Good Day

[Amanda Murphy]

My name is Amanda Murphy, I'm the personal account officer to late Engr
Gabson and my client left a total sum of US$22,500,000,
  Please I need you to stand as the next of kin to the late Engr Gabson as
my proposal needs a quick audience, as time is of great importance and I
urge you to contact me If you want to have the full details.

Thanks and Please treat it as confidential. I await your quick response.

Best Regards

Amanda Murphy
(Head Of Commercial Banking HSBC)
+1-(786)-864-5786
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Bug#999519: xrayutilities: diff for NMU version 1.7.1-2.1

[Dominik Kriegner]

Dear Debian team,

I think the patch can be used like this. I'll also release a new upstream
version with this patch hopefully today.

kind regards
Dominik

On Tue, Nov 23, 2021 at 2:48 AM Stefano Rivera  wrote:

> Control: tags 999519 + patch
> Control: tags 999519 + pending
>
> Dear maintainer,
>
> I've prepared an NMU for xrayutilities (versioned as 1.7.1-2.1) and
> uploaded it to DELAYED/2. Please feel free to tell me if I
> should delay it longer.
>
> Also filed as:
> https://salsa.debian.org/science-team/python-xrayutilities/-/merge_requests/1
>
> Regards,
>
> SR
>
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taurus 5.0.0-1 MIGRATED to testing

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qiskit-ibmq-provider REMOVED from testing

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FYI: The status of the qiskit-ibmq-provider source package
in Debian's testing distribution has changed.

  Previous version: 0.4.6-3
  Current version:  (not in testing)
  Hint: 
Bug #999540: qiskit-terra: FTBFS with matplotlib 3.5 (in experimental): 
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit 
code 13
# in qiskit-terra
Bug #997498: qiskit-ibmq-provider: FTBFS: dh_auto_test: error: pybuild 
--test --test-pytest -i python{version} -p 3.9 returned exit code 13

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qiskit-terra is marked for autoremoval from testing

[Debian testing autoremoval watch]

qiskit-terra 0.12.0-2.1 is marked for autoremoval from testing on 2021-12-26

It is affected by these RC bugs:
999540: qiskit-terra: FTBFS with matplotlib 3.5 (in experimental): 
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit 
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getfem++ is marked for autoremoval from testing

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getfem++ 5.3+dfsg1-3 is marked for autoremoval from testing on 2021-12-22

It is affected by these RC bugs:
948018: getfem++: getfem++: b-d on python3-all-dev, but not built for all 
supported Python3 versions
 https://bugs.debian.org/948018
972349: getfem++: b-d's on python3-all-dev, but only builds for the default 
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hyperspy REMOVED from testing

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FYI: The status of the hyperspy source package
in Debian's testing distribution has changed.

  Previous version: 1.6.1-1
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xrayutilities is marked for autoremoval from testing

[Debian testing autoremoval watch]

xrayutilities 1.7.1-2 is marked for autoremoval from testing on 2021-12-26

It is affected by these RC bugs:
999519: xrayutilities: FTBFS with matplotlib 3.5 (in experimental): 
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s custom 
"--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd 
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gpyfft REMOVED from testing

[Debian testing watch]

FYI: The status of the gpyfft source package
in Debian's testing distribution has changed.

  Previous version: 0.7.0-2
  Current version:  (not in testing)
  Hint: 
Bug #997197: clfft: FTBFS: generator.transpose.cpp:1092:95: error: taking 
address of rvalue [-fpermissive]
# in clfft
Bug #994300: gpyfft: Removal of the python3-*-dbg packages in sid/bookworm

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pyfr REMOVED from testing

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FYI: The status of the pyfr source package
in Debian's testing distribution has changed.

  Previous version: 1.5.0-3
  Current version:  (not in testing)
  Hint: 
Bug #997427: pyfr: FTBFS: Could not import extension tikz (exception: 
cannot import name 'ENOENT' from 'sphinx.util' 
(/usr/lib/python3/dist-packages/sphinx/util/__init__.py))

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python-ltfatpy 1.0.16-6 MIGRATED to testing

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qd REMOVED from testing

[Debian testing watch]

FYI: The status of the qd source package
in Debian's testing distribution has changed.

