Re: [Insight-developers] ITK 3.20.0 python WrapITK wrappers fail to build: too big?
On Wed, Feb 09, 2011 at 10:15:12AM +0100, Ga?tan Lehmann wrote: Steve, Luis, Splitting ImageToImageFilterB into smaller modules seems to be the way to go in ITK v3. The attached patch should help! Thanks, Gaetan! I'm building ITK with this patch now for upload to Debian so we'll know in a few days whether it does the trick. Thanks again, -Steve signature.asc Description: Digital signature
Re: [Insight-developers] ITK 3.20.0 python WrapITK wrappers fail to build: too big?
Steve, Luis, Splitting ImageToImageFilterB into smaller modules seems to be the way to go in ITK v3. The attached patch should help! Fortunately, the wrapping in ITK v4 produces less code than the wrapping in ITK v3 – more than 2 times less — so we shouldn't have to do that. Gaëtan patch Description: Binary data Le 9 févr. 11 à 03:10, Luis Ibanez a écrit : Hi Steve, It looks like we need to split the ImageToImageFilterB module into smaller pieces. Most likely, adding an ImageToImageFilterC module... Gaetan: Any suggestions ? Luis On Tue, Feb 8, 2011 at 8:37 PM, Steve M. Robbins st...@sumost.ca wrote: Hi, The Debian build of ITK 3.20.0 fails to build on the powerpc build daemon [1] with the diagnostic: [ 23%] Building CXX object Wrapping/WrapITK/Modules/Base/CMakeFiles/ _BasePython.dir/wrap_itkImageToImageFilterBPython.o cd /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/ Modules/Base /usr/bin/g++ -D_BasePython_EXPORTS -DSWIG_GLOBAL - Wno-deprecated -Wno-deprecated -ftemplate-depth-50 -Wall -Wno- deprecated -w -ftemplate-depth-50 -Wall -Wno-deprecated -O3 - DNDEBUG -fPIC -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/Code/Review/Statistics -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ Review -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/core -I/ build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/vcl -I/ build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/v3p/ netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/Utilities/vxl/core -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/v3p/netlib -I/build/ buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities -I/build/ buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Utilities/itkExtHdrs -I/build/buildd-insighttoolkit_3.20.0-6- powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/znzlib -I/ build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/Utilities/nifti/niftilib -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/expat - I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/DICOMParser - I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/Utilities/DICOMParser -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- powerpc-linux-gnu/Utilities/NrrdIO -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/Utilities/MetaIO -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ SpatialObject -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/Code/Numerics/NeuralNetworks -I/build/ buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/ Code/Numerics/FEM -I/build/buildd-insighttoolkit_3.20.0-6-powerpc- m2NGDH/insighttoolkit-3.20.0/Code/IO -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ Numerics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/Code/Common -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/ BasicFilters -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/ insighttoolkit-3.20.0/Code/Algorithms -I/build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- powerpc-linux-gnu -I/usr/include/gdcm-2.0 -I/usr/include/vtk-5.4 -I/ usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/ include/tcl8.5 -I/usr/include/python2.6 -I/usr/lib/jvm/default-java/ include -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/lib/ jvm/java-6-openjdk/include -I/build/buildd-insighttoolkit_3.20.0-6- powerpc-m2NGDH/insighttoolkit-3.20.0/Wrapping/WrapITK/Modules/ Base -o CMakeFiles/_BasePython.dir/ wrap_itkImageToImageFilterBPython.o -c /build/buildd- insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj- powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base/ wrap_itkImageToImageFilterBPython.cxx /tmp/cchG87Lf.s: Assembler messages: /tmp/cchG87Lf.s:2649452: Error: operand out of range
ITK 3.20.0 python WrapITK wrappers fail to build: too big?
