Bug#1058127: marked as done (python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?)

[Debian Bug Tracking System]

Your message dated Tue, 16 Jan 2024 07:35:06 +
with message-id 
and subject line Bug#1058127: fixed in python-mpiplus 0.0.2+ds-1
has caused the Debian Bug report #1058127,
regarding python-mpiplus: FTBFS: AttributeError: module 'configparser' has no 
attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1058127: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1058127
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-mpiplus
Version: 0.0.1-2
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20231212 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<>'
> dh_auto_clean
> I: pybuild base:310: python3.12 setup.py clean 
> /<>/versioneer.py:421: SyntaxWarning: invalid escape sequence 
> '\s'
>   LONG_VERSION_PY['git'] = '''
> Traceback (most recent call last):
>   File "/<>/setup.py", line 16, in 
> version=versioneer.get_version(),
> 
>   File "/<>/versioneer.py", line 1480, in get_version
> return get_versions()["version"]
>^^
>   File "/<>/versioneer.py", line 1412, in get_versions
> cfg = get_config_from_root(root)
>   ^^
>   File "/<>/versioneer.py", line 342, in get_config_from_root
> parser = configparser.SafeConfigParser()
>  ^
> AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. 
> Did you mean: 'RawConfigParser'?
> E: pybuild pybuild:395: clean: plugin distutils failed with: exit code=1: 
> python3.12 setup.py clean 
> dh_auto_clean: error: pybuild --clean -i python{version} -p "3.12 3.11" 
> returned exit code 13
> make[1]: *** [debian/rules:12: override_dh_auto_clean] Error 25


The full build log is available from:
http://qa-logs.debian.net/2023/12/12/python-mpiplus_0.0.1-2_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231212;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na=ign=7=7=only=ftbfs-20231212=lu...@debian.org=1=1=1=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: python-mpiplus
Source-Version: 0.0.2+ds-1
Done: Andrius Merkys 

We believe that the bug you reported is fixed in the latest version of
python-mpiplus, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1058...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andrius Merkys  (supplier of updated python-mpiplus package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA512

Format: 1.8
Date: Tue, 16 Jan 2024 01:46:34 -0500
Source: python-mpiplus
Architecture: source
Version: 0.0.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Andrius Merkys 
Closes: 1058127
Changes:
 python-mpiplus (0.0.2+ds-1) unstable; urgency=medium
 .
   * New upstream version 0.0.2+ds
   * Exclude versioneer.py, depend on python3-versioneer instead
 (Closes: #1058127)
   * Simplify debian/rules.
   * Switch testsuite to autopkgtest-pkg-pybuild.
   * Update debian/copyright.
   * Update standards version to 4.6.2, no changes needed.
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python-mpiplus_0.0.2+ds-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Thank you for your contribution to Debian.



Accepted:

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Hash: SHA512

Format: 1.8
Date: Tue, 16 Jan 2024 01:46:34 -0500
Source: python-mpiplus
Architecture: source
Version: 0.0.2+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Andrius Merkys 
Closes: 1058127
Changes:
 python-mpiplus (0.0.2+ds-1) unstable; urgency=medium
 .
   * New upstream version 0.0.2+ds
   * Exclude versioneer.py, depend on python3-versioneer instead
 (Closes: #1058127)
   * Simplify debian/rules.
   * Switch testsuite to autopkgtest-pkg-pybuild.
   * Update debian/copyright.
   * Update standards version to 4.6.2, no changes needed.
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numba REMOVED from testing

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FYI: The status of the numba source package
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  Previous version: 0.57.1+dfsg-1
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mlpack 4.3.0-2 MIGRATED to testing

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FYI: The status of the mlpack source package
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  Previous version: 4.3.0-1
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python-hdf5plugin is marked for autoremoval from testing

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python-hdf5plugin 4.0.1-3 is marked for autoremoval from testing on 2024-02-15

It is affected by these RC bugs:
1059842: python3-hdf5plugin: FTBFS: test fails: ZFP lib not compiled with 
-DBIT_STREAM_WORD_TYPE=uint8
 https://bugs.debian.org/1059842



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fenicsx-performance-tests 0.7.2-1 MIGRATED to testing

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Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

[Yogeswaran Umasankar]

Hi Andrius,
I have removed the hard-coded version number from setup.py. I found that
the issue was due to changes in PEP440 version naming convention in
versioneer. For this package no need python3-versioneer, upstream has
its own versioneer.py. The work around is, once have everything in
master branch create a tag with just the version number (0.0.2-1)
instead of debian/version number (debian/0.0.2-1).