  Previous version: 2.3.22+dfsg.1-3
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  Hint: 
Bug #997255: qd: FTBFS: fpu.cpp:110:25: error: variable or field 
‘FC_FUNC_’ declared void

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paraview 5.10.0~rc1-1 MIGRATED to testing

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binoculars is marked for autoremoval from testing

[Debian testing autoremoval watch]

binoculars 0.0.6-1 is marked for autoremoval from testing on 2021-12-26

It (build-)depends on packages with these RC bugs:
999519: xrayutilities: FTBFS with matplotlib 3.5 (in experimental): 
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s custom 
"--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd 
{build_dir}; {interpreter} -m unittest2 discover -v;" returned exit code 13
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navarp 1.0.0-2 MIGRATED to testing

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nbsphinx-link 1.3.0-3 MIGRATED to testing

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qiskit-aer is marked for autoremoval from testing

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qiskit-aer 0.4.1-2 is marked for autoremoval from testing on 2021-12-26

It (build-)depends on packages with these RC bugs:
999540: qiskit-terra: FTBFS with matplotlib 3.5 (in experimental): 
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sardana is marked for autoremoval from testing

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sardana 3.0.3-1 is marked for autoremoval from testing on 2021-12-06

It (build-)depends on packages with these RC bugs:
997135: abydos: FTBFS: You must configure the bibtex_bibfiles setting
 https://bugs.debian.org/997135
997478: pyls-black: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i 
python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997478
997481: textdistance: FTBFS: dh_auto_test: error: pybuild --test --test-pytest 
-i python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997481
999524: python-language-server: FTBFS with numpy 1.21 (in experimental): 
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 
returned exit code 13
 https://bugs.debian.org/999524



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taurus is marked for autoremoval from testing

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taurus 4.7.0+dfsg-1 is marked for autoremoval from testing on 2021-12-06

It (build-)depends on packages with these RC bugs:
997135: abydos: FTBFS: You must configure the bibtex_bibfiles setting
 https://bugs.debian.org/997135
997478: pyls-black: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i 
python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997478
997481: textdistance: FTBFS: dh_auto_test: error: pybuild --test --test-pytest 
-i python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997481
999524: python-language-server: FTBFS with numpy 1.21 (in experimental): 
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 
returned exit code 13
 https://bugs.debian.org/999524



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taurus-pyqtgraph is marked for autoremoval from testing

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taurus-pyqtgraph 0.4.6-1 is marked for autoremoval from testing on 2021-12-06

It (build-)depends on packages with these RC bugs:
997135: abydos: FTBFS: You must configure the bibtex_bibfiles setting
 https://bugs.debian.org/997135
997478: pyls-black: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i 
python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997478
997481: textdistance: FTBFS: dh_auto_test: error: pybuild --test --test-pytest 
-i python{version} -p 3.9 returned exit code 13
 https://bugs.debian.org/997481
999524: python-language-server: FTBFS with numpy 1.21 (in experimental): 
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 
returned exit code 13
 https://bugs.debian.org/999524



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pytables_3.6.1-5.1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 20 Nov 2021 23:32:58 -0400
Source: pytables
Architecture: source
Version: 3.6.1-5.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Stefano Rivera 
Closes: 999538
Changes:
 pytables (3.6.1-5.1) unstable; urgency=medium
 .
   * Non-maintainer upload.
   * Patch: Fix FTBFS with numpy >= 1.20 (Closes: #999538)
   * Patch: Fix FTBFS with Python 3.10.
   * Install Python 3.10 C Extensions (2-digit minor version).
Checksums-Sha1:
 3bedd67ad7353cc4bc7c6c5b56db29676e388b66 2144 pytables_3.6.1-5.1.dsc
 6f15b9b0f3dbde2488598f785d601d96f19a161a 23040 pytables_3.6.1-5.1.debian.tar.xz
 a70ee7daa348b63d43839052a28171a6e41998f1 9748 
pytables_3.6.1-5.1_source.buildinfo
Checksums-Sha256:
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pytables_3.6.1-5.1.dsc
 47c22a030d1b3240358a61f60f09a18c760f9082d5a333688d394bee2dccf33c 23040 
pytables_3.6.1-5.1.debian.tar.xz
 bf5c9a7ff67abbebe1a3dc9646a6db8818dd4f7c623e68cd987216e73f384b82 9748 
pytables_3.6.1-5.1_source.buildinfo
Files:
 6973dbe2790b987a2bc442a195e9d581 2144 python optional pytables_3.6.1-5.1.dsc
 582b54e5f9b3863ce2abec25780a2fcc 23040 python optional 
pytables_3.6.1-5.1.debian.tar.xz
 ac7c2bd933816553ea73992c89424977 9748 python optional 
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Processing of pyfai_0.20.0+dfsg1-4.1_source.changes

[Debian FTP Masters]

pyfai_0.20.0+dfsg1-4.1_source.changes uploaded successfully to localhost
along with the files:
  pyfai_0.20.0+dfsg1-4.1.dsc
  pyfai_0.20.0+dfsg1-4.1.debian.tar.xz
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Processed: pyfai: diff for NMU version 0.20.0+dfsg1-4.1

[Debian Bug Tracking System]

Processing control commands:

> tags 1000204 + pending
Bug #1000204 [pyfai] pyfai: FTBFS if built using python3.10 
(collections.MutableSets deprecated)
Added tag(s) pending.

