size_t-ftbfs -- fully upstreamed
 - fix-build-error-round -- upstream provided an alternative resolution
   * debian/mrtrix-doc.install
 * docs now are under src/doc
   * debian/rules
 * remove autogenerated lib/svn_revision.h upon clean
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Accepted joblib 0.12.2-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 21 Aug 2018 13:33:07 -0400
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.12.2-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.12.2-1) unstable; urgency=medium
 .
   * Fresh upstream release
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Accepted nipype 1.1.1-2 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Thu, 09 Aug 2018 14:26:03 -0400
Source: nipype
Binary: python-nipype python-nipype-doc
Architecture: source all
Version: 1.1.1-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipype - Neuroimaging data analysis pipelines in Python
 python-nipype-doc - Neuroimaging data analysis pipelines in Python -- 
documentation
Changes:
 nipype (1.1.1-2) unstable; urgency=medium
 .
   * debian/control
 - point vcs fields to salsa
   * debian/patches/deb_simplify_requires temporary patch to resolve
 uninstallable state on older debian/ubuntus
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Accepted nipype 1.1.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 03 Aug 2018 13:00:43 -0400
Source: nipype
Binary: python-nipype python-nipype-doc
Architecture: source all
Version: 1.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 python-nipype - Neuroimaging data analysis pipelines in Python
 python-nipype-doc - Neuroimaging data analysis pipelines in Python -- 
documentation
Changes:
 nipype (1.1.1-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian/control
 + python-concurrent.futures and python-pydot to B-Depends and
   Depends for python-nipype
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Accepted datalad 0.10.2-2 (source all) into unstable

[Yaroslav Halchenko]

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Hash: SHA256

Format: 1.8
Date: Thu, 02 Aug 2018 13:58:11 -0400
Source: datalad
Binary: datalad python-datalad python3-datalad
Architecture: source all
Version: 0.10.2-2
Distribution: unstable
Urgency: medium
Maintainer: NeuroDebian Team 
Changed-By: Yaroslav Halchenko 
Description:
 datalad- data files management and distribution platform
 python-datalad - data files management and distribution platform
 python3-datalad - data files management and distribution platform
Closes: 905293
Changes:
 datalad (0.10.2-2) unstable; urgency=medium
 .
   * debian/control
 + python3-distutils to B-Depends and Depends of python3-datalad
   (Closes: #905293). Thanks Andreas Beckmann for the report
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Accepted singularity-container 2.5.2-2 (source amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 10 Jul 2018 14:41:56 -0400
Source: singularity-container
Binary: singularity-container
Architecture: source amd64
Version: 2.5.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian HPC Team 
Changed-By: Yaroslav Halchenko 
Description:
 singularity-container - container platform focused on supporting "Mobility of 
Compute"
Changes:
 singularity-container (2.5.2-2) unstable; urgency=medium
 .
   * d/control
 + depend on ca-certificates since required to pull images from shub://
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Accepted tigervnc 1.9.0+dfsg-1 (source amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 29 Jul 2018 09:31:03 -0400
Source: tigervnc
Binary: tigervnc-common tigervnc-scraping-server tigervnc-standalone-server 
tigervnc-xorg-extension tigervnc-viewer
Architecture: source amd64
Version: 1.9.0+dfsg-1
Distribution: unstable
Urgency: high
Maintainer: TigerVNC Packaging Team 
Changed-By: Yaroslav Halchenko 
Description:
 tigervnc-common - Virtual network computing; Common software needed by servers
 tigervnc-scraping-server - Virtual network computing server performing X 
screen scraping
 tigervnc-standalone-server - Standalone virtual network computing server
 tigervnc-viewer - Virtual network computing client for X
 tigervnc-xorg-extension - Virtual network computing X server extension
Closes: 866061 867175 873151 877780 881276
Changes:
 tigervnc (1.9.0+dfsg-1) unstable; urgency=high
 .
   [ Joachim Falk ]
   * Fixed typo in tigervncserver wrapper script (Closes: #881276).
   * In /etc/X11/Xvnc-session, $SHELL should be quoted (Closes: #866061).
   * Updated Vcs-* fields in control to use new gitlab at salsa.debian.org.
   * Fixed underlying reason for bug #880308. Unfortunately, quoting in
 /usr/share/xserver-xorg/configure_flags.mk is fucked up in buster and
 ${xxx} is not escaped correctly. We now work around this problem
 and now again use consistent configure flags to build Xtigervnc.
   * Fresh upstream TigerVNC 1.9 (Closes: #877780 and Closes: #873151).
 .
   [ Philipp Wolski ]
   * Added rfbport to supported commandline arguments for
 tightvncserver wrapper (Closes: #867175)
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Accepted pandas 0.23.3-1 (source all amd64) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 28 Jul 2018 00:39:32 -0400
Source: pandas
Binary: python-pandas python3-pandas python-pandas-doc python-pandas-lib 
python3-pandas-lib
Architecture: source all amd64
Version: 0.23.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Yaroslav Halchenko 
Description:
 python-pandas - data structures for "relational" or "labeled" data
 python-pandas-doc - documentation and examples for pandas
 python-pandas-lib - low-level implementations and bindings for pandas
 python3-pandas - data structures for "relational" or "labeled" data - Python 3
 python3-pandas-lib - low-level implementations and bindings for pandas - 
Python 3
Changes:
 pandas (0.23.3-1) unstable; urgency=medium
 .
   * New upstream release
   * debian/patches
 - many upstreamed patches are removed and others refreshed
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Accepted vowpal-wabbit 8.6.1.dfsg1-1 (source amd64 all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Jul 2018 19:27:03 -0400
Source: vowpal-wabbit
Binary: vowpal-wabbit libvw0 libvw-dev vowpal-wabbit-dbg vowpal-wabbit-doc
Architecture: source amd64 all
Version: 8.6.1.dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 libvw-dev  - fast and scalable online machine learning algorithm - development
 libvw0 - fast and scalable online machine learning algorithm - dynamic lib
 vowpal-wabbit - fast and scalable online machine learning algorithm
 vowpal-wabbit-dbg - fast and scalable online machine learning algorithm - 
debug files
 vowpal-wabbit-doc - fast and scalable online machine learning algorithm - 
documentati
Changes:
 vowpal-wabbit (8.6.1.dfsg1-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian/patches
 + deb_skip_42 to skip test 42 for now since fails on some 32bit
   elderlies https://github.com/JohnLangford/vowpal_wabbit/issues/1553
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Accepted joblib 0.12.1-1 (source all) into unstable

[Yaroslav Halchenko]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 27 Jul 2018 19:34:47 -0400
Source: joblib
Binary: python-joblib python3-joblib
Architecture: source all
Version: 0.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: Yaroslav Halchenko 
Changed-By: Yaroslav Halchenko 
Description:
 python-joblib - tools to provide lightweight pipelining in Python
 python3-joblib - tools to provide lightweight pipelining in Python
Changes:
 joblib (0.12.1-1) unstable; urgency=medium
 .
   * Fresh upstream release
   * debian
 + specify PYTHONPATH=$(CURDIR) while running the tests
 + python-lz4 into b-depends and Recommends for python2 pkg
 + cython{,3} into b-depends so that joblib/test/_openmp_test_helper
   can setup
   * debian/patches
 + deb_collect_ignore_setup
   to avoid failing to collect tests due to various troubles on older
   systems
   * debian/control
 + procps to b-depends and depends
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