I have forked python-mpiplus [0] for you to check the changes and to see
how it works before you decide to incorporate the changes. Feel free to
MR the fork and make any further changes needed.

[0] https://salsa.debian.org/yogu/python-mpiplus

Best,
Yogeswaran.


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nauty_2.8.8+ds-2_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Thank you for your contribution to Debian.



Accepted:

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Source: nauty
Built-For-Profiles: noudeb
Architecture: source
Version: 2.8.8+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Doug Torrance 
Changes:
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 .
   * Upload to unstable.
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Bug#1060862: freeimage: CVE-2023-47995

[Salvatore Bonaccorso]

Source: freeimage
Version: 3.18.0+ds2-10
Severity: important
Tags: security upstream
X-Debbugs-Cc: car...@debian.org, Debian Security Team 

Hi,

The following vulnerability was published for freeimage.

CVE-2023-47995[0]:
| Buffer Overflow vulnerability in
| BitmapAccess.cpp::FreeImage_AllocateBitmap in FreeImage 3.18.0
| allows attackers to cause a denial of service.

The only reference for now is [1] unclear if there is some development
around it.


If you fix the vulnerability please also make sure to include the
CVE (Common Vulnerabilities & Exposures) id in your changelog entry.

For further information see:

[0] https://security-tracker.debian.org/tracker/CVE-2023-47995
https://www.cve.org/CVERecord?id=CVE-2023-47995
[1] https://github.com/thelastede/FreeImage-cve-poc/tree/master/CVE-2023-47995

Please adjust the affected versions in the BTS as needed.

Regards,
Salvatore

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plplot_5.15.0+dfsg2-8_amd64.changes ACCEPTED into experimental

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Accepted:

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Date: Mon, 08 Jan 2024 16:57:42 -0300
Source: plplot
Binary: libcsirocsa0 libcsirocsa0-dbgsym libcsironn0 libcsironn0-dbgsym 
libplplot-data libplplot-dev libplplot-java libplplot-java-dbgsym libplplot-lua 
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plplot-tcl-bin-dbgsym plplot-tcl-dbgsym plplot-tcl-dev python3-plplot 
python3-plplot-dbgsym python3-plplot-qt python3-plplot-qt-dbgsym
Architecture: source amd64 all
Version: 5.15.0+dfsg2-8
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Rafael Laboissière 
Description:
 libcsirocsa0 - Scientific plotting library (CSIRO csa library)
 libcsironn0 - Scientific plotting library (CSIRO nn library)
 libplplot-data - Scientific plotting library (data files)
 libplplot-dev - Scientific plotting library (development files)
 libplplot-java - Scientific plotting library (Java bindings)
 libplplot-lua - Scientific plotting library (Lua bindings)
 libplplot-ocaml - OCaml bindings for the scientific plotting library
 libplplot-ocaml-dev - OCaml support for the PLplot plotting library 
(development files)
 libplplot17 - Scientific plotting library
 libplplotada-dev - Ada support for PLplot, a plotting library (development 
files)
 libplplotada4.2 - Ada support for PLplot, a plotting library
 libplplotcxx15 - Scientific plotting library (C++ binding)
 libplplotfortran0 - Scientific plotting library (fortran bindings)
 libplplotqt2 - Scientific plotting library (Qt bindings)
 libplplotwxwidgets1 - Scientific plotting library (wxWidgets bindings)
 libqsastime-dev - Time format conversion library (development files)
 libqsastime0 - Time format conversion library
 octave-plplot - Octave support for PLplot, a plotting library
 plplot-doc - Documentation for PLplot, a plotting library
 plplot-driver-cairo - Scientific plotting library (Cairo driver)
 plplot-driver-qt - Scientific plotting library (Qt driver)
 plplot-driver-wxwidgets - Scientific plotting library (wxWidgets driver)
 plplot-driver-xwin - Scientific plotting library (X11 driver)
 plplot-examples - Examples for PLplot, a plotting library
 plplot-tcl - Tcl/Tk support for PLplot, a plotting library
 plplot-tcl-bin - Tcl/Tk tools for PLplot, a plotting library
 plplot-tcl-dev - Tcl/Tk development support for PLplot, a plotting library
 python3-plplot - Python support for PLplot, a plotting library
 python3-plplot-qt - Scientific plotting library (Python Qt GUI)
Changes:
 plplot (5.15.0+dfsg2-8) experimental; urgency=medium
 .
   [ Nicolas Boulenguez ]
   * ada: build with gnat-13, dh-ada-library/9. New SOversion, unversioned -dev.
 Build with gnat-13.  Rename library package with new SOversion.
 Build with dh-ada-library/9. Remove version from -dev package name.
 Provide a name containing a hash.
 Build-Depend: gnat instead of gnat-13. Break/Replace previous -devs.
   * ada: restrict autopkgtest dependencies now that -dev carries no version
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[bts-link] source package src:spyder