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Bug#1000204: pyfai: diff for NMU version 0.20.0+dfsg1-4.1

[Stefano Rivera]

Control: tags 1000204 + pending

Dear maintainer,

I've prepared an NMU for pyfai (versioned as 0.20.0+dfsg1-4.1) and
uploaded it to DELAYED/5. Please feel free to tell me if I
should delay it longer.

Also filed as https://salsa.debian.org/science-team/pyfai/-/merge_requests/4

Regards,

SR
diff -Nru pyfai-0.20.0+dfsg1/debian/changelog pyfai-0.20.0+dfsg1/debian/changelog
--- pyfai-0.20.0+dfsg1/debian/changelog	2021-09-19 07:57:57.0 -0400
+++ pyfai-0.20.0+dfsg1/debian/changelog	2021-11-22 21:29:59.0 -0400
@@ -1,3 +1,10 @@
+pyfai (0.20.0+dfsg1-4.1) UNRELEASED; urgency=medium
+
+  * Non-maintainer upload.
+  * Patch: Python 3.10 support, thanks Lukas Märdian. (Closes: #1000204)
+
+ -- Stefano Rivera   Mon, 22 Nov 2021 21:29:59 -0400
+
 pyfai (0.20.0+dfsg1-4) unstable; urgency=medium
 
   * Bug fix: "Removal of the python3-*-dbg packages in sid/bookworm",
diff -Nru pyfai-0.20.0+dfsg1/debian/patches/0009-Fix-collections.MutableSets-compat-with-python3.10.patch pyfai-0.20.0+dfsg1/debian/patches/0009-Fix-collections.MutableSets-compat-with-python3.10.patch
--- pyfai-0.20.0+dfsg1/debian/patches/0009-Fix-collections.MutableSets-compat-with-python3.10.patch	1969-12-31 20:00:00.0 -0400
+++ pyfai-0.20.0+dfsg1/debian/patches/0009-Fix-collections.MutableSets-compat-with-python3.10.patch	2021-11-22 21:29:59.0 -0400
@@ -0,0 +1,45 @@
+From: Lukas Märdian 
+Date: Mon, 22 Nov 2021 21:30:44 -0400
+Subject: Fix collections.MutableSets compat with python3.10
+
+collections.MutableSet was deprecated a long time ago and removed with python3.10.
+https://docs.python.org/3/whatsnew/3.10.html#removed
+https://bugs.python.org/issue37324
+
+Using the old class name leads to test failures such as this one:
+==
+ERROR: test_import_all_modules (pyFAI.test.test_bug_regression.TestBugRegression)
+Try to import every single module in the package
+--
+Traceback (most recent call last):
+  File "/<>/pyfai-0.20.0+dfsg1/.pybuild/cpython3_3.10_pyfai/build/pyFAI/test/test_bug_regression.py", line 286, in test_import_all_modules
+raise err
+  File "/<>/pyfai-0.20.0+dfsg1/.pybuild/cpython3_3.10_pyfai/build/pyFAI/test/test_bug_regression.py", line 271, in test_import_all_modules
+load_source(fqn, path)
+  File "/<>/pyfai-0.20.0+dfsg1/.pybuild/cpython3_3.10_pyfai/build/pyFAI/test/test_bug_regression.py", line 78, in load_source
+spec.loader.exec_module(module)
+  File "", line 883, in exec_module
+  File "", line 241, in _call_with_frames_removed
+  File "/<>/pyfai-0.20.0+dfsg1/.pybuild/cpython3_3.10_pyfai/build/pyFAI/utils/orderedset.py", line 30, in 
+class OrderedSet(collections.MutableSet):
+AttributeError: module 'collections' has no attribute 'MutableSet'
+
+Origin: vendor, Ubuntu
+Forwarded: https://github.com/silx-kit/pyFAI/pull/1588
+---
+ pyFAI/utils/orderedset.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/pyFAI/utils/orderedset.py b/pyFAI/utils/orderedset.py
+index de097cf..417490f 100644
+--- a/pyFAI/utils/orderedset.py
 b/pyFAI/utils/orderedset.py
+@@ -27,7 +27,7 @@
+ import collections
+ 
+ 
+-class OrderedSet(collections.MutableSet):
++class OrderedSet(collections.abc.MutableSet):
+ 
+ def __init__(self, iterable=None):
+ self.end = end = []
diff -Nru pyfai-0.20.0+dfsg1/debian/patches/series pyfai-0.20.0+dfsg1/debian/patches/series
--- pyfai-0.20.0+dfsg1/debian/patches/series	2021-09-19 07:57:57.0 -0400
+++ pyfai-0.20.0+dfsg1/debian/patches/series	2021-11-22 21:29:59.0 -0400
@@ -6,3 +6,4 @@
 0006-fix-a-couple-of-test-failing-with-i386.patch
 0007-cleaner-test.patch
 0008-tunning.patch
+0009-Fix-collections.MutableSets-compat-with-python3.10.patch
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  xrayutilities_1.7.1-2.1.dsc
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Processed: xrayutilities: diff for NMU version 1.7.1-2.1