Hi, The Debian build of ITK 3.20.0 fails to build on the powerpc build daemon [1] with the diagnostic: [ 23%] Building CXX object Wrapping/WrapITK/Modules/Base/CMakeFiles/_BasePython.dir/wrap_itkImageToImageFilterBPython.o cd /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base /usr/bin/g++ -D_BasePython_EXPORTS -DSWIG_GLOBAL -Wno-deprecated -Wno-deprecated -ftemplate-depth-50 -Wall -Wno-deprecated -w -ftemplate-depth-50 -Wall -Wno-deprecated -O3 -DNDEBUG -fPIC -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Review/Statistics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Review -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/core -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/v3p/netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/core -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/v3p/netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/itkExtHdrs -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/znzlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/niftilib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/DICOMParser -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/DICOMParser -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/MetaIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/SpatialObject -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics/NeuralNetworks -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics/FEM -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/IO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Common -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/BasicFilters -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Algorithms -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu -I/usr/include/gdcm-2.0 -I/usr/include/vtk-5.4 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/tcl8.5 -I/usr/include/python2.6 -I/usr/lib/jvm/default-java/include -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/lib/jvm/java-6-openjdk/include -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Wrapping/WrapITK/Modules/Base -o CMakeFiles/_BasePython.dir/wrap_itkImageToImageFilterBPython.o -c /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base/wrap_itkImageToImageFilterBPython.cxx /tmp/cchG87Lf.s: Assembler messages: /tmp/cchG87Lf.s:2649452: Error: operand out of range (0x8008 is not between 0x8000 and 0x7fff) /tmp/cchG87Lf.s:2649474: Error: operand out of range (0x8004 is not between 0x8000 and 0x7fff) [ ... repeated dozens of times ... ] Google suggests [2] this is a symptom of some table overflowing. Any suggestions on how to work around this? [1] https://buildd.debian.org/fetch.cgi?pkg=insighttoolkitarch=powerpcver=3.20.0-6stamp=1297198904file=logas=raw [2] https://bugzilla.redhat.com/show_bug.cgi?id=427700 http://gcc.gnu.org/bugzilla/show_bug.cgi?id=28904 Thanks, -Steve signature.asc Description: Digital signature
Re: [Insight-developers] ITK 3.20.0 python WrapITK wrappers fail to build: too big?
Hi Steve, It looks like we need to split the ImageToImageFilterB module into smaller pieces. Most likely, adding an ImageToImageFilterC module... Gaetan: Any suggestions ? Luis On Tue, Feb 8, 2011 at 8:37 PM, Steve M. Robbins st...@sumost.ca wrote: Hi, The Debian build of ITK 3.20.0 fails to build on the powerpc build daemon [1] with the diagnostic: [ 23%] Building CXX object Wrapping/WrapITK/Modules/Base/CMakeFiles/_BasePython.dir/wrap_itkImageToImageFilterBPython.o cd /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base /usr/bin/g++ -D_BasePython_EXPORTS -DSWIG_GLOBAL -Wno-deprecated -Wno-deprecated -ftemplate-depth-50 -Wall -Wno-deprecated -w -ftemplate-depth-50 -Wall -Wno-deprecated -O3 -DNDEBUG -fPIC -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Review/Statistics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Review -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/core -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/vxl/v3p/netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/core -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/vcl -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/vxl/v3p/netlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/itkExtHdrs -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/znzlib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/nifti/niftilib -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/expat -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/DICOMParser -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/DICOMParser -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/NrrdIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Utilities/MetaIO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/SpatialObject -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics/NeuralNetworks -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics/FEM -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/IO -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Numerics -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Common -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/BasicFilters -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Code/Algorithms -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu -I/usr/include/gdcm-2.0 -I/usr/include/vtk-5.4 -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/tcl8.5 -I/usr/include/python2.6 -I/usr/lib/jvm/default-java/include -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/lib/jvm/java-6-openjdk/include -I/build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/Wrapping/WrapITK/Modules/Base -o CMakeFiles/_BasePython.dir/wrap_itkImageToImageFilterBPython.o -c /build/buildd-insighttoolkit_3.20.0-6-powerpc-m2NGDH/insighttoolkit-3.20.0/obj-powerpc-linux-gnu/Wrapping/WrapITK/Modules/Base/wrap_itkImageToImageFilterBPython.cxx /tmp/cchG87Lf.s: Assembler messages: /tmp/cchG87Lf.s:2649452: Error: operand out of range (0x8008 is not between 0x8000 and 0x7fff) /tmp/cchG87Lf.s:2649474: Error: operand out of range (0x8004 is not between 0x8000 and 0x7fff) [ ... repeated dozens of times ... ] Google suggests [2] this is a symptom of some table overflowing. Any suggestions on how to work around this? [1]
