[med-svn] [Git][med-team/python-multipletau][pristine-tar] pristine-tar data for python-multipletau_0.3.0+ds.orig.tar.xz

2018-11-01 Thread Alexandre Mestiashvili
Alexandre Mestiashvili pushed to branch pristine-tar at Debian Med / 
python-multipletau


Commits:
d950aad4 by Alexandre Mestiashvili at 2018-11-01T14:08:19Z
pristine-tar data for python-multipletau_0.3.0+ds.orig.tar.xz

- - - - -


2 changed files:

- + python-multipletau_0.3.0+ds.orig.tar.xz.delta
- + python-multipletau_0.3.0+ds.orig.tar.xz.id


Changes:

=
python-multipletau_0.3.0+ds.orig.tar.xz.delta
=
Binary files /dev/null and b/python-multipletau_0.3.0+ds.orig.tar.xz.delta 
differ


=
python-multipletau_0.3.0+ds.orig.tar.xz.id
=
@@ -0,0 +1 @@
+ac2ea72b253e7bd37b595ac18a952e86c25512bf



View it on GitLab: 
https://salsa.debian.org/med-team/python-multipletau/commit/d950aad476724e0d4b9059a79c6281549d595e98

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[med-svn] [Git][med-team/gdpc] Pushed new tag debian/2.2.5-9

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/2.2.5-9 at Debian Med / gdpc

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[med-svn] [Git][med-team/gdpc][master] 5 commits: Homepage seems to have vanished. Set homepage to what was found at 2018-02-12…

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / gdpc


Commits:
f4fc57d8 by Andreas Tille at 2018-11-01T14:28:34Z
Homepage seems to have vanished.  Set homepage to what was found at 2018-02-12 
by web.archive.org; Fake watch file

- - - - -
bf480bf2 by Andreas Tille at 2018-11-01T14:28:56Z
debhelper 11

- - - - -
a1ea7499 by Andreas Tille at 2018-11-01T14:29:11Z
Point Vcs fields to salsa.debian.org

- - - - -
7b8de861 by Andreas Tille at 2018-11-01T14:29:11Z
Standards-Version: 4.2.1

- - - - -
75626566 by Andreas Tille at 2018-11-01T14:44:38Z
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/watch


Changes:

=
debian/changelog
=
@@ -1,3 +1,14 @@
+gdpc (2.2.5-9) unstable; urgency=medium
+
+  * Homepage seems to have vanished.  Set homepage to what was found at
+2018-02-12 by web.archive.org
+  * Fake watch file
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 15:29:12 +0100
+
 gdpc (2.2.5-8) unstable; urgency=medium
 
   * Add missing xauth to debian/tests/control


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -4,12 +4,12 @@ Uploaders: Nelson A. de Oliveira ,
Andreas Tille 
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
libgtk2.0-dev
-Standards-Version: 4.1.2
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/gdpc.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/gdpc.git
-Homepage: http://www.frantz.fi/software/gdpc.php
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/gdpc
+Vcs-Git: https://salsa.debian.org/med-team/gdpc.git
+Homepage: 
https://web.archive.org/web/20180212152753/http://www.frantz.fi/software/gdpc.php
 
 Package: gdpc
 Architecture: any


=
debian/watch
=
@@ -1,2 +1,4 @@
-version=3
-https://www.frantz.fi/index.php?page=software software/gdpc-(.*)\.tar\.gz
+version=4
+
+opts=dversionmangle=s/.*/0.No-Release/ \
+  https://people.debian.org/~eriberto/ 
FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz



View it on GitLab: 
https://salsa.debian.org/med-team/gdpc/compare/425bba1b326c3bea05ac2390330dccb5a0904308...756265665aadd2aa199a879e3c70c5b19bc4e6d8

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/gdpc/compare/425bba1b326c3bea05ac2390330dccb5a0904308...756265665aadd2aa199a879e3c70c5b19bc4e6d8
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[med-svn] [Git][med-team/clonalframeml] Pushed new tag debian/1.11-2

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/1.11-2 at Debian Med / clonalframeml

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[med-svn] [Git][med-team/clonalframeml][master] 4 commits: debhelper 11

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / clonalframeml


Commits:
0992a3ce by Andreas Tille at 2018-11-01T14:20:59Z
debhelper 11

- - - - -
a9ecb20b by Andreas Tille at 2018-11-01T14:21:01Z
Point Vcs fields to salsa.debian.org

- - - - -
4a3f59fd by Andreas Tille at 2018-11-01T14:21:01Z
Standards-Version: 4.2.1

- - - - -
5e85f896 by Andreas Tille at 2018-11-01T14:22:13Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/compat
- debian/control


Changes:

=
debian/changelog
=
@@ -1,3 +1,11 @@
+clonalframeml (1.11-2) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 15:21:01 +0100
+
 clonalframeml (1.11-1) unstable; urgency=medium
 
   * Initial release (Closes: #876356)