[Debian Bug Tracking System]

Processing control commands:

> tags 999519 + patch
Bug #999519 [src:xrayutilities] xrayutilities: FTBFS with matplotlib 3.5 (in 
experimental): dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s 
custom "--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd 
{build_dir}; {interpreter} -m unittest2 discover -v;" returned exit code 13
Added tag(s) patch.
> tags 999519 + pending
Bug #999519 [src:xrayutilities] xrayutilities: FTBFS with matplotlib 3.5 (in 
experimental): dh_auto_test: error: pybuild --test -i python{version} -p 3.9 -s 
custom "--test-args={interpreter} {dir}/setup.py egg_info -e {build_dir}; cd 
{build_dir}; {interpreter} -m unittest2 discover -v;" returned exit code 13
Added tag(s) pending.

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Bug#999519: xrayutilities: diff for NMU version 1.7.1-2.1

[Stefano Rivera]

Control: tags 999519 + patch
Control: tags 999519 + pending

Dear maintainer,

I've prepared an NMU for xrayutilities (versioned as 1.7.1-2.1) and
uploaded it to DELAYED/2. Please feel free to tell me if I
should delay it longer.

Also filed as: 
https://salsa.debian.org/science-team/python-xrayutilities/-/merge_requests/1

Regards,

SR
diff -Nru xrayutilities-1.7.1/debian/changelog xrayutilities-1.7.1/debian/changelog
--- xrayutilities-1.7.1/debian/changelog	2021-09-19 08:54:46.0 -0400
+++ xrayutilities-1.7.1/debian/changelog	2021-11-22 21:22:36.0 -0400
@@ -1,3 +1,10 @@
+xrayutilities (1.7.1-2.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Patch: matplotlib 3.5 support (Closes: #999519)
+
+ -- Stefano Rivera   Mon, 22 Nov 2021 21:22:36 -0400
+
 xrayutilities (1.7.1-2) unstable; urgency=medium
 
   * Corrected Profile nodocs -> nodoc
diff -Nru xrayutilities-1.7.1/debian/patches/0005-Fix-matplotlib-3.5-issue.patch xrayutilities-1.7.1/debian/patches/0005-Fix-matplotlib-3.5-issue.patch
--- xrayutilities-1.7.1/debian/patches/0005-Fix-matplotlib-3.5-issue.patch	1969-12-31 20:00:00.0 -0400
+++ xrayutilities-1.7.1/debian/patches/0005-Fix-matplotlib-3.5-issue.patch	2021-11-22 21:22:36.0 -0400
@@ -0,0 +1,35 @@
+From: Dominik Kriegner 
+Date: Fri, 12 Nov 2021 12:30:16 +0100
+Subject: Fix matplotlib-3.5 issue.
+
+reported by Debian. The best solution seems to be to avoid the
+problematic keyword argument since we anyhow specified the default
+value.
+
+Bug-Debian: https://bugs.debian.org/999519
+---
+ lib/xrayutilities/simpack/fit.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/lib/xrayutilities/simpack/fit.py b/lib/xrayutilities/simpack/fit.py
+index 8e71783..5d49dcf 100644
+--- a/lib/xrayutilities/simpack/fit.py
 b/lib/xrayutilities/simpack/fit.py
+@@ -13,7 +13,7 @@
+ # You should have received a copy of the GNU General Public License
+ # along with this program; if not, see .
+ #
+-# Copyright (C) 2016-2020 Dominik Kriegner 
++# Copyright (C) 2016-2021 Dominik Kriegner 
+ 
+ import warnings
+ 
+@@ -208,7 +208,7 @@ class FitModel(object):
+ else:
+ self.zord = 1
+ if self.logscale:
+-self.ax.set_yscale("log", nonposy='clip')
++self.ax.set_yscale("log")
+ self.fline = None
+ 
+ def showplot(self, xlab=self.lmodel.xlabelstr,
diff -Nru xrayutilities-1.7.1/debian/patches/series xrayutilities-1.7.1/debian/patches/series
--- xrayutilities-1.7.1/debian/patches/series	2021-09-19 08:54:46.0 -0400
+++ xrayutilities-1.7.1/debian/patches/series	2021-11-22 21:22:36.0 -0400
@@ -2,3 +2,4 @@
 0002-Desactivated-pdf-generation-for-the-doc.patch
 0003-Do-not-change-PYTHONPATH-during-the-build.patch
 0004-Used-the-system-Mathjax.patch
+0005-Fix-matplotlib-3.5-issue.patch
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Processed: block 1000423 with 1000422

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> block 1000423 with 1000422
Bug #1000423 [src:python-biom-format] python-biom-format: FTBFS with Python 
3.10 - Test failures
1000423 was not blocked by any bugs.
1000423 was not blocking any bugs.
Added blocking bug(s) of 1000423: 1000422
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#1000422: pandas: FTBFS with Python 3.10 - Test failures

