Hi Andreas, I made some changes and will push them soon. Add manpages for scripts, changes in testsuite etc. But when writing manpages, I realize that deepnano uses some files under nets_data/ in default arguments.
in source code: parser.add_argument('--template_net', type=str, default="nets_data/map6temp. npz") parser.add_argument('--complement_net', type=str, default= "nets_data/map6comp.npz") parser.add_argument('--big_net', type=str, default="nets_data/map6-2d- big.npz") these .npz files is python numpy saves. And I think, they use different reads according to this issue[1]. What can we do for this defaults? (Quilt patch?) Are there anything else I can do for this program until we get a response from developer? Regards [1] https://bitbucket.org/vboza/deepnano/issues/4/deepnano- with-metrichor-bad-input-argument 2017-02-15 17:06 GMT+03:00 Andreas Tille <andr...@an3as.eu>: > Hi, > > On Wed, Feb 15, 2017 at 04:36:36PM +0300, Çağrı ULAŞ wrote: > > What exactly did you plan in connection with the poretools package? > > I do not plan anything with poretools. > > > In deepnano at debian/deepnano-data-files/test_data/ , there are 3 gz > files. > > These files are copied from poretools source. Thanks to Afif, > poretools-data > > package is currently present in sid. So we can remove these files from > > deepnano-data and use poretools-data, deepnano-data for testing. > > So do you want to do this in Git? > > > deepnano-data will only contain nets_data/ . > > Sounds good. > > > > I have fixed the deepnano debian/control file a bit (see my last > > > commits) and think a manpage could be written using help2man. > > > > Ok. > > > > > > > How do we want to proceed to finalise the MoM project? > > > > I think, package is usable but still no version tag on it. I'm going to > > create an issue > > on bitbucket. Maybe get a response from there. > > Good. > > Please adapt the test of deepnano to avoid duplicated data files and > write a manpage using help2man. As a hint: I've written a script[1] > which you can put into the debian/ dir replace "<PROGNAME>" (if there > are more binaries you need to copy the according paragraph). Than > install the preliminary package on your local machine and run > > debian/createmanpages > > May be you need to adapt --help-option to fit what the program expects. > > Hope this helps. > > Kind regards > > Andreas. > > > [1] https://anonscm.debian.org/viewvc/debian-med/trunk/helper- > scripts/createmanpages?view=markup > > -- > http://fam-tille.de > -- *Çağrı ULAŞ* about.me/cagriulas