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -3,10 +3,10 @@ Maintainer: Debian Med Packaging Team 

 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.0
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/clonalframeml.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/clonalframeml.git
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/clonalframeml
+Vcs-Git: https://salsa.debian.org/med-team/clonalframeml.git
 Homepage: https://github.com/xavierdidelot/ClonalFrameML
 
 Package: clonalframeml



View it on GitLab: 
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-- 
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[med-svn] [Git][med-team/libics][master] 4 commits: debhelper 11

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / libics


Commits:
93a85688 by Andreas Tille at 2018-11-01T14:17:59Z
debhelper 11

- - - - -
ad44f43b by Andreas Tille at 2018-11-01T14:18:21Z
Point Vcs fields to salsa.debian.org

- - - - -
9495bb98 by Andreas Tille at 2018-11-01T14:18:21Z
Standards-Version: 4.2.1

- - - - -
bc13e1fb by Andreas Tille at 2018-11-01T14:19:36Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/compat
- debian/control


Changes:

=
debian/changelog
=
@@ -1,3 +1,11 @@
+libics (1.6.2-2) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 15:18:22 +0100
+
 libics (1.6.2-1) unstable; urgency=medium
 
   * New upstream version


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -3,12 +3,12 @@ Maintainer: Debian Med Packaging Team 

 Section: libs
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
d-shlibs,
zlib1g-dev | libz-dev
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libics.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/libics.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/libics
+Vcs-Git: https://salsa.debian.org/med-team/libics.git
 Homepage: https://svi-opensource.github.io/libics/
 
 Package: libics0



View it on GitLab: 
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-- 
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[med-svn] [Git][med-team/libics] Pushed new tag debian/1.6.2-2

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/1.6.2-2 at Debian Med / libics

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[med-svn] [Git][med-team/librdp-taxonomy-tree-java][master] 4 commits: debhelper 11

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / librdp-taxonomy-tree-java


Commits:
6fc1dd10 by Andreas Tille at 2018-11-01T14:14:44Z
debhelper 11

- - - - -
53168d6f by Andreas Tille at 2018-11-01T14:14:46Z
Point Vcs fields to salsa.debian.org

- - - - -
04222e1a by Andreas Tille at 2018-11-01T14:14:46Z
Standards-Version: 4.2.1

- - - - -
89b44357 by Andreas Tille at 2018-11-01T14:18:17Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/compat
- debian/control


Changes:

=
debian/changelog
=
@@ -1,3 +1,11 @@
+librdp-taxonomy-tree-java (1.2.0-3) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 15:14:46 +0100
+
 librdp-taxonomy-tree-java (1.2.0-2) unstable; urgency=medium
 
   * Moved packaging from SVN to Git


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -4,12 +4,12 @@ Uploaders: Tim Booth ,
Andreas Tille 
 Section: java
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
default-jdk,
javahelper
-Standards-Version: 4.1.1
-Vcs-Browser: 
https://anonscm.debian.org/cgit/debian-med/librdp-taxonomy-tree-java.git
-Vcs-Git: 
https://anonscm.debian.org/git/debian-med/librdp-taxonomy-tree-java.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/librdp-taxonomy-tree-java
+Vcs-Git: https://salsa.debian.org/med-team/librdp-taxonomy-tree-java.git
 Homepage: https://github.com/rdpstaff/TaxonomyTree
 
 Package: librdp-taxonomy-tree-java



View it on GitLab: 
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-- 
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[med-svn] [Git][med-team/librdp-taxonomy-tree-java] Pushed new tag debian/1.2.0-3

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/1.2.0-3 at Debian Med / 
librdp-taxonomy-tree-java

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[med-svn] [Git][med-team/python-cobra][master] 4 commits: Add python3-pytest-benchmark to the autopkg test dependencies

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / python-cobra


Commits:
aeda6d93 by Andreas Tille at 2018-11-01T12:58:20Z
Add python3-pytest-benchmark to the autopkg test dependencies

- - - - -
18e80c1d by Andreas Tille at 2018-11-01T13:00:10Z
Secure URI in copyright format

- - - - -
9e1755a2 by Andreas Tille at 2018-11-01T13:00:10Z
Remove trailing whitespace in debian/changelog

- - - - -
394cb8bd by Andreas Tille at 2018-11-01T13:06:06Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/copyright
- debian/tests/control.autodep8


Changes:

=
debian/changelog
=
@@ -1,7 +1,20 @@
+python-cobra (0.13.4-2) unstable; urgency=medium
+
+  [ Matthias Klose ]
+  * Team upload
+  * Add python3-pytest-benchmark to the autopkg test dependencies.
+Closes: #912574
+
+  [ Andreas Tille ]
+  * Secure URI in copyright format
+  * Remove trailing whitespace in debian/changelog
+
+ -- Andreas Tille   Thu, 01 Nov 2018 14:00:10 +0100
+
 python-cobra (0.13.4-1) unstable; urgency=medium
 