[Stefano Rivera]

Source: pandas
Version: 1.1.5+dfsg-2
Severity: serious
Justification: FTBFS

Pandas fails to build with Python 3.10.
See: 
https://buildd.debian.org/status/fetch.php?pkg=pandas=amd64=1.1.5%2Bdfsg-2%2Bb1=1637461771=0

=== FAILURES ===
 TestDatetime64SeriesComparison.test_comparison_invalid[None-DataFrame] 

left =0  1  2  3  4
0  0  1  2  3  4
right =0  1  2  3  4
0 2001-01-01 2001-01-02 2001-01-03 2001-01-04 2001-01-05
box = 

def assert_invalid_comparison(left, right, box):
"""
Assert that comparison operations with mismatched types behave 
correctly.

Parameters
--
left : np.ndarray, ExtensionArray, Index, or Series
right : object
box : {pd.DataFrame, pd.Series, pd.Index, tm.to_array}
"""
# Not for tznaive-tzaware comparison

# Note: not quite the same as how we do this for tm.box_expected
xbox = box if box is not Index else np.array

result = left == right
expected = xbox(np.zeros(result.shape, dtype=np.bool_))

tm.assert_equal(result, expected)

result = right == left
tm.assert_equal(result, expected)

result = left != right
tm.assert_equal(result, ~expected)

result = right != left
tm.assert_equal(result, ~expected)

msg = "|".join(
[
"Invalid comparison between",
"Cannot compare type",
"not supported between",
"invalid type promotion",
(
# GH#36706 npdev 1.20.0 2020-09-28
r"The DTypes  and "
r" do not have a common 
DType. "
"For example they cannot be stored in a single array unless 
the "
"dtype is `object`."
),
]
)
with pytest.raises(TypeError, match=msg):
>   left < right

pandas/tests/arithmetic/common.py:89:

Looks like upstream has got there, but a quick search didn't find the
relevant patches, yet:
https://github.com/pandas-dev/pandas/commit/e7efd02c71c48c7968b2f8fdb845a0b0bf61a3fa

SR

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xtensor_0.24.0-1exp1_source.changes ACCEPTED into experimental

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 22 Nov 2021 21:54:42 +0100
Source: xtensor
Architecture: source
Version: 0.24.0-1exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 xtensor (0.24.0-1exp1) experimental; urgency=medium
 .
   * New upstream release.
 - applies debian patches doctest_PR2405.patch,
   test_EXPECT_DOUBLE_EQ_PR2436.patch, doc_sphinx_API.patch
 - Depends (Recommends): libxsimd-dev (>= 8.0.3~)
   * update debian/watch to the latest github pattern
   * debian patch install_headers_PR2462.patch applies upstream PR#2462
 to fix installation of headers.
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  dyssol_1.0~alpha1-2029.gitd7bc300.orig.tar.xz
  dyssol_1.0~alpha1-2029.gitd7bc300-1.debian.tar.xz
  dyssol-data_1.0~alpha1-2029.gitd7bc300-1_all.deb
  dyssol-dbgsym_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  dyssol-doc_1.0~alpha1-2029.gitd7bc300-1_all.deb
  dyssol-gui-dbgsym_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  dyssol-gui_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  dyssol_1.0~alpha1-2029.gitd7bc300-1_amd64.buildinfo
  dyssol_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  libdyssol-dev_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  libdyssol1.0-dbgsym_1.0~alpha1-2029.gitd7bc300-1_amd64.deb
  libdyssol1.0_1.0~alpha1-2029.gitd7bc300-1_amd64.deb

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Bug#1000326: marked as done (xrstools: please make the build reproducible)

[Debian Bug Tracking System]

Your message dated Mon, 22 Nov 2021 14:40:38 +
with message-id 
and subject line Bug#1000326: fixed in xrstools 0.15.0+git20210910+c147919d-2
has caused the Debian Bug report #1000326,
regarding xrstools: please make the build reproducible
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1000326: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000326
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: xrstools
Version: 0.15.0+git20210910+c147919d-1
Severity: wishlist
Tags: patch
User: reproducible-bui...@lists.alioth.debian.org
Usertags: timestamps
X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org

Hi,

Whilst working on the Reproducible Builds effort [0] we noticed that
xrstools could not be built reproducibly.

This was caused by a default keyword argument in the documentation
which contained an absolute/full pathname.

Patch attached that uses the "if-blah-is-none-blah-equals" Python
idiom.

