Re: Self Introduction
Please do not reply to me personally, rather reply on the list. See below :- On Fri, Apr 01, 2022 at 01:14:09AM +0530, Vinay wrote: >> Cool. But I do not see this package in the archive. >> Am I misunderstanding something? > The package isn't uploaded to the archive yet. Okay, do you need sponsoring for this? Where are your packaging changes, if you can link up? > > Great, what tasks are you interested in doing? > > If you are not sure, then for newcomer tasks you > > could look into packages needing autopkgtest[1] pick a package > > and add an autopkgtest to it. > Sure will package and if any doubts can i drop the question on the > matrix room or to the mailing list? Mailing list is better for most queries, matrix is good for quick reports/quick queries. Also, please head over to this link[2] and subscribe to the mailing list if you haven't already. Let me know once you are done, so I/others will not have to CC you everytime and you could read the replies from list mail. > I would like to choose the package python-seqcluster , python-seqcluster is in contrib, and I am not sure if debci runs for contrib packages or not. In any case, as first task, please do not work on seqcluster, rather choose a different package which is in main section instead. > i'm new to > autopkgtest any wiki links to refer to get started Sure, you can take a look at the HOWTO here[3] There are plenty of examples, you can for instance refer these[4-8] Do not hesitate to ask if you need more help :) > [1]: > https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/debian-med-tests.txt [2]: https://lists.debian.org/debian-med/ [3]: https://salsa.debian.org/ci-team/autopkgtest/-/blob/master/doc/README.package-tests.rst [4]: https://salsa.debian.org/med-team/shovill/-/tree/master/debian/tests [5]: https://salsa.debian.org/med-team/bustools/-/tree/master/debian/tests [6]: https://salsa.debian.org/med-team/busco/-/tree/master/debian/tests [7]: https://salsa.debian.org/med-team/mafft/-/tree/master/debian/tests [8]: https://salsa.debian.org/med-team/seqkit/-/tree/master/debian/tests Regards, Nilesh signature.asc Description: PGP signature
Re: Self Introduction
On 01/04/22 00:41, Vinay wrote: On 31/03/22 01:32, Nilesh Patra wrote: On Thu, Mar 31, 2022 at 12:43:57AM +0530, Vinay wrote: I am Vinay from India, a student currently pursuing Computer Science Engineering. Hello and welcome. I am from India as well so it is nice to see you on this list. I use GNU/Linux and have been using Debian for 2 years. I have basic packaging skills, recently I started my journey in packaging a node module (https://www.npmjs.com/package/prosemirror-view). Cool. But I do not see this package in the archive. Am I misunderstanding something? The package isn't uploaded to the archive yet. Furthermore, I have little knowledge about biology and medical applications, and also would like to learn about it to get to started. I would like to contribute to Debian. Great, what tasks are you interested in doing? If you are not sure, then for newcomer tasks you could look into packages needing autopkgtest[1] pick a package and add an autopkgtest to it. Sure will package and if any doubts can i drop the question on the matrix room or to the mailing list? [1]: https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/debian-med-tests.txt I would like to choose the package python-seqcluster , i'm new to autopkgtest any wiki links to refer to get started Regards, Nilesh
Re: Self Introduction
On 31/03/22 01:32, Nilesh Patra wrote: On Thu, Mar 31, 2022 at 12:43:57AM +0530, Vinay wrote: I am Vinay from India, a student currently pursuing Computer Science Engineering. Hello and welcome. I am from India as well so it is nice to see you on this list. I use GNU/Linux and have been using Debian for 2 years. I have basic packaging skills, recently I started my journey in packaging a node module (https://www.npmjs.com/package/prosemirror-view). Cool. But I do not see this package in the archive. Am I misunderstanding something? The package isn't uploaded to the archive yet. Furthermore, I have little knowledge about biology and medical applications, and also would like to learn about it to get to started. I would like to contribute to Debian. Great, what tasks are you interested in doing? If you are not sure, then for newcomer tasks you could look into packages needing autopkgtest[1] pick a package and add an autopkgtest to it. Sure will package and if any doubts can i drop the question on the matrix room or to the mailing list? [1]: https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/debian-med-tests.txt Regards, Nilesh