   * Team upload.
-  
+
   [ Afif Elghraoui ]
   * New upstream version
 Closes: #904709


=
debian/copyright
=
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: cobrapy
 Upstream-Contact: Henning Redestig 
 Source: http://github.com/opencobra/cobrapy


=
debian/tests/control.autodep8
=
@@ -5,6 +5,7 @@ Depends:
make,
python3-cobra,
python3-pytest,
+   python3-pytest-benchmark,
python3-jsonschema,
 # See the comment for the corresponding section in the python2 test above.
python3-scipy,



View it on GitLab: 
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-- 
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[med-svn] [Git][med-team/python-cobra] Pushed new tag debian/0.13.4-2

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/0.13.4-2 at Debian Med / python-cobra

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[med-svn] [Git][med-team/fw4spl][master] Upload to unstable

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / fw4spl


Commits:
ea9682a9 by Andreas Tille at 2018-11-01T12:40:05Z
Upload to unstable

- - - - -


1 changed file:

- debian/changelog


Changes:

=
debian/changelog
=
@@ -1,11 +1,11 @@
-fw4spl (17.2.0-1) UNRELEASED; urgency=medium
+fw4spl (17.2.0-1) unstable; urgency=medium
 
   * Team upload.
   * New upstream version
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.2.1
 
- -- Andreas Tille   Sun, 28 Oct 2018 11:36:07 +0100
+ -- Andreas Tille   Thu, 01 Nov 2018 12:42:50 +0100
 
 fw4spl (14.0.0-1) unstable; urgency=medium
 



View it on GitLab: 
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[med-svn] [Git][med-team/fw4spl] Pushed new tag debian/17.2.0-1

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/17.2.0-1 at Debian Med / fw4spl

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[med-svn] [Git][med-team/aghermann] Pushed new tag upstream/1.1.2

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag upstream/1.1.2 at Debian Med / aghermann

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[med-svn] [Git][med-team/aghermann][upstream] New upstream version 1.1.2

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch upstream at Debian Med / aghermann


Commits:
b8ee3a80 by Andreas Tille at 2018-11-01T10:34:56Z
New upstream version 1.1.2
- - - - -


5 changed files:

- − Makefile.in
- − aclocal.m4
- − autogen.sh
- − compile
- − config.guess


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/aghermann/commit/b8ee3a801e77bb8b9dff2a078986538367c59e66

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[med-svn] [Git][med-team/aghermann][pristine-tar] pristine-tar data for aghermann_1.1.2.orig.tar.xz

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch pristine-tar at Debian Med / aghermann


Commits:
8d58d7ca by Andreas Tille at 2018-11-01T10:34:58Z
pristine-tar data for aghermann_1.1.2.orig.tar.xz

- - - - -


2 changed files:

- aghermann_1.1.2.orig.tar.xz.delta
- aghermann_1.1.2.orig.tar.xz.id


Changes:

=
aghermann_1.1.2.orig.tar.xz.delta
=
Binary files a/aghermann_1.1.2.orig.tar.xz.delta and 
b/aghermann_1.1.2.orig.tar.xz.delta differ


=
aghermann_1.1.2.orig.tar.xz.id
=
@@ -1 +1 @@
-6e839d80d6b00c336ae9ee8820a2fb2e046ad7a9
+940d81768030ba35b718d45b702b6e123a64fab5



View it on GitLab: 
https://salsa.debian.org/med-team/aghermann/commit/8d58d7cac9447e30f20768f7baad2815b5a172f2

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[med-svn] [Git][med-team/aghermann][master] 3 commits: There were uncommited changes in Git - thus injecting changes in changelog of previous upload

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / aghermann


Commits:
378de9c9 by Andreas Tille at 2018-11-01T10:31:29Z
There were uncommited changes in Git - thus injecting changes in changelog of 
previous upload

- - - - -
b8ee3a80 by Andreas Tille at 2018-11-01T10:34:56Z
New upstream version 1.1.2
- - - - -
1d033236 by Andreas Tille at 2018-11-01T10:34:58Z
Update upstream source from tag upstream/1.1.2

Update to upstream version 1.1.2
with Debian dir 8dea6d17f245da37b8dbdc5e77414e1955998e5f
- - - - -


5 changed files:

- − Makefile.in
- − aclocal.m4
- − autogen.sh
- − compile
- − config.guess


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/aghermann/compare/c4a4a2cbcf2a800cad23a13e36339e84ed797d02...1d033236fa2e7563f4a3cdb0bcce5ea7cd443146

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https://salsa.debian.org/med-team/aghermann/compare/c4a4a2cbcf2a800cad23a13e36339e84ed797d02...1d033236fa2e7563f4a3cdb0bcce5ea7cd443146
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[med-svn] [Git][med-team/aghermann] Deleted tag upstream/1.1.2

2018-11-01 Thread Andreas Tille
Andreas Tille deleted tag upstream/1.1.2 at Debian Med / aghermann

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[med-svn] [Git][med-team/aghermann] Deleted tag debian/1.1.2-1

