Re: RFH: petsc
On Mon, 2010-07-12 at 18:32 -0400, Adam C Powell IV wrote: On Mon, 2010-07-12 at 23:11 +0200, Johannes Ring wrote: Hi Adam, On Wed, Jul 7, 2010 at 5:51 PM, Adam C Powell IV hazel...@debian.org wrote: Hello, I'm having two problems with PETSc, and need some help. Second, I just uploaded a new version, and although the build process reports that it builds the libraries just fine, they are not installed during the install step -- though on my machine it all works fine. This seems odd to me, as install is just a matter of copying everything: cp -a linux-gnu-c-opt/lib debian/libpetsc3.1-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/ The linux-gnu-c-opt/lib directory is PETSC_LIB_DIR, but it must be empty, because the corresponding directory in the package is empty. Can someone else try to build it, and let me know what's in the linux-gnu-c-opt/lib directory at the end? I built PETSc in pbuilder and this is the contents in the linux-gnu-c-opt/lib folder: # ls -lh linux-gnu-c-opt/lib/ total 19M -rw-r--r-- 1 root root 13M Jul 12 20:33 libpetsc.a -rwxr-xr-x 1 root root 6.0M Jul 12 20:33 libpetsc.so Thanks very much Johannes. I'm consistently getting: % ls -lh linux-gnu-c-opt/lib/ total 19M -rw-r--r-- 1 hazelsct 1003 13M 2010-07-06 23:39 libpetsc.a lrwxrwxrwx 1 hazelsct 1003 15 2010-07-06 23:39 libpetsc.so - libpetsc.so.3.1* -rwxr-xr-x 1 hazelsct 1003 6.0M 2010-07-06 23:39 libpetsc.so.3.1* The install step should be putting all of these into debian/libpetsc-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/lib but for some reason the buildds are not getting the libpetsc.a or the .so symlink, let alone the name-versioned lib... Okay, you've given me some ideas, now back to the drawing board. D'oh, I'm an idiot! There's no patch target in PETSc's debian/rules. I'll try that, so the patches actually apply on the buildds. Yup, buildd logs show that the clean target removes all the patches, then it goes ahead and builds without re-applying them. That should also get rid of rpath in environment variables, closing another bug. Fixing that right now and uploading... -Adam -- GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6 Engineering consulting with open source tools http://www.opennovation.com/ signature.asc Description: This is a digitally signed message part
Re: RFH: petsc
Hi Adam, On Wed, Jul 7, 2010 at 5:51 PM, Adam C Powell IV hazel...@debian.org wrote: Hello, I'm having two problems with PETSc, and need some help. First is the HPPA issue (below), for which I just supplied a list of arches for binary packages which includes everything but HPPA. But unlike say openmpi, the HPPA buildd doesn't indicate Not-for-us, but tried to build it. [1] How do I specify that petsc is not for hppa? Or will that change happen automatically following resolution of ftp.debian.org RM bug 588344 (just filed)? [1] https://buildd.debian.org/status/package.php?p=petsc Second, I just uploaded a new version, and although the build process reports that it builds the libraries just fine, they are not installed during the install step -- though on my machine it all works fine. This seems odd to me, as install is just a matter of copying everything: cp -a linux-gnu-c-opt/lib debian/libpetsc3.1-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/ The linux-gnu-c-opt/lib directory is PETSC_LIB_DIR, but it must be empty, because the corresponding directory in the package is empty. Can someone else try to build it, and let me know what's in the linux-gnu-c-opt/lib directory at the end? I built PETSc in pbuilder and this is the contents in the linux-gnu-c-opt/lib folder: # ls -lh linux-gnu-c-opt/lib/ total 19M -rw-r--r-- 1 root root 13M Jul 12 20:33 libpetsc.a -rwxr-xr-x 1 root root 6.0M Jul 12 20:33 libpetsc.so Johannes Thanks, Adam On Tue, 2010-07-06 at 08:46 -0400, Adam C Powell IV wrote: On Mon, 2010-07-05 at 20:24 +0200, Christophe Prud'homme wrote: what are your plans regarding the build issue of petsc3.1 on hppa ? I have no idea on how to resolve this issue. It seems to be a low-level problem with python, and there was a suggestion that certain kernels worked and others didn't. And it sometimes builds, sometimes does not -- when the problem first showed up, it built approximately once out of every three attempts, but the last several attempts have all failed. So it's a complex HPPA-only issue which seems like a lot more trouble to solve than it's worth. at the moment this issue blocks slepc and life from reaching testing Should I change the build-depends to petsc 3.0 on hppa ? or are you planning an upload the next few days ? The best way forward I know of is to make this a non-hppa package, which all of its derivatives would be as well. The problem exists on petsc 3.0 as well, whose hppa version needs to be removed from the archive. I need to take care of one other issue, and should be able to upload this later this week. -Adam -- GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6 Engineering consulting with open source tools http://www.opennovation.com/ -- To UNSUBSCRIBE, email to debian-science-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/aanlktinlqq7n0j3ob8abzj7yb8qrsopij6lp1a4re...@mail.gmail.com