 [0] https://reproducible-builds.org/


Regards,

-- 
  ,''`.
 : :'  : Chris Lamb
 `. `'`  la...@debian.org / chris-lamb.co.uk
   `-
--- a/debian/patches/reproducible_build.patch   1969-12-31 16:00:00.0 
-0800
--- b/debian/patches/reproducible_build.patch   2021-11-21 09:08:37.210875808 
-0800
@@ -0,0 +1,18 @@
+Description: Make the build reproducible
+Author: Chris Lamb 
+Last-Update: 2021-11-21
+
+--- xrstools-0.15.0+git20210910+c147919d.orig/XRStools/xrs_utilities.py
 xrstools-0.15.0+git20210910+c147919d/XRStools/xrs_utilities.py
+@@ -447,8 +447,9 @@ class bragg_refl:
+ np.sqrt(eta**2 - 1))**2
+ return reflectivity_curve, theta_B*180/np.pi, theta_B_correction
+ 
+-def get_nff(self,
+-nff_path = os.path.join(data_installation_dir,'atomic_form_factors')):
++def get_nff(self, nff_path=None):
++if nff_path is None:
++nff_path = 
os.path.join(data_installation_dir,'atomic_form_factors')
+ fname= os.path.join(nff_path, self.crystal.lower()+'.nff')
+ table = np.loadtxt(fname, unpack = True, skiprows = 1)
+ table = np.transpose(table)
--- a/debian/patches/series 2021-11-21 08:56:13.288748075 -0800
--- b/debian/patches/series 2021-11-21 09:08:36.378870580 -0800
@@ -1,2 +1,3 @@
 remove_xrs_wizard_pyqt4.patch
 fix_python_syntax_error.patch
+reproducible_build.patch
--- End Message ---
--- Begin Message ---
Source: xrstools
Source-Version: 0.15.0+git20210910+c147919d-2
Done: Neil Williams 

We believe that the bug you reported is fixed in the latest version of
xrstools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1000...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Neil Williams  (supplier of updated xrstools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Mon, 22 Nov 2021 09:04:05 +
Source: xrstools
Architecture: source
Version: 0.15.0+git20210910+c147919d-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Neil Williams 
Closes: 1000326
Changes:
 xrstools (0.15.0+git20210910+c147919d-2) unstable; urgency=medium
 .
   * Source-only upload, restricting the binaries to amd64 only.
 Not compatible with 32bit architectures & relies on SSE2 support.
   * Apply reproducibility patch for xrs_utilities.py - Thanks Chris Lamb.
 (Closes: #1000326)
   * Apply multiarch hint
Checksums-Sha1:
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xrstools_0.15.0+git20210910+c147919d-2.dsc
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xrstools_0.15.0+git20210910+c147919d-2.debian.tar.xz
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xrstools_0.15.0+git20210910+c147919d-2_amd64.buildinfo
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xrstools_0.15.0+git20210910+c147919d-2_amd64.buildinfo
Files:
 

xrstools_0.15.0+git20210910+c147919d-2_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Mon, 22 Nov 2021 09:04:05 +
Source: xrstools
Architecture: source
Version: 0.15.0+git20210910+c147919d-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Neil Williams 
Closes: 1000326
Changes:
 xrstools (0.15.0+git20210910+c147919d-2) unstable; urgency=medium
 .
   * Source-only upload, restricting the binaries to amd64 only.
 Not compatible with 32bit architectures & relies on SSE2 support.
   * Apply reproducibility patch for xrs_utilities.py - Thanks Chris Lamb.
 (Closes: #1000326)
   * Apply multiarch hint
Checksums-Sha1:
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xrstools_0.15.0+git20210910+c147919d-2.dsc
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xrstools_0.15.0+git20210910+c147919d-2.debian.tar.xz
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Processing of xrstools_0.15.0+git20210910+c147919d-2_source.changes

[Debian FTP Masters]

xrstools_0.15.0+git20210910+c147919d-2_source.changes uploaded successfully to 
localhost
along with the files:
  xrstools_0.15.0+git20210910+c147919d-2.dsc
  xrstools_0.15.0+git20210910+c147919d-2.debian.tar.xz
  xrstools_0.15.0+git20210910+c147919d-2_amd64.buildinfo

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Processed: limit source to xrstools, tagging 1000326

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> limit source xrstools
Limiting to bugs with field 'source' containing at least one of 'xrstools'
Limit currently set to 'source':'xrstools'

> tags 1000326 + pending
Bug #1000326 [src:xrstools] xrstools: please make the build reproducible
Added tag(s) pending.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
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App Development (iPhone, Android and iOS)

[Anamika Singh]

Hello Sir/Madam

Through this letter, we would like to introduce our services and work that
we undertake at our company.

We are established with a sole motto of helping businesses in establishing
themselves in the virtual space. Backed with the team of 45+ qualified IT
professionals who are certified in ‘Google Ad words’ and ‘ISO Standards’,
we are a leading digital marketing company.

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· Website Designing & Development

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The needs of every individual are different. So we customize our package to
suit divergent requirements.

We look forward to meet you personally so that we can discuss about this
proposal in a better way.