2018-11-01 Thread Andreas Tille
Andreas Tille deleted tag debian/1.1.2-1 at Debian Med / aghermann

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[med-svn] [Git][med-team/volpack][master] 3 commits: Point Vcs fields to salsa.debian.org

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / volpack


Commits:
1515008d by Andreas Tille at 2018-11-01T08:07:16Z
Point Vcs fields to salsa.debian.org

- - - - -
0a9fafdb by Andreas Tille at 2018-11-01T08:07:16Z
Standards-Version: 4.2.1

- - - - -
f77f4601 by Andreas Tille at 2018-11-01T08:36:18Z
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=
debian/changelog
=
@@ -1,12 +1,16 @@
-volpack (1.0b3-7) UNRELEASED; urgency=medium
+volpack (1.0b3-7) unstable; urgency=medium
 
-  * Team upload.
+  [ Dylan Aïssi ]
   * Add grap to libvolpack1-dev Depends (LP:486379).
   * Remove trailing whitespaces in d/control.
   * Standards-Version: 4.1.3.
   * Debhelper 11.
 
- -- Dylan Aïssi   Sun, 21 Jan 2018 15:50:42 +0100
+  [ Andreas Tille ]
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 09:07:16 +0100
 
 volpack (1.0b3-6) unstable; urgency=medium
 


=
debian/control
=
@@ -7,9 +7,9 @@ Priority: optional
 Build-Depends: debhelper (>= 11),
m4,
d-shlibs
-Standards-Version: 4.1.3
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/volpack.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/volpack.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/volpack
+Vcs-Git: https://salsa.debian.org/med-team/volpack.git
 Homepage: http://graphics.stanford.edu/software/volpack/
 
 Package: libvolpack1



View it on GitLab: 
https://salsa.debian.org/med-team/volpack/compare/4117416ada3ad9b87e98f067e2a4873cf0527561...f77f46015ac0a4eb27be2908c33b07bf5882499d

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View it on GitLab: 
https://salsa.debian.org/med-team/volpack/compare/4117416ada3ad9b87e98f067e2a4873cf0527561...f77f46015ac0a4eb27be2908c33b07bf5882499d
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[med-svn] [Git][med-team/pcalendar][master] 5 commits: debhelper 11

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / pcalendar


Commits:
0c9ce800 by Andreas Tille at 2018-11-01T08:06:23Z
debhelper 11

- - - - -
55b3c5cf by Andreas Tille at 2018-11-01T08:06:25Z
Point Vcs fields to salsa.debian.org

- - - - -
6c4b81f4 by Andreas Tille at 2018-11-01T08:06:25Z
Standards-Version: 4.2.1

- - - - -
3909 by Andreas Tille at 2018-11-01T08:35:28Z
Remove compression settings from debian/source/options

- - - - -
cf2447da by Andreas Tille at 2018-11-01T08:39:58Z
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/source/options


Changes:

=
debian/changelog
=
@@ -1,3 +1,12 @@
+pcalendar (3.4.1-3) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Remove compression settings from debian/source/options
+
+ -- Andreas Tille   Thu, 01 Nov 2018 09:35:38 +0100
+
 pcalendar (3.4.1-2) unstable; urgency=medium
 
   * Moved packaging from SVN to Git


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -4,16 +4,16 @@ Uploaders: Miriam Ruiz ,
Andreas Tille 
 Section: utils
 Priority: optional
-Build-Depends: debhelper (>= 10),
+Build-Depends: debhelper (>= 11~),
dh-buildinfo,
default-jdk,
javahelper,
ant,
junit4,
libxerces2-java
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pcalendar.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/pcalendar.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/pcalendar
+Vcs-Git: https://salsa.debian.org/med-team/pcalendar.git
 Homepage: http://linuxorg.sourceforge.net/
 
 Package: pcalendar


=
debian/source/options
=
@@ -1,5 +1,2 @@
-# Bzip2 compression for debian.tar
-compression = "bzip2"
-compression-level = 7
 # Do not generate diff for changes in config.(sub|guess)
 extend-diff-ignore = "(^|/)config.(sub|guess)$"



View it on GitLab: 
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[med-svn] [Git][med-team/pcalendar] Pushed new tag debian/3.4.1-3

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/3.4.1-3 at Debian Med / pcalendar

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[med-svn] [Git][med-team/canu][upstream] New upstream version 1.8+dfsg

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch upstream at Debian Med / canu


Commits:
3557203b by Andreas Tille at 2018-11-01T07:39:45Z
New upstream version 1.8+dfsg
- - - - -


30 changed files:

- addCopyrights-BuildData.pl
- addCopyrights.dat
- addCopyrights.pl
- buildRelease.sh
- + documentation/source/canu-pipeline-17.svg
- + documentation/source/canu-pipeline-20.svg
- documentation/source/commands/bogart.rst
- documentation/source/commands/canu.rst
- documentation/source/commands/overlapInCore.rst
- documentation/source/commands/splitReads.rst
- documentation/source/conf.py
- documentation/source/faq.rst
- documentation/source/history.rst
- documentation/source/index.rst
- documentation/source/parameter-reference.rst
- documentation/source/quick-start.rst
- documentation/source/tutorial.rst
- − src/AS_UTL/AS_UTL_decodeRange.C
- − src/AS_UTL/AS_UTL_decodeRange.H
- − src/AS_UTL/AS_UTL_fasta.C
- − src/AS_UTL/AS_UTL_reverseComplement.C
- − src/AS_UTL/bitEncodings.C
- − src/AS_UTL/bitEncodings.H
- − src/AS_UTL/bitOperations.H
- − src/AS_UTL/bitPackedArray.C
- − src/AS_UTL/bitPackedArray.H
- − src/AS_UTL/bitPackedFile.C
- − src/AS_UTL/bitPackedFile.H
- − src/AS_UTL/bitPacking.H
- − src/AS_UTL/decodeBooleanString.C


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/canu/commit/3557203beb921c94044472b8066b2e2503c53e41

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[med-svn] [Git][med-team/canu][master] 8 commits: New upstream version 1.8+dfsg

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / canu


Commits:
3557203b by Andreas Tille at 2018-11-01T07:39:45Z
New upstream version 1.8+dfsg
- - - - -
2d2b0f7f by Andreas Tille at 2018-11-01T07:39:52Z
Update upstream source from tag upstream/1.8+dfsg

Update to upstream version 1.8+dfsg
with Debian dir 6698b0548a640a64423d4cf680d5cce4de247980
- - - - -
955ee151 by Andreas Tille at 2018-11-01T07:39:52Z
New upstream version

- - - - -
fb7c44fc by Andreas Tille at 2018-11-01T07:39:55Z
Standards-Version: 4.2.1

- - - - -
a1a69c88 by Andreas Tille at 2018-11-01T07:43:58Z
Adapt patches

- - - - -
1e914040 by Andreas Tille at 2018-11-01T07:54:40Z
Remove unused paragraphs in d/copyright

- - - - -
2c3ca72b by Andreas Tille at 2018-11-01T07:56:10Z
Fix perl interpreter path

- - - - -
2a7ce1b0 by Andreas Tille at 2018-11-01T08:02:04Z
Upload to unstable

- - - - -


30 changed files:

- addCopyrights-BuildData.pl
- addCopyrights.dat
- addCopyrights.pl
- buildRelease.sh
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/external-mhap.patch
- − debian/patches/gcc-7_format-security.patch
- debian/patches/series
- debian/patches/use-debian-mhap-at-runtime.patch
- debian/rules
- + documentation/source/canu-pipeline-17.svg
- + documentation/source/canu-pipeline-20.svg
- documentation/source/commands/bogart.rst
- documentation/source/commands/canu.rst
- documentation/source/commands/overlapInCore.rst
- documentation/source/commands/splitReads.rst
- documentation/source/conf.py
- documentation/source/faq.rst
- documentation/source/history.rst
- documentation/source/index.rst
- documentation/source/parameter-reference.rst
- documentation/source/quick-start.rst
- documentation/source/tutorial.rst
- − src/AS_UTL/AS_UTL_decodeRange.C
- − src/AS_UTL/AS_UTL_decodeRange.H
- − src/AS_UTL/AS_UTL_fasta.C
- − src/AS_UTL/AS_UTL_reverseComplement.C
- − src/AS_UTL/bitEncodings.C


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/canu/compare/b0bd43c00403591d5484a22a0d23e960204e8fad...2a7ce1b0073b465dbf14e3b40626209efe25dde8

-- 
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[med-svn] [Git][med-team/canu] Pushed new tag upstream/1.8+dfsg

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag upstream/1.8+dfsg at Debian Med / canu

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[med-svn] [Git][med-team/canu] Pushed new tag debian/1.8+dfsg-1

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/1.8+dfsg-1 at Debian Med / canu

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[med-svn] [Git][med-team/canu][pristine-tar] pristine-tar data for canu_1.8+dfsg.orig.tar.gz

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch pristine-tar at Debian Med / canu


Commits:
c2ed8486 by Andreas Tille at 2018-11-01T07:39:52Z
pristine-tar data for canu_1.8+dfsg.orig.tar.gz

- - - - -


2 changed files:

- + canu_1.8+dfsg.orig.tar.gz.delta
- + canu_1.8+dfsg.orig.tar.gz.id


Changes:

=
canu_1.8+dfsg.orig.tar.gz.delta
=
Binary files /dev/null and b/canu_1.8+dfsg.orig.tar.gz.delta differ


=
canu_1.8+dfsg.orig.tar.gz.id
=
@@ -0,0 +1 @@
+e2335a8e15199518dcb9580f54c85dedb8e09f95



View it on GitLab: 
https://salsa.debian.org/med-team/canu/commit/c2ed8486dd847dab14f52a2a271bbe2a8538af54

