Bug#890667: lintian: Missing link between cwl-runner interpreter and package cwltool or virtual package cwl-runner

[Chris Lamb]

tags 890667 + pending
thanks

Michael Crusoe wrote:

> I only recently added the `cwl-runner` virtual package

Ah, I was reading cwl-runner as cwltool!  Thanks for the clarification;
I have fixed this in Git, pending upload:

  
https://anonscm.debian.org/git/lintian/lintian.git/commit/?id=aed3b0d625fcaa4d839dd800051945927b99c71c


Regards,

-- 
  ,''`.
 : :'  : Chris Lamb
 `. `'`  la...@debian.org / chris-lamb.co.uk
   `-

Bug#890667: lintian: Missing link between cwl-runner interpreter and package cwltool or virtual package cwl-runner

[Michael Crusoe]

Thank you Chris for your response.

I only recently added the `cwl-runner` virtual package to cwltool as we are
about to introduce another CWL runner, toil, to the archive soon.

Here's a Lintian error from the latest seqan-apps package:

E: seqan-apps: missing-dep-for-interpreter cwl-runner => cwltool
(usr/share/commonwl/alf.cwl) #!cwl-runner
N:
N:You used an interpreter for a script that is not in an essential
N:package. In most cases, you will need to add a Dependency on the
package
N:that contains the interpreter. If the dependency is already present,
N:please file a bug against Lintian with the details of your package so
N:that its database can be updated.
N:
N:In some cases a weaker relationship, such as Suggests or Recommends,
N:will be more appropriate.
N:
N:Severity: important, Certainty: possible
N:
N:Check: scripts, Type: binary


2018-02-17 21:19 GMT+02:00 Chris Lamb :

> tags 890667 + moreinfo
> thanks
>
> Hi Michael,
>
> > Please update Lintian so that it knows about "cwl-runner" interpreters:
> they
> > provide the "cwl-runner" virtual package.
>
> Doesn't Lintian already know about them? :)  This should have been
> introduced
> via https://bugs.debian.org/851126.
>
>
> Best wishes,
>
> --
>   ,''`.
>  : :'  : Chris Lamb
>  `. `'`  la...@debian.org / chris-lamb.co.uk
>`-
>



-- 
Michael R. Crusoe
Co-founder & Lead, Common Workflow Language project

Direktorius, VšĮ "Darbo eigos", Vilnius, Lithuania
https://orcid.org/-0002-2961-9670

m...@commonwl.org
+1 480 627 9108

Bug#890667: lintian: Missing link between cwl-runner interpreter and package cwltool or virtual package cwl-runner

[Chris Lamb]

tags 890667 + moreinfo
thanks

Hi Michael,

> Please update Lintian so that it knows about "cwl-runner" interpreters: they
> provide the "cwl-runner" virtual package.

Doesn't Lintian already know about them? :)  This should have been introduced
via https://bugs.debian.org/851126.


Best wishes,

-- 
  ,''`.
 : :'  : Chris Lamb
 `. `'`  la...@debian.org / chris-lamb.co.uk
   `-

Processed: Re: Bug#890667: lintian: Missing link between cwl-runner interpreter and package cwltool or virtual package cwl-runner

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 890667 + moreinfo
Bug #890667 [lintian] lintian: Missing link between cwl-runner interpreter and 
package cwltool or virtual package cwl-runner
Added tag(s) moreinfo.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
890667: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=890667
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#890667: lintian: Missing link between cwl-runner interpreter and package cwltool or virtual package cwl-runner

[Michael R. Crusoe]

Package: lintian
Version: 2.5.75
Severity: normal

Dear Maintainer,

Please update Lintian so that it knows about "cwl-runner" interpreters: they
provide the "cwl-runner" virtual package. An example is the "cwltool" package
and the upcoming "toil" package.

Cheers,

-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.14.0-3-amd64 (SMP w/8 CPU cores)
Locale: LANG=ro_RO.UTF-8, LC_CTYPE=ro_RO.UTF-8 (charmap=UTF-8), 
LANGUAGE=ro_RO.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages lintian depends on:
ii  binutils  2.30-5
ii  bzip2 1.0.6-8.1
ii  diffstat  1.61-1+b1
ii  dpkg  1.19.0.5
ii  file  1:5.32-2
ii  gettext   0.19.8.1-4
ii  intltool-debian   0.35.0+20060710.4
ii  libapt-pkg-perl   0.1.33
ii  libarchive-zip-perl   1.60-1
ii  libclass-accessor-perl0.51-1
ii  libclone-perl 0.39-1
ii  libdpkg-perl  1.19.0.5
ii  libemail-valid-perl   1.202-1
ii  libfile-basedir-perl  0.07-1
ii  libipc-run-perl   0.96-1
ii  liblist-moreutils-perl0.416-1+b3
ii  libparse-debianchangelog-perl 1.2.0-12
ii  libperl5.26 [libdigest-sha-perl]  5.26.1-4+b1
ii  libtext-levenshtein-perl  0.13-1
ii  libtimedate-perl  2.3000-2
ii  liburi-perl   1.73-1
ii  libxml-simple-perl2.24-1
ii  libyaml-libyaml-perl  0.69+repack-1
ii  man-db2.8.1-1
ii  patchutils0.3.4-2
ii  perl  5.26.1-4+b1
ii  t1utils   1.41-2
ii  xz-utils  5.2.2-1.3

Versions of packages lintian recommends:
ii  libperlio-gzip-perl  0.19-1+b4

Versions of packages lintian suggests:
ii  binutils-multiarch 2.30-5
ii  dpkg-dev   1.19.0.5
ii  libhtml-parser-perl3.72-3+b2
ii  libtext-template-perl  1.47-1

-- no debconf information