Thanking you for your kind consideration

Mrs. Anamika Singh

Marketing Manager
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libatomprobe_0+20210207-1_amd64.changes is NEW

[Debian FTP Masters]

binary:libatomprobe-dev is NEW.
binary:libatomprobe0 is NEW.
binary:libatomprobe-dev is NEW.
binary:libatomprobe0 is NEW.
source:libatomprobe is NEW.

Your package has been put into the NEW queue, which requires manual action
from the ftpteam to process. The upload was otherwise valid (it had a good
OpenPGP signature and file hashes are valid), so please be patient.

Packages are routinely processed through to the archive, and do feel
free to browse the NEW queue[1].

If there is an issue with the upload, you will receive an email from a
member of the ftpteam.

If you have any questions, you may reply to this email.

[1]: https://ftp-master.debian.org/new.html
 or https://ftp-master.debian.org/backports-new.html for *-backports

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Processing of libatomprobe_0+20210207-1_amd64.changes

[Debian FTP Masters]

libatomprobe_0+20210207-1_amd64.changes uploaded successfully to localhost
along with the files:
  libatomprobe_0+20210207-1.dsc
  libatomprobe_0+20210207.orig.tar.gz
  libatomprobe_0+20210207-1.debian.tar.xz
  libatomprobe-dev_0+20210207-1_amd64.deb
  libatomprobe0-dbgsym_0+20210207-1_amd64.deb
  libatomprobe0_0+20210207-1_amd64.deb
  libatomprobe_0+20210207-1_amd64.buildinfo

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python-meshio_5.0.3-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 22 Nov 2021 10:16:04 +0100
Source: python-meshio
Architecture: source
Version: 5.0.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Drew Parsons 
Changes:
 python-meshio (5.0.3-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release.
 - Build-Depends: python3-npx (>= 0.0.22~)
Checksums-Sha1:
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Bug#1000376: calculix-ccx-doc: wrong version of calculix documentation (not updated to v2.17?).

[Jorge Lucas]

Package: calculix-ccx-doc
Version: 2.11-1
Severity: normal
Tags: newcomer

Dear Maintainer,

In debian BULLSEYE, the version of the documentation (2.11) does not match the
version of CalculiX main program (2.17). There are new features in cxx v2.17
that deserve appropriate documentation.


*** Reporter, please consider answering these questions, where appropriate ***

   * What led up to the situation?
   * What exactly did you do (or not do) that was effective (or
 ineffective)?
   * What was the outcome of this action?
   * What outcome did you expect instead?

*** End of the template - remove these template lines ***


-- System Information:
Debian Release: 11.1
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500,
'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 5.10.0-9-amd64 (SMP w/8 CPU threads)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), LANGUAGE not
set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

calculix-ccx-doc depends on no packages.

calculix-ccx-doc recommends no packages.

Versions of packages calculix-ccx-doc suggests:
ii  calculix-ccx  2.17-3

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Processing of python-meshio_5.0.3-1_source.changes

[Debian FTP Masters]

python-meshio_5.0.3-1_source.changes uploaded successfully to localhost
along with the files:
  python-meshio_5.0.3-1.dsc
  python-meshio_5.0.3.orig.tar.xz
  python-meshio_5.0.3-1.debian.tar.xz

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Processed: tagging 994322, tagging 948020, tagging 1000360, tagging 948018, tagging 1000315 ..., affects 994007 ...