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[med-svn] [Git][med-team/mssstest] Pushed new tag debian/3.0-7

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/3.0-7 at Debian Med / mssstest

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[med-svn] [Git][med-team/mssstest][master] 6 commits: Add fake watch file

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / mssstest


Commits:
5323aaed by Andreas Tille at 2018-11-01T07:37:57Z
Add fake watch file

- - - - -
c3e7a9c8 by Andreas Tille at 2018-11-01T07:38:10Z
debhelper 11

- - - - -
fff08e42 by Andreas Tille at 2018-11-01T07:38:12Z
Point Vcs fields to salsa.debian.org

- - - - -
ecfc4de5 by Andreas Tille at 2018-11-01T07:38:12Z
Standards-Version: 4.2.1

- - - - -
a2512ff1 by Andreas Tille at 2018-11-01T07:46:42Z
Spelling

- - - - -
ed53f173 by Andreas Tille at 2018-11-01T07:49:21Z
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/compat
- debian/control
- debian/patches/10_fixdatapath.patch
- + debian/watch


Changes:

=
debian/changelog
=
@@ -1,3 +1,12 @@
+mssstest (3.0-7) unstable; urgency=medium
+
+  * Add fake watch file
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 08:46:52 +0100
+
 mssstest (3.0-6) unstable; urgency=medium
 
   * Moved packaging from SVN to Git


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -5,10 +5,10 @@ Uploaders: Steffen Moeller ,
 Section: non-free/science
 XS-Autobuild: yes
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.1
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/mssstest.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/mssstest.git
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/mssstest
+Vcs-Git: https://salsa.debian.org/med-team/mssstest.git
 Homepage: https://www-gene.cimr.cam.ac.uk/MSgenetics/GAMES/MSSS/index.html
 
 Package: mssstest


=
debian/patches/10_fixdatapath.patch
=
@@ -1,4 +1,4 @@
-Description: Use explicite path /usr/share/mssstest to the data files instead
+Description: Use explicit path /usr/share/mssstest to the data files instead
 requiring the user to have these files in the local directory.
 Author: Andreas Tille 
 Last-Update: Sun, 20 Jul 2008 21:51:26 +0200


=
debian/watch
=
@@ -0,0 +1,4 @@
+version=4
+
+opts=dversionmangle=s/.*/0.No-Release/ \
+  https://people.debian.org/~eriberto/ 
FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz



View it on GitLab: 
https://salsa.debian.org/med-team/mssstest/compare/d41c6aa60bd72a1dafdc9a03980fd3eee455fead...ed53f173cf541e76d4aa2a232fa2937f68d8cfc8

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[med-svn] [Git][med-team/libbio-mage-utils-perl][master] 4 commits: debhelper 11

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / libbio-mage-utils-perl


Commits:
f331e15c by Andreas Tille at 2018-11-01T07:26:01Z
debhelper 11

- - - - -
a158e810 by Andreas Tille at 2018-11-01T07:26:04Z
Point Vcs fields to salsa.debian.org

- - - - -
2d429ea4 by Andreas Tille at 2018-11-01T07:26:04Z
Standards-Version: 4.2.1

- - - - -
f571ca09 by Andreas Tille at 2018-11-01T07:27:00Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/compat
- debian/control


Changes:

=
debian/changelog
=
@@ -1,3 +1,11 @@
+libbio-mage-utils-perl (20030502.0-4) unstable; urgency=medium
+
+  * debhelper 11
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+
+ -- Andreas Tille   Thu, 01 Nov 2018 08:26:05 +0100
+
 libbio-mage-utils-perl (20030502.0-3) unstable; urgency=medium
 
   * Moved packaging from SVN to Git


=
debian/compat
=
@@ -1 +1 @@
-10
+11


=
debian/control
=
@@ -4,10 +4,10 @@ Uploaders: Charles Plessy ,
Andreas Tille 
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
-Standards-Version: 4.1.1
-Vcs-Browser: 
https://anonscm.debian.org/cgit/debian-med/libbio-mage-utils-perl.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/libbio-mage-utils-perl.git
+Build-Depends: debhelper (>= 11~)
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/libbio-mage-utils-perl
+Vcs-Git: https://salsa.debian.org/med-team/libbio-mage-utils-perl.git
 Homepage: http://mged.sourceforge.net/
 
 Package: libbio-mage-utils-perl



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[med-svn] [Git][med-team/libbio-mage-utils-perl] Pushed new tag debian/20030502.0-4

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/20030502.0-4 at Debian Med / 
libbio-mage-utils-perl

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[med-svn] [Git][med-team/raster3d] Pushed new tag debian/3.0-3-5

2018-11-01 Thread Andreas Tille
Andreas Tille pushed new tag debian/3.0-3-5 at Debian Med / raster3d

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[med-svn] [Git][med-team/raster3d][master] 5 commits: Add autopkgtest

