Re: New version of statsmodels is out possibly fixing important bug - any volunteer
Hi Andreas, > Currently the package in Git does not build due to #921779. I admit I > have no idea why #917754 occures but my comparison with python-cycler > (which is able to find the module named > 'matplotlib.sphinxext.only_directives') Gave me some hope that switching > back from python3-sphinx to python-sphinx will solve this. matplotlib.sphinxext.only_directives was removed from matplotlib but you should be fairly easily able to fix up the documentation build, for example: https://sources.debian.org/src/python-periodictable/sid/debian/patches/sphinx-only-directive.patch/ cheers Stuart -- Stuart Prescotthttp://www.nanonanonano.net/ stu...@nanonanonano.net Debian Developer http://www.debian.org/ stu...@debian.org GPG fingerprint90E2 D2C1 AD14 6A1B 7EBB 891D BBC1 7EBB 1396 F2F7
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
Hi, On Sun, Oct 28, 2018 at 07:32:43PM +0100, Andreas Tille wrote: > Hi Julian, > > On Sat, Oct 27, 2018 at 06:05:39PM +0200, Julian Taylor wrote: > > I have pushed an update to git that fixes the build for me and filed > > https://github.com/statsmodels/statsmodels/pull/5348 for the problem. > > I've uploaded statsmodels 0.9.0-1 to experimental. No idea whether we > might need a formal transition or whether we simply should upload to > unstable and "see what happens with dependencies". I'd welcome if > maintaniers with rdepends would give it a try and decide what might be > the best strategy. Unfortunately this issue went totally out of my focus and others obviously did not mind as well. Currently the package in Git does not build due to #921779. I admit I have no idea why #917754 occures but my comparison with python-cycler (which is able to find the module named 'matplotlib.sphinxext.only_directives') Gave me some hope that switching back from python3-sphinx to python-sphinx will solve this. Regarding bug #882641 I think droping the two tests containing the strings statsmodels/datasets/tests/test_utils.py:fn = "raw.github.com,vincentarelbundock,Rdatasets,master,csv,HistData,Guerry.csv.zip" statsmodels/datasets/tests/test_utils.py:fn = "raw.github.com,vincentarelbundock,Rdatasets,master,doc,HistData,rst,Guerry.rst.zip" should do the trick. Any help to fix this is really welcome. Kind regards Andreas. -- http://fam-tille.de
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
Hi Julian, On Sat, Oct 27, 2018 at 06:05:39PM +0200, Julian Taylor wrote: > I have pushed an update to git that fixes the build for me and filed > https://github.com/statsmodels/statsmodels/pull/5348 for the problem. I've uploaded statsmodels 0.9.0-1 to experimental. No idea whether we might need a formal transition or whether we simply should upload to unstable and "see what happens with dependencies". I'd welcome if maintaniers with rdepends would give it a try and decide what might be the best strategy. Kind regards Andreas. -- http://fam-tille.de
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
On 10/26/18 11:33 PM, Andreas Tille wrote: > Hi Yaroslav, > > On Fri, Oct 26, 2018 at 08:59:57AM -0400, Yaroslav Halchenko wrote: >> >>> I guess this went out of your focus. I tried my best to update Git[1] to >>> version 0.9.0. The package build process stumbles about doc creation: >> >> THANKS! > > You (and all other Uploaders) are welcome. > >>> #../tools/examples_rst.py >>> ../tools/fold_toc.py build/html/index.html >>> Traceback (most recent call last): >>> File "../tools/fold_toc.py", line 12, in >>> doc = open(filename, encoding='utf8').read() >> >> so the script now is python3. adjust shebang? > > Only adjusting shebang is not sufficient. The file tools/fold_toc.py > is definitely Python2. I tried: > > $ 2to3 -w fold_toc.py > RefactoringTool: Skipping optional fixer: buffer > RefactoringTool: Skipping optional fixer: idioms > RefactoringTool: Skipping optional fixer: set_literal > RefactoringTool: Skipping optional fixer: ws_comma > RefactoringTool: No changes to fold_toc.py > RefactoringTool: Files that need to be modified: > RefactoringTool: fold_toc.py > > > But for whatever reason it is not changed automatically. Am I missing > something? > > >> alternative might work to patch it with smth like >> >> from io import open > > I have not tried this yet. > > Any further hint (preferably somebody else taking over)? > > Kind regards > > Andreas. > I have pushed an update to git that fixes the build for me and filed https://github.com/statsmodels/statsmodels/pull/5348 for the problem.
