Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
On Sat, Mar 15, 2014 at 10:51:31AM -0700, Diane Trout wrote: That's fine but I personally do not require this for sponsoring. I always fetch the packaging from VCS. Ok. debian/changelog pushed to alioth. Though I still haven't pushed a release tag. Not really - perhaps you forgot the final push? Anyway I have taken the d/changelog file from your mentors commit to build the package. Should you do that, or should I? I'll do after uploading usually. This has been reasonable in the past since I might do some last minute changes before uploading and thus tagging *after* the upload seems to make sense. It depends. Sometimes the lintian issue should remain as a reminder fro potential future fixes. An override is fine if there is really no point that it would be fixed in the future. Ok. So it actually makes sense to leave the no upstream changelog and reminder to use gpg signatures as either of those could be added at any time. And both would be useful to have. Thank you for reviewing and sponsoring. Thanks for your preparation - Package just uploaded (please git pull for latest status) Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140316104124.gd15...@an3as.eu
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
On Sun, Mar 16, 2014 at 11:41:24AM +0100, Andreas Tille wrote: Not really - perhaps you forgot the final push? Anyway I have taken the d/changelog file from your mentors commit to build the package. Sorry, my fault - for some reason I did not got your latest push when I built the package and once I wanted to push I have noticed yours. I guess it does not really matter for the result which should be the same. Sorry for the confusion Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140316104538.ge15...@an3as.eu
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
Hi Diane, On Fri, Mar 14, 2014 at 03:55:42PM -0700, Diane Trout wrote: I have a package built on mentors. (see below for mentors links) That's fine but I personally do not require this for sponsoring. I always fetch the packaging from VCS. I made a few more adjustments to the package, fixing up the copyright file, and adding a build-dependency. I ran lintian on my built package and just have warnings for no gpg signature in the watch file and no upstream changelog. (Should one make lintian overrides for those?) It depends. Sometimes the lintian issue should remain as a reminder fro potential future fixes. An override is fine if there is really no point that it would be fixed in the future. I haven't committed the release changelog to git yet. I'm not quite sure when to push that to make sure the dates and release tags are most correct. Please always push as soon as you have done any relevant stuff. This is the usual way of cooperation in Debian Med team. I'll have a look there and will do the sponsoring accordingly. Thanks for your work on this Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140315083337.gb15...@an3as.eu
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
That's fine but I personally do not require this for sponsoring. I always fetch the packaging from VCS. Ok. debian/changelog pushed to alioth. Though I still haven't pushed a release tag. Should you do that, or should I? It depends. Sometimes the lintian issue should remain as a reminder fro potential future fixes. An override is fine if there is really no point that it would be fixed in the future. Ok. So it actually makes sense to leave the no upstream changelog and reminder to use gpg signatures as either of those could be added at any time. And both would be useful to have. Thank you for reviewing and sponsoring. Diane -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/2644921.nXmgP0SEq3@myrada
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
Hello again, sounds very sensible) this is the right approach. So if you would send an ITP this would be cool. I'm also perfectly fine if you would like to be Uploader of the package if you are interested. I have a package built on mentors. (see below for mentors links) I made a few more adjustments to the package, fixing up the copyright file, and adding a build-dependency. I ran lintian on my built package and just have warnings for no gpg signature in the watch file and no upstream changelog. (Should one make lintian overrides for those?) I haven't committed the release changelog to git yet. I'm not quite sure when to push that to make sure the dates and release tags are most correct. Diane ---mentors links--- Your upload of the package 'libcofoja-java' to mentors.debian.net was successful. Others can now see it. The URL of your package is: http://mentors.debian.net/package/libcofoja-java The respective dsc file can be found at: http://mentors.debian.net/debian/pool/main/libc/libcofoja-java/libcofoja-java_1.1-r150-1.dsc If you do not yet have a sponsor for your package you may want to go to http://mentors.debian.net/sponsors/rfs-howto/libcofoja-java and set the Seeking a sponsor option to highlight your package on the welcome page. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/6908191.y4ZN0LvlUP@myrada
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
I have injected some initial packaging stuff at git://anonscm.debian.org/debian-med/libcofoja-java.git Unfortunately I have not idea what package might provide a proper bootstrap.jar. I think once this is clarified a patch of build.xml to point to the Debian locations of the jars might do the trick. Any volunteer? Kind regards Andreas. I'll start working on it. Diane -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/2403331.nWHeoHGvBi@myrada
Re: Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
On Tuesday, March 11, 2014 13:03:55 Diane Trout wrote: I have injected some initial packaging stuff at git://anonscm.debian.org/debian-med/libcofoja-java.git I built a version that seems to work with igv. I went ahead and pushed two commits to the libcofoja-java.git repository. One change was to alter the patch that was changing the defaults.property file to not build a snapshot build. I then made a few changes to the debian/rules file to help build the bootstrap version of the cofoja library and run some of the tests. To get it to work with igv I've been manually editing /usr/bin/igv and adding /usr/share/java/cofoja.jar to the classpath. If that looks good should I file an ITP for libcofoja? We'll also need to update igv to list libcofoja as a dependency. Diane -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5912265.OyzKCcjj3K@myrada
Any volunteer to finish libcofoja-java (Was: Bug#741052: [igv] Unhandled exception java.lang.NoClassDefFoundError: com/google/java/contract/util/Objects)
On Fri, Mar 07, 2014 at 02:13:29PM -0800, Diane Trout wrote: In a few different cases I gotten a very similar a java stack trace. * I tried to download a new genome using the drop down box. * Hitting the X maximize window decoration * Several things that trigger tool tip popups. As far as I can tell IGV 2.3.14 needs Google Contracts for Java. https://code.google.com/p/cofoja/ (I tried IGV with one of prebuilt jar files from the cofoja project and it behaved much better). cofoja appears to be LGPL-2.1+, so I'm assuming the best solution is to package it for Debian. I have injected some initial packaging stuff at git://anonscm.debian.org/debian-med/libcofoja-java.git Unfortunately I have not idea what package might provide a proper bootstrap.jar. I think once this is clarified a patch of build.xml to point to the Debian locations of the jars might do the trick. Any volunteer? Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140308224618.gf14...@an3as.eu