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / raster3d


Commits:
589bfd4b by Zebulon McCorkle at 2018-11-01T06:24:15Z
Add autopkgtest

- - - - -
23fc308a by Andreas Tille at 2018-11-01T06:24:42Z
Add changelog entry for autopkgtest

- - - - -
929a1440 by Andreas Tille at 2018-11-01T06:48:33Z
Use the usual run-unit-test to let the test also serve as example for the user

- - - - -
64e17986 by Andreas Tille at 2018-11-01T06:49:23Z
Secure URI in copyright format

- - - - -
64c4622f by Andreas Tille at 2018-11-01T06:53:02Z
Upload to unstable

- - - - -


6 changed files:

- + debian/README.test
- debian/changelog
- debian/copyright
- debian/raster3d.docs
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=
debian/README.test
=
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+
+
+This package can be tested by running the provided test:
+
+sh run-unit-test
+
+in order to confirm its integrity.  You need to install raster3d-doc
+as well since it contains the data set needed for the test.


=
debian/changelog
=
@@ -1,3 +1,14 @@
+raster3d (3.0-3-5) unstable; urgency=medium
+
+  [ Piper McCorkle ]
+  * Add autopkgtest
+Closes: #909709
+
+  [ Andreas Tille ]
+  * Secure URI in copyright format
+
+ -- Andreas Tille   Thu, 01 Nov 2018 07:49:23 +0100
+
 raster3d (3.0-3-4) unstable; urgency=medium
 
   * debhelper 11


=
debian/copyright
=
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Raster3D
 Upstream-Contact: Ethan Merritt 
 Source: http://skuld.bmsc.washington.edu/raster3d/raster3d.html


=
debian/raster3d.docs
=
@@ -1 +1,2 @@
 BUGS
+debian/tests/run-unit-test


=
debian/tests/control
=
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=
debian/tests/run-unit-test
=
@@ -0,0 +1,13 @@
+#!/bin/sh
+set -e
+
+pkg=raster3d
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XX`
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cd $AUTOPKGTEST_TMP
+
+rings3d -sugars < /usr/share/doc/raster3d/examples/sugars.pdb



View it on GitLab: 
https://salsa.debian.org/med-team/raster3d/compare/6bb02de5dabde33d79024093f79a55526cdd434b...64c4622f33dafd4a8fe2b5fc790b04733ad17d11

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[med-svn] [Git][med-team/plink1-9][master] Upload to unstable

2018-11-01 Thread Dylan Aïssi
Dylan Aïssi pushed to branch master at Debian Med / plink1.9


Commits:
754145b9 by Dylan Aïssi at 2018-11-01T06:38:39Z
Upload to unstable

- - - - -


1 changed file:

- debian/changelog


Changes:

=
debian/changelog
=
@@ -1,9 +1,9 @@
-plink1.9 (1.90~b6.6-181012-1) UNRELEASED; urgency=medium
+plink1.9 (1.90~b6.6-181012-1) unstable; urgency=medium
 
   * New upstream release.
   * Update my email address.
 
- -- Dylan Aïssi   Thu, 01 Nov 2018 07:30:31 +0100
+ -- Dylan Aïssi   Thu, 01 Nov 2018 07:38:21 +0100
 
 plink1.9 (1.90~b6.5-180913-1) unstable; urgency=medium
 



View it on GitLab: 
https://salsa.debian.org/med-team/plink1-9/commit/754145b949368ee6216e602427e6958a4e64577b

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[med-svn] [Git][med-team/plink1-9][pristine-tar] pristine-tar data for plink1.9_1.90~b6.6-181012.orig.tar.xz

2018-11-01 Thread Dylan Aïssi
Dylan Aïssi pushed to branch pristine-tar at Debian Med / plink1.9


Commits:
4e2518ed by Dylan Aïssi at 2018-11-01T06:30:17Z
pristine-tar data for plink1.9_1.90~b6.6-181012.orig.tar.xz

- - - - -


2 changed files:

- + plink1.9_1.90~b6.6-181012.orig.tar.xz.delta
- + plink1.9_1.90~b6.6-181012.orig.tar.xz.id


Changes:

=
plink1.9_1.90~b6.6-181012.orig.tar.xz.delta
=
Binary files /dev/null and b/plink1.9_1.90~b6.6-181012.orig.tar.xz.delta differ


=
plink1.9_1.90~b6.6-181012.orig.tar.xz.id
=
@@ -0,0 +1 @@
+84aa1fa5b00feb7d3ce66bc89ea503cbe5caa3c5



View it on GitLab: 
https://salsa.debian.org/med-team/plink1-9/commit/4e2518ed9b3ab13049275a2e05e037b419086772

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[med-svn] [Git][med-team/plink1-9] Pushed new tag upstream/1.90_b6.6-181012

2018-11-01 Thread Dylan Aïssi
Dylan Aïssi pushed new tag upstream/1.90_b6.6-181012 at Debian Med / plink1.9

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[med-svn] [Git][med-team/biojava-live][master] 6 commits: Temporary let watch file scan for 1.7 series to enable easy running of…

2018-11-01 Thread Andreas Tille
Andreas Tille pushed to branch master at Debian Med / biojava-live


Commits:
204b4c1a by Andreas Tille at 2018-11-01T06:09:10Z
Temporary let watch file scan for 1.7 series to enable easy running of 
routine-update.  Currently it is not planed to upgrade that package.