[debian-bts-link]

#
# bts-link upstream status pull for source package src:spyder
# see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html
# https://bts-link-team.pages.debian.net/bts-link/
#

user debian-bts-l...@lists.debian.org

# remote status report for #1056530 (http://bugs.debian.org/1056530)
# Bug title: spyder's autopkg tests fail with Python 3.12
#  * https://github.com/spyder-ide/spyder/issues/21688
#  * remote status changed: (?) -> open
usertags 1056530 + status-open

thanks

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Bug#1058127: python-mpiplus: FTBFS: AttributeError: module 'configparser' has no attribute 'SafeConfigParser'. Did you mean: 'RawConfigParser'?

[Andrius Merkys]

Hi Yogeswaran,

On 2024-01-14 18:46, Yogeswaran Umasankar wrote:

I created a patch for fixing AttributeError: module 'configparser' has
no attribute 'SafeConfigParser'. In the process I have updated it to the
latest upstream too. I’ve attached the debdiff for you to check out.


I noticed you have hard-coded the version number in setup.py. I would 
suggest against doing that as maintainer(s) will have to refresh this 
patch each time a new upstream release is imported. Manual tasks tend to 
be easily overlooked.


I think a better fix would be to use versioneer packaged in Debian 
package python3-versioneer, although I have not tried that.


Best wishes,
Andrius

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Bug#1056694: marked as done (depends on atlas, which is obsolete and scheduled for removal)

[Debian Bug Tracking System]

Your message dated Mon, 15 Jan 2024 16:44:14 +0100
with message-id 
and subject line Re: depends on atlas, which is obsolete and scheduled for 
removal
has caused the Debian Bug report #1056694,
regarding depends on atlas, which is obsolete and scheduled for removal
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1056694: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1056694
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-escript
Version: 5.6-5
Severity: normal
Tags: sid trixie
User: debian-scie...@lists.debian.org
Usertags: atlas-rm

Dear Maintainer,

python3-escript and python3-escript-mpi both depend (only on armel) on
libatlas3-base, which is produced by the source package atlas. At this stage I
admit I don’t really understand where that dependency comes from.

atlas is obsolete and scheduled to be removed from Debian, ideally by the
trixie release. See the following thread on the Debian Science list for more
details:

 
https://lists.debian.org/msgid-search/4311acc16afb473599c79bd5b17a8b734c2f8d2b.ca...@debian.org

As a consequence, please drop any (build-)dependency on atlas.

This should normally be straightforward to achieve, by simply replacing atlas
with another BLAS (and possibly also LAPACK) implementation.

Ideally, packages should Build-Depend on the Netlib reference implementation
(libblas-dev, and liblapack-dev where required), and not enforce anything in
the Depends field of binary packages (dpkg-shlibdeps will automatically add the
appropriate "libblas3 | libblas.so.3" entry to ${shlibs:Depends}).

Alternative implementations may be given in Build-Depends for the ease 
of users making local builds with an optimized implementation installed, 
but the generic reference implementation should be placed first to be 
used by buildds. The simplest example is

  Build-Depends: libblas-dev | libblas.so,
 liblapack-dev | liblapack.so

where specific optimized implementations may provide the
libblas.so/liblapack.so pseudo-package.