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
On 10/26/18 11:33 PM, Andreas Tille wrote: > Hi Yaroslav, > > On Fri, Oct 26, 2018 at 08:59:57AM -0400, Yaroslav Halchenko wrote: >> >>> I guess this went out of your focus. I tried my best to update Git[1] to >>> version 0.9.0. The package build process stumbles about doc creation: >> >> THANKS! > > You (and all other Uploaders) are welcome. > >>> #../tools/examples_rst.py >>> ../tools/fold_toc.py build/html/index.html >>> Traceback (most recent call last): >>> File "../tools/fold_toc.py", line 12, in >>> doc = open(filename, encoding='utf8').read() >> >> so the script now is python3. adjust shebang? > > Only adjusting shebang is not sufficient. The file tools/fold_toc.py > is definitely Python2. I tried: > > $ 2to3 -w fold_toc.py > RefactoringTool: Skipping optional fixer: buffer > RefactoringTool: Skipping optional fixer: idioms > RefactoringTool: Skipping optional fixer: set_literal > RefactoringTool: Skipping optional fixer: ws_comma > RefactoringTool: No changes to fold_toc.py > RefactoringTool: Files that need to be modified: > RefactoringTool: fold_toc.py > > > But for whatever reason it is not changed automatically. Am I missing > something? > > >> alternative might work to patch it with smth like >> >> from io import open > > I have not tried this yet. > > Any further hint (preferably somebody else taking over)? > > Kind regards > > Andreas. > I'll have a look at the issue now.
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
Hi Yaroslav, On Fri, Oct 26, 2018 at 08:59:57AM -0400, Yaroslav Halchenko wrote: > > > I guess this went out of your focus. I tried my best to update Git[1] to > > version 0.9.0. The package build process stumbles about doc creation: > > THANKS! You (and all other Uploaders) are welcome. > > #../tools/examples_rst.py > > ../tools/fold_toc.py build/html/index.html > > Traceback (most recent call last): > > File "../tools/fold_toc.py", line 12, in > > doc = open(filename, encoding='utf8').read() > > so the script now is python3. adjust shebang? Only adjusting shebang is not sufficient. The file tools/fold_toc.py is definitely Python2. I tried: $ 2to3 -w fold_toc.py RefactoringTool: Skipping optional fixer: buffer RefactoringTool: Skipping optional fixer: idioms RefactoringTool: Skipping optional fixer: set_literal RefactoringTool: Skipping optional fixer: ws_comma RefactoringTool: No changes to fold_toc.py RefactoringTool: Files that need to be modified: RefactoringTool: fold_toc.py But for whatever reason it is not changed automatically. Am I missing something? > alternative might work to patch it with smth like > > from io import open I have not tried this yet. Any further hint (preferably somebody else taking over)? Kind regards Andreas. -- http://fam-tille.de
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
On Fri, 26 Oct 2018, Andreas Tille wrote: > Hi Yarislav, > On Sun, Aug 12, 2018 at 02:40:28PM -0400, Yaroslav Halchenko wrote: > > Fwiw I will look into updating soon unless someone beats me to it > I guess this went out of your focus. I tried my best to update Git[1] to > version 0.9.0. The package build process stumbles about doc creation: THANKS! > ... > copying images... [ 97%] savefig/var_fevd.png > copying images... [100%] savefig/dvar_forecast.png > copying static files... done > copying extra files... done > dumping search index in English (code: en) ... done > dumping object inventory... done > build succeeded, 33 warnings. > The HTML pages are in build/html. > Copying rendered example notebooks > mkdir -p build/html/examples/notebooks/generated > cp source/examples/notebooks/generated/*html > build/html/examples/notebooks/generated > #../tools/examples_rst.py > ../tools/fold_toc.py build/html/index.html > Traceback (most recent call last): > File "../tools/fold_toc.py", line 12, in > doc = open(filename, encoding='utf8').read() so the script now is python3. adjust shebang? alternative might work to patch it with smth like from io import open -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik
Re: New version of statsmodels is out possibly fixing important bug - any volunteer
Hi Yarislav, On Sun, Aug 12, 2018 at 02:40:28PM -0400, Yaroslav Halchenko wrote: > Fwiw I will look into updating soon unless someone beats me to it I guess this went out of your focus. I tried my best to update Git[1] to version 0.9.0. The package build process stumbles about doc creation: ... copying images... [ 97%] savefig/var_fevd.png copying images... [100%] savefig/dvar_forecast.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 33 warnings. The HTML pages are in build/html. Copying rendered example notebooks mkdir -p build/html/examples/notebooks/generated cp source/examples/notebooks/generated/*html build/html/examples/notebooks/generated #../tools/examples_rst.py ../tools/fold_toc.py build/html/index.html Traceback (most recent call last): File "../tools/fold_toc.py", line 12, in doc = open(filename, encoding='utf8').read() TypeError: 'encoding' is an invalid keyword argument for this function make[2]: *** [Makefile:77: html] Error 1 make[2]: Leaving directory '/build/statsmodels-0.9.0/docs' make[1]: *** [debian/rules:39: override_dh_auto_build-indep] Error 2 ... Any hint / patch / take over would be really welcome. Kind regards Andreas. > On August 11, 2018 1:50:42 AM EDT, Andreas Tille wrote: > >Hi, > > > >it seems upstream dealt with issue #3892 in latest upstream version > >0.9. > >As far as I can see this will fix #880245. > > > >Any volunteer to upgrade the package? > > > >Kind regards > > > > Andreas. [1] https://salsa.debian.org/science-team/statsmodels -- http://fam-tille.de
New version of statsmodels is out possibly fixing important bug - any volunteer
Hi, it seems upstream dealt with issue #3892 in latest upstream version 0.9. As far as I can see this will fix #880245. Any volunteer to upgrade the package? Kind regards Andreas. -- http://fam-tille.de