- - - - -
b43861bc by Andreas Tille at 2018-11-01T06:10:52Z
Point Vcs fields to salsa.debian.org

- - - - -
38836e74 by Andreas Tille at 2018-11-01T06:10:53Z
Standards-Version: 4.2.1

- - - - -
5b7b2bae by Andreas Tille at 2018-11-01T06:10:53Z
Remove trailing whitespace in debian/changelog

- - - - -
55c68cf7 by Andreas Tille at 2018-11-01T06:10:53Z
Remove trailing whitespace in debian/rules

- - - - -
ef131f7d by Andreas Tille at 2018-11-01T06:17:21Z
Restore old watch rules (and cleanup watch file from outdated comments

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/rules
- debian/watch


Changes:

=
debian/changelog
=
@@ -1,3 +1,12 @@
+biojava-live (1:1.7.1-8) UNRELEASED; urgency=medium
+
+  * Point Vcs fields to salsa.debian.org
+  * Standards-Version: 4.2.1
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/rules
+
+ -- Andreas Tille   Thu, 01 Nov 2018 07:10:52 +0100
+
 biojava-live (1:1.7.1-7) unstable; urgency=medium
 
   * Remove leftover of debhelper migration from d/rules
@@ -23,7 +32,7 @@ biojava-live (1:1.7.1-6) unstable; urgency=medium
 
 biojava-live (1:1.7.1-5) unstable; urgency=medium
 
-  * d/control: use libcommons-collections3 instead of 
+  * d/control: use libcommons-collections3 instead of
 libcommons-collection in runtime deps (Closes: #748473).
 
  -- Olivier Sallou   Tue, 20 May 2014 15:03:23 +0200
@@ -42,7 +51,7 @@ biojava-live (1:1.7.1-4) unstable; urgency=low
 
 biojava-live (1:1.7.1-3) unstable; urgency=low
 
-  * Use libcommons-collections3-java instead of libcommons-collections-java 
+  * Use libcommons-collections3-java instead of libcommons-collections-java
 
  -- Olivier Sallou   Tue, 10 Sep 2013 09:39:36 +0200
 


=
debian/control
=
@@ -15,9 +15,9 @@ Build-Depends-Indep: libcommons-dbcp-java,
  default-jdk,
  junit4,
  ant-optional
-Standards-Version: 4.1.3
-Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/biojava-live.git
-Vcs-Git: https://anonscm.debian.org/git/debian-med/biojava-live.git
+Standards-Version: 4.2.1
+Vcs-Browser: https://salsa.debian.org/med-team/biojava-live
+Vcs-Git: https://salsa.debian.org/med-team/biojava-live.git
 Homepage: http://www.biojava.org
 
 Package: libbiojava1.7-java


=
debian/rules
=
@@ -17,7 +17,7 @@ SOVERSION=$(shell echo $(DEB_VERSION_UPSTREAM) | cut -f1,2 
-d. )
dh $@
 
 override_dh_auto_build:
-   find . -name "*.java" -o -name ReadMe -o -name "*.fa" -o -name "*.html" 
| xargs -r chmod 644 
+   find . -name "*.java" -o -name ReadMe -o -name "*.fa" -o -name "*.html" 
| xargs -r chmod 644
# circumvent Debian's difficulties with libjgrapht - deleting all usage 
of that library
rm -rf src/org/biojavax/bio/phylo/io/nexus/ \
   src/org/biojavax/bio/phylo/DistanceBasedTreeMethod.java \
@@ -33,7 +33,7 @@ override_dh_auto_build:
 
 override_dh_clean:
ant clean # most probably this is not needed when using dh - leave it 
to be sure ...
-   dh_clean 
+   dh_clean
 
 override_dh_install:
dh_install


=
debian/watch
=
@@ -1,8 +1,4 @@
-version=3
-#http://biojava.org/wiki/BioJava:Download 
http://biojava.org/download/bj.*/biojava-([0-9.]+)-all\.tar\.gz
-
-#http://biojava.org/wiki/BioJava:Download 
http://biojava.org/wiki/BioJava:Download_(1\.[0-9.]+)
-#http://biojava.org/wiki/BioJava:Download_(1\.[0-9.]+)
+version=4
 
 
opts=filenamemangle=s/.+\/biojava-legacy-(\d\S*)\.tar\.gz/biojava-legacy-$1\.tar\.gz/
 \
   https://github.com/biojava/biojava-legacy/tags 
.*/biojava-legacy-(\d\S*)\.tar\.gz



View it on GitLab: 
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