Re: Anybody able to have a 20min talk at 3rd Swiss Galaxy Workshop, Thursday, October 20th, Freiburg (Germany)?

[Roland Fehrenbacher]

> "A" == Andreas Tille  writes:

Hi Andreas,

A> Hi, I was invited to

A>https://wiki.galaxyproject.org/Events/Switzerland2016

A> to have a short talk about Debian Med.  Unfortunately I can not
A> make it due to some scheduling conflict.  I wonder whether
A> somebody else from the Debian Med team might be able to go.  I'd
A> support this by some slides if needed.

if I can use your slides for the initial 2/3 of the talk and if
it's OK if I spend the remaining 1/3 on the Qlustar support of DebMed,
I'd take over.

Best,

Roland

---
http://www.q-leap.com / http://qlustar.com
  --- HPC / Storage / Cloud Linux Cluster OS ---

[MoM] Re: Packaging deepnano

[Andreas Tille]

Hi Çağrı,

On Thu, Oct 13, 2016 at 01:23:56PM +0300, Çağrı ULAŞ wrote:
> I'd like to pack deepnano. Is there any info about the package (like
> emperor).

On the web page you have picked the package from you can find on the
right hand side in the yellow box some metadata.  One is the hint to
VCS which gives a link to

   https://anonscm.debian.org/cgit/debian-med/deepnano.git

:-)

> And what i have to do next?

Follow Debian Med policy to get a login to alioth.debian.org and read
some basic documents which are mentioned on the MoM page.

> After my package is become definite, I'll add my name into list on MoM site.

Fine.  I think there should not be that much work left for deepnano any
more.  I just left it alone when the user prefered some other software
over this one (see my comment in d/changelog).

I think the best way to start would be to contact the upstream author
and ask for adding some release tags which is always way more convenient
than to package random Git commits.

Hope this helps so far - feel free to ask for more details

Andreas.

-- 
http://fam-tille.de

Packaging deepnano

[Çağrı ULAŞ]

Hi Andreas,

I'd like to pack deepnano. Is there any info about the package (like 
emperor). And what i have to do next?


After my package is become definite, I'll add my name into list on MoM 
site.


Best Regards

Çağrı ULAŞ
about.me/cagriulas

Re: [GSoC] Phyml test issues

[Andreas Tille]

Hi Canberk,

On Thu, Oct 13, 2016 at 12:06:15AM +0300, Canberk Koç wrote:
> I made some changes and commit phyml. Test seems to give pass now can you
> please check it.

Looks good now so I've uploaded phyml.

> I will send some information to developer tomorrow.

Thanks for caring for this.
 
I'll keep on now with the established practice to set a todo list based
on the popularity of packages:

 njplot (https://anonscm.debian.org/git/debian-med/njplot.git)
 sim4
 dialign-t
 poa
 proda

These were on the old list ranking higher with popcon which has changed
interestingly over the last two monthes

 macsyfinder
 picard-tools
 filo

It would be great if you could continue with these if your time permits.

May be its also a good idea if you sit together with your friends and
let them see what you do.  This could be a quite helpful lesson for them
to learn the packaging workflow.

Kind regards

 Andreas.

-- 
http://fam-tille.de

Re: [MoM] packaging emperor

[Andreas Tille]

Hi,

On Wed, Oct 12, 2016 at 11:39:44PM -0700, Afif Elghraoui wrote:
> 
> Thanks for pointing this out, Andreas. I went ahead and did this
> conversion. Even if Kerim is comfortable with SVN, I am not so much. The
> repository URL is now:
> 
> ssh://git.debian.org/git/debian-med/emperor.git

Perfect.  I removed the remainings from SVN.  Usually I drop a
README.status but this package was never released so nobody will really
miss it there. :-)
 
> Kerim, I would suggest now that you file an intent to package emperor.
> See . Andreas
> likes to do this after packaging is completed, but I think it helps to
> have it early in order to log progress of the packaging, even if it does
> not get completed anytime soon.

Just a note: Its perfectly correct to teach newcomers the right
behaviour to ITP soon.  There is no point in sticking to my personal
decision to ITP quite late in the packaging process.
 
> Once that is up, I can look for old discussion threads regarding
> Andreas' previous packaging effort and post them to the log for reference.

I think there is not much left.  I'd rather start with the new upstream
version (which is not reported by d/watch since letters in "beta" are not
checked for - which might be right or wrong depending from your decision
whether we intend to package those beta version or not). 

Afif, thanks for volunteering to mentor.

Have fun with MoM both

 Andreas.

-- 
http://fam-tille.de

Re: [MoM] packaging emperor

[Afif Elghraoui]

Hi, Kerim and Andreas,

على الأربعاء 12 تشرين الأول 2016 ‫12:34، كتب Andreas Tille:
> Hi Kerim,
> 
> On Wed, Oct 12, 2016 at 09:37:43PM +0300, Kerim Ölçer wrote:
>> Hi Afif
> 
> I do not want to stop Afif but meanwhile I have some hints:
> 
>> i chose emperor https://github.com/biocore/emperor/

Great!

>> where can i find example for python packaging
> 
> I think there is quite some packaging stuff for emperor in Debian Med
> SVN[1].  I once converted several projects from SVN to Git since Canberk
> was not comfortable with SVN.  Since I was doing something on emperor
> in the past I'd volunteer to do this conversion if needed.  Just ask me
> to do so.
> 

Thanks for pointing this out, Andreas. I went ahead and did this
conversion. Even if Kerim is comfortable with SVN, I am not so much. The
repository URL is now:

ssh://git.debian.org/git/debian-med/emperor.git

> I admit I do not remember why I stoped with the packaging of emperor.
> It might be there were some compressed JavaScript files with no
> uncompressed source.  In any case it would be a quite interesting
> project.
> 
>> what should i do now
> 
> As I said add a row to the MoM Wiki page (and add Afif as mentor if he
> volunteers to do so).

I'm fine with this.

>  Than please follow the Debian Med policy document
> (linked from the MoM Wiki page) to get an account at alioth.debian.org
> to get commit permissions to Git (or SVN).
> 

This looks done.

Kerim, I would suggest now that you file an intent to package emperor.
See . Andreas
likes to do this after packaging is completed, but I think it helps to
have it early in order to log progress of the packaging, even if it does
not get completed anytime soon.

Once that is up, I can look for old discussion threads regarding
Andreas' previous packaging effort and post them to the log for reference.

regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name