Re: pigx-rnaseq now depends on megadepth
Hello, I just also prepared https://salsa.debian.org/med-team/megadepth Comments and/or upload would be lovely. Many thanks and regards, Steffen On 31.03.22 15:35, Steffen Möller wrote: I was not aware of megadepth - but that is why to pick some experts' workflow system in the first place as a reference. https://salsa.debian.org/r-pkg-team/r-bioc-megadepth needs https://salsa.debian.org/r-pkg-team/r-cran-cmdfun and I am still working on the megadepth binary that is wrapped. So, for the moment this needs to be installed independently. I suggest to nonetheless upload the package already. I would love to see the package(s) reviewed. Many thanks Steffen
pigx-rnaseq now depends on megadepth
I was not aware of megadepth - but that is why to pick some experts' workflow system in the first place as a reference. https://salsa.debian.org/r-pkg-team/r-bioc-megadepth needs https://salsa.debian.org/r-pkg-team/r-cran-cmdfun and I am still working on the megadepth binary that is wrapped. So, for the moment this needs to be installed independently. I suggest to nonetheless upload the package already. I would love to see the package(s) reviewed. Many thanks Steffen
New kissplice version (2.6.0) and packaging changes
Hello, The new version of kissplice (2.6.0) has been published upstream. Due to internal build system and infrastructure changes, the packaging infrastructure requires a few changes. I had initially contacted Andreas Tille to signal that ahead of time ( [ https://alioth-lists.debian.net/pipermail/debian-med-packaging/2022-March/098822.html | https://alioth-lists.debian.net/pipermail/debian-med-packaging/2022-March/098822.html ] ). I've prepared a commit with changes to [ https://salsa.debian.org/med-team/kissplice | https://salsa.debian.org/med-team/kissplice ] which should handle all build-system changes. I have not retrieved the new version from the upstream gitlab, as it seems to rely on automated git scripts I am not familiar with. In his reply, Andreas said to simply push my changes to master, but this seem to require access that I do not yet have. I've sent an access request to DebianMed. Regards, François Gindraud
Re: Self Introduction
Hi, Am Thu, Mar 31, 2022 at 01:32:31AM +0530 schrieb Nilesh Patra: > On Thu, Mar 31, 2022 at 12:43:57AM +0530, Vinay wrote: > > I am Vinay from India, a student currently pursuing Computer Science > > Engineering. > > Hello and welcome. I am from India as well so it is nice to > see you on this list. Welcome also from me from Europe. :-) > > I use GNU/Linux and have been using Debian for 2 years. > > I have basic packaging skills, recently I started my journey in packaging a > > node module (https://www.npmjs.com/package/prosemirror-view). > > Cool. But I do not see this package in the archive. > Am I misunderstanding something? I guess Nilesh means that there is no repository on salsa.debian.org. I guess you have a login there and you want to become a member of med-team to contribute sensibly. > > Furthermore, I have little knowledge about biology and medical applications, > > and also would like to learn about it to get to started. > > I would like to contribute to Debian. > > Great, what tasks are you interested in doing? > If you are not sure, then for newcomer tasks you > could look into packages needing autopkgtest[1] pick a package > and add an autopkgtest to it. The list Nilesh linked to[1] is ordering packages without autopkgtests in the sequence of their usage number by popcon. Please note that the table contains a column which gives a hint about graphical user interface where automated testing is probably quite hard (but might be possible if the software contains some command line interface). Kind regards Andreas. > [1]: > https://salsa.debian.org/med-team/community/helper-scripts/-/blob/master/debian-med-tests.txt -- http://fam-tille.de