Re: RFH: petsc
On Mon, 2010-07-12 at 23:11 +0200, Johannes Ring wrote: Hi Adam, On Wed, Jul 7, 2010 at 5:51 PM, Adam C Powell IV hazel...@debian.org wrote: Hello, I'm having two problems with PETSc, and need some help. Second, I just uploaded a new version, and although the build process reports that it builds the libraries just fine, they are not installed during the install step -- though on my machine it all works fine. This seems odd to me, as install is just a matter of copying everything: cp -a linux-gnu-c-opt/lib debian/libpetsc3.1-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/ The linux-gnu-c-opt/lib directory is PETSC_LIB_DIR, but it must be empty, because the corresponding directory in the package is empty. Can someone else try to build it, and let me know what's in the linux-gnu-c-opt/lib directory at the end? I built PETSc in pbuilder and this is the contents in the linux-gnu-c-opt/lib folder: # ls -lh linux-gnu-c-opt/lib/ total 19M -rw-r--r-- 1 root root 13M Jul 12 20:33 libpetsc.a -rwxr-xr-x 1 root root 6.0M Jul 12 20:33 libpetsc.so Thanks very much Johannes. I'm consistently getting: % ls -lh linux-gnu-c-opt/lib/ total 19M -rw-r--r-- 1 hazelsct 1003 13M 2010-07-06 23:39 libpetsc.a lrwxrwxrwx 1 hazelsct 1003 15 2010-07-06 23:39 libpetsc.so - libpetsc.so.3.1* -rwxr-xr-x 1 hazelsct 1003 6.0M 2010-07-06 23:39 libpetsc.so.3.1* The install step should be putting all of these into debian/libpetsc-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/lib but for some reason the buildds are not getting the libpetsc.a or the .so symlink, let alone the name-versioned lib... Okay, you've given me some ideas, now back to the drawing board. -Adam -- GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6 Engineering consulting with open source tools http://www.opennovation.com/ signature.asc Description: This is a digitally signed message part
RFH: petsc
Hello, I'm having two problems with PETSc, and need some help. First is the HPPA issue (below), for which I just supplied a list of arches for binary packages which includes everything but HPPA. But unlike say openmpi, the HPPA buildd doesn't indicate Not-for-us, but tried to build it. [1] How do I specify that petsc is not for hppa? Or will that change happen automatically following resolution of ftp.debian.org RM bug 588344 (just filed)? [1] https://buildd.debian.org/status/package.php?p=petsc Second, I just uploaded a new version, and although the build process reports that it builds the libraries just fine, they are not installed during the install step -- though on my machine it all works fine. This seems odd to me, as install is just a matter of copying everything: cp -a linux-gnu-c-opt/lib debian/libpetsc3.1-dev/usr/lib/petscdir/3.1/linux-gnu-c-opt/ The linux-gnu-c-opt/lib directory is PETSC_LIB_DIR, but it must be empty, because the corresponding directory in the package is empty. Can someone else try to build it, and let me know what's in the linux-gnu-c-opt/lib directory at the end? Thanks, Adam On Tue, 2010-07-06 at 08:46 -0400, Adam C Powell IV wrote: On Mon, 2010-07-05 at 20:24 +0200, Christophe Prud'homme wrote: what are your plans regarding the build issue of petsc3.1 on hppa ? I have no idea on how to resolve this issue. It seems to be a low-level problem with python, and there was a suggestion that certain kernels worked and others didn't. And it sometimes builds, sometimes does not -- when the problem first showed up, it built approximately once out of every three attempts, but the last several attempts have all failed. So it's a complex HPPA-only issue which seems like a lot more trouble to solve than it's worth. at the moment this issue blocks slepc and life from reaching testing Should I change the build-depends to petsc 3.0 on hppa ? or are you planning an upload the next few days ? The best way forward I know of is to make this a non-hppa package, which all of its derivatives would be as well. The problem exists on petsc 3.0 as well, whose hppa version needs to be removed from the archive. I need to take care of one other issue, and should be able to upload this later this week. -Adam -- GPG fingerprint: D54D 1AEE B11C CE9B A02B C5DD 526F 01E8 564E E4B6 Engineering consulting with open source tools http://www.opennovation.com/ signature.asc Description: This is a digitally signed message part