Similarly, if one wants to encourage users to install an optimized
implementation at runtime, then one can add

  Recommends: libopenblas0 | libblis4

in binary packages.

Also note that if your package needs libcblas (which is currently only provided
by libatlas-base-dev), then the solution is to modify the build system so that
it rather uses libblas (because, under Debian, the latter already incorporates
the symbols provided by libcblas).

Thanks for your work,

--
⢀⣴⠾⠻⢶⣦⠀  Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁  Debian Developer
⢿⡄⠘⠷⠚⠋⠀  https://sebastien.villemot.name
⠈⠳⣄  https://www.debian.org
--- End Message ---
--- Begin Message ---
Le vendredi 24 novembre 2023 à 18:02 +0100, Sébastien Villemot a
écrit :
> python3-escript and python3-escript-mpi both depend (only on armel) on
> libatlas3-base, which is produced by the source package atlas. At this stage I
> admit I don’t really understand where that dependency comes from.

The dependency on atlas on the armel architecture is no longer present.
Hence closing.

-- 
⢀⣴⠾⠻⢶⣦⠀  Sébastien Villemot
⣾⠁⢠⠒⠀⣿⡁  Debian Developer
⢿⡄⠘⠷⠚⠋⠀  https://sebastien.villemot.name
⠈⠳⣄  https://www.debian.org



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suitesparse_7.5.1+dfsg-1_source.changes ACCEPTED into unstable

[Debian FTP Masters]

Thank you for your contribution to Debian.



Accepted:

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Hash: SHA512

Format: 1.8
Date: Mon, 15 Jan 2024 15:53:24 +0100
Source: suitesparse
Architecture: source
Version: 1:7.5.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 

Changed-By: Sébastien Villemot 
Changes:
 suitesparse (1:7.5.1+dfsg-1) unstable; urgency=medium
 .
   * New upstream version 7.5.1+dfsg
   * d/copyright: reflect upstream changes
   * paru-doc-clean.patch: drop patch, applied upstream
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Processing of suitesparse_7.5.1+dfsg-1_source.changes

[Debian FTP Masters]

suitesparse_7.5.1+dfsg-1_source.changes uploaded successfully to localhost
along with the files:
  suitesparse_7.5.1+dfsg-1.dsc
  suitesparse_7.5.1+dfsg.orig.tar.xz
  suitesparse_7.5.1+dfsg-1.debian.tar.xz
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Bug#1060846: freecad: Include fcinfo script in the built package

[Nicolas Peugnet]

Package: freecad
Version: 0.20.2+dfsg1-4
Severity: wishlist

Dear Maintainer,

It would be convenient if the freecad binary package (or the maybe the
freecad-python3 one) included the `fcinfo` python script [1].
This tool is recomended in FreeCAD's wiki as a way to view
human-readable diffs of .FCStd files [2]. It does not have to be in the
path, though I think it could be useful.

[1] https://github.com/FreeCAD/FreeCAD/blob/main/src/Tools/fcinfo
[2] 
https://wiki.freecad.org/WebTools_Git#Enabling_human-readable_diffs_for_FCStd_files_with_the_fcinfo_utility

-- System Information:
Debian Release: 12.2
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 
'oldstable-security'), (500, 'stable'), (500, 'oldstable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-13-amd64 (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, 
TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), 
LANGUAGE=en_US:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages freecad depends on:
ii  freecad-python3  0.20.2+dfsg1-4

Versions of packages freecad recommends:
ii  calculix-ccx  2.20-1
ii  graphviz  2.42.2-7+b3

Versions of packages freecad suggests:
pn  povray  

-- no debconf information

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ros-rviz_1.14.20+dfsg-2_source.changes ACCEPTED into experimental

[Debian FTP Masters]

Thank you for your contribution to Debian.



Accepted:

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Distribution: experimental
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Jochen Sprickerhof 
Changes:
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 .
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Processing of ros-rviz_1.14.20+dfsg-2_source.changes

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ros-rviz_1.14.20+dfsg-2_source.changes uploaded successfully to localhost
along with the files:
  ros-rviz_1.14.20+dfsg-2.dsc
  ros-rviz_1.14.20+dfsg-2.debian.tar.xz
  ros-rviz_1.14.20+dfsg-2_source.buildinfo

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