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> tags 994322 + experimental
Bug #994322 [src:pycairo] pycairo: Removal of the python3-*-dbg packages in 
sid/bookworm
Added tag(s) experimental.
> tags 948020 - bullseye
Bug #948020 [src:stimfit] stimfit: b-d on python3-all-dev, but not built for 
all supported Python3 versions
Bug #972423 [src:stimfit] b-d's on python3-all-dev, but only builds for the 
default python3
Removed tag(s) bullseye.
Removed tag(s) bullseye.
> tags 1000360 + sid bookworm
Bug #1000360 [src:segyio] segyio: FTBFS with Python 3.10
Added tag(s) bookworm and sid.
> tags 948018 - bullseye
Bug #948018 [src:getfem++] getfem++: b-d on python3-all-dev, but not built for 
all supported Python3 versions
Bug #972349 [src:getfem++] b-d's on python3-all-dev, but only builds for the 
default python3
Removed tag(s) bullseye.
Removed tag(s) bullseye.
> tags 1000315 + sid bookworm
Bug #1000315 {Done: Boyuan Yang } [src:compreffor] 
compreffor: FTBFS with Python 3.10
Added tag(s) bookworm and sid.
> reassign 994007 src:python-lsp-server
Bug #994007 {Done: Jochen Sprickerhof } 
[src:python-language-server] python-language-server: Consider switch to the 
python-lsp-server fork
Bug reassigned from package 'src:python-language-server' to 
'src:python-lsp-server'.
Ignoring request to alter found versions of bug #994007 to the same values 
previously set
No longer marked as fixed in versions python-lsp-server/1.2.2-1.
> fixed 994007 1.2.2-1
Bug #994007 {Done: Jochen Sprickerhof } 
[src:python-lsp-server] python-language-server: Consider switch to the 
python-lsp-server fork
Marked as fixed in versions python-lsp-server/1.2.2-1.
> affects 994007 + src:python-language-server
Bug #994007 {Done: Jochen Sprickerhof } 
[src:python-lsp-server] python-language-server: Consider switch to the 
python-lsp-server fork
Added indication that 994007 affects src:python-language-server
> reassign 990537 llvm-12
Bug #990537 {Done: Sylvestre Ledru } [llvm-11] llvm-11: 
llvm-mt should be built with libxml support
Bug reassigned from package 'llvm-11' to 'llvm-12'.
No longer marked as found in versions llvm-toolchain-11/1:11.0.1-2.
No longer marked as fixed in versions llvm-toolchain-12/1:12.0.1-2.
> fixed 990537 1:12.0.1-2
Bug #990537 {Done: Sylvestre Ledru } [llvm-12] llvm-11: 
llvm-mt should be built with libxml support
Marked as fixed in versions llvm-toolchain-12/1:12.0.1-2.
> affects 990537 + llvm-11
Bug #990537 {Done: Sylvestre Ledru } [llvm-12] llvm-11: 
llvm-mt should be built with libxml support
Added indication that 990537 affects llvm-11
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
1000315: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000315
1000360: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000360
948018: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948018
948020: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948020
972349: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972349
972423: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972423
990537: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=990537
994007: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994007
994322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994322
Debian Bug Tracking System
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ensmallen_2.18.1-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Format: 1.8
Date: Mon, 22 Nov 2021 08:51:31 +
Source: ensmallen
Architecture: source
Version: 2.18.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Barak A. Pearlmutter 
Changes:
 ensmallen (2.18.1-1) unstable; urgency=medium
 .
   * New upstream version
 - fix which should solve armel arch test issue
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Thank you for your contribution to Debian.

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Processing of ensmallen_2.18.1-1_source.changes

[Debian FTP Masters]

ensmallen_2.18.1-1_source.changes uploaded successfully to localhost
along with the files:
  ensmallen_2.18.1-1.dsc
  ensmallen_2.18.1.orig.tar.xz
  ensmallen_2.18.1-1.debian.tar.xz
  ensmallen_2.18.1-1_source.buildinfo

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ros-rviz_1.14.11+dfsg-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Accepted:

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Date: Mon, 22 Nov 2021 08:28:07 +0100
Source: ros-rviz
Architecture: source
Version: 1.14.11+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Changes:
 ros-rviz (1.14.11+dfsg-1) unstable; urgency=medium
 .
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   * Update d/copyright
   * Switch to dh-sequence-sip3
   * Enable tests
   * Rebase patches
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Thank you for your contribution to Debian.

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Processed: raise severity of -dbg leaf packages

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> severity 994310 serious
Bug #994310 [src:meliae] meliae: Removal of the python3-*-dbg packages in 
sid/bookworm
Severity set to 'serious' from 'important'
> severity 994322 serious
Bug #994322 [src:pycairo] pycairo: Removal of the python3-*-dbg packages in 
sid/bookworm
Severity set to 'serious' from 'important'
> severity 994348 serious
Bug #994348 [src:python-apt] python-apt: Removal of the python3-*-dbg packages 
in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994355 serious
Bug #994355 [src:python-ldap] python-ldap: Removal of the python3-*-dbg 
packages in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994359 serious
Bug #994359 [src:python-llfuse] python-llfuse: Removal of the python3-*-dbg 
packages in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994362 serious
Bug #994362 [src:python-multidict] python-multidict: Removal of the 
python3-*-dbg packages in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994365 serious
Bug #994365 [src:python-pylibacl] python-pylibacl: Removal of the python3-*-dbg 
packages in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994366 serious
Bug #994366 [src:python-pyxattr] python-pyxattr: Removal of the python3-*-dbg 
packages in sid/bookworm
Severity set to 'serious' from 'important'
> severity 994374 serious
Bug #994374 [src:reprozip] reprozip: Removal of the python3-*-dbg packages in 
sid/bookworm
Severity set to 'serious' from 'important'
> severity 994383 serious
Bug #994383 [src:twisted] twisted: Removal of the python3-*-dbg packages in 
sid/bookworm
Severity set to 'serious' from 'important'
> severity 994385 serious
Bug #994385 [src:uvloop] uvloop: Removal of the python3-*-dbg packages in 
sid/bookworm
Severity set to 'serious' from 'important'
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
994310: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994310
994322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994322
994348: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994348
994355: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994355
994359: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994359
994362: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994362
994365: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994365
994366: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994366
994374: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994374
994383: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994383
994385: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994385
Debian Bug Tracking System
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