Bug#731211: aster: new upstream release, work in progress

2014-03-18 Thread Andrea Palazzi 
Hi,

I did some testing, and I can't build the packages in any way with libmetis or 
libparmetis, but if I remove it from the build-deps I can make the packages.


I propose to disable it for the moment and focus on getting a working and 
lintian-clean package; then we can think about what to do with metis and also 
work to build multiple versions.

Regarding the build system/repository layout, it seems ok to me: 
git-buildpackage fails to me for reasons related to metis and not because of 
the layout of the repository.

When I was working on the package, I've found that the best way to build (but 
not the easiest) is to use git-buildpackage+cowbuilder, in a command like this:
$ git-buildpackage --git-builder="pdebuild --pbuilder cowbuilder --buildresult 
.." --git-ignore-new --git-ignore-branch &> ../build.log

This will build the packages in a pristine environment, and the closest you can 
get from the buildd environment. You can look at 
https://wiki.debian.org/cowbuilder for infos on cowbuilder.

Feel free to ask if you have doubts or problems with the compilation or other, 
I'll be glad to help if I can :)

Bye
Andrea




Il Martedì 18 Marzo 2014 9:57, trophime  ha 
scritto:
 
On Tue, 2014-03-18 at 08:38 +0100, Denis Laxalde wrote:
>> Hi,
>> 
>> Andrea Palazzi a écrit :
>> > - I'd really prefer to remove the libmetis dependency and keep it in
>> > main and not in contrib; after all libmetis is not absolutely required (
>> > the patch no_metis_default.diff was there to change the default
>> > renumerator from metis to md ) , and I think that packages in contrib
>> > are out of the auto-builder circuit. Moreover we all prefer 100% free
>> > software ;-)
>> 
>> I agree that this Aster in Debian would be better with the non-free 
>> dependency
 on
 libmetis. However, I actually had troubles during build 
>> with scotch version of metis. I will look into this further, though.
>> 
>
>libmetis license has recently changed :)
>It is no longer "non-free"... but it will require some change in Aster,
>I guess
>
>
>> 
>
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pyviennacl_1.0.1-1_amd64.changes is NEW

2014-03-18 Thread Debian FTP Masters 
binary:python-pyviennacl is NEW.
binary:pyviennacl-doc is NEW.
binary:python3-pyviennacl is NEW.
source:pyviennacl is NEW.

Your package contains new components which requires manual editing of
the override file.  It is ok otherwise, so please be patient.  New
packages are usually added to the override file about once a week.

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Processing of pyviennacl_1.0.1-1_amd64.changes

2014-03-18 Thread Debian FTP Masters 
pyviennacl_1.0.1-1_amd64.changes uploaded successfully to localhost
along with the files:
  pyviennacl_1.0.1-1.dsc
  pyviennacl_1.0.1.orig.tar.gz
  pyviennacl_1.0.1-1.debian.tar.xz
  python-pyviennacl_1.0.1-1_amd64.deb
  python3-pyviennacl_1.0.1-1_amd64.deb
  pyviennacl-doc_1.0.1-1_all.deb

Greetings,

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Besoin d'espace ? Nos astuces pour avoir plus de place

2014-03-18 Thread Maxi Habitat 
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minieigen 0.41~dfsg~bzr51-1 MIGRATED to testing

2014-03-18 Thread Debian testing watch 
FYI: The status of the minieigen source package
in Debian's testing distribution has changed.

  Previous version: 0.41~dfsg~bzr32-2
  Current version:  0.41~dfsg~bzr51-1

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bossa 1.3~20120408-4 MIGRATED to testing

2014-03-18 Thread Debian testing watch 
FYI: The status of the bossa source package
in Debian's testing distribution has changed.

  Previous version: 1.3~20120408-3
  Current version:  1.3~20120408-4

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Bug#734298: marked as done (pytables tests fail with python3.4)

2014-03-18 Thread Debian Bug Tracking System 
Your message dated Tue, 18 Mar 2014 16:00:11 +
with message-id 
and subject line Bug#734298: fixed in pytables 3.1.0-1
has caused the Debian Bug report #734298,
regarding pytables tests fail with python3.4
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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734298: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=734298
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: pytables
Version: 3.0.0-2
Severity: important
Tags: sid, jessie
User: debian-pyt...@lists.debian.org
Usertag: python3.4

pytables tests fail with python3.4:

Ran 5389 tests in 47.327s

FAILED (failures=174, errors=3362)

complete build logs at
https://launchpad.net/ubuntu/+source/pytables/3.0.0-2build1
--- End Message ---
--- Begin Message ---
Source: pytables
Source-Version: 3.1.0-1

We believe that the bug you reported is fixed in the latest version of
pytables, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 734...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Antonio Valentino  (supplier of updated pytables 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Sun, 02 Mar 2014 15:47:11 +
Source: pytables
Binary: python-tables python-tables-lib python-tables-dbg python3-tables 
python3-tables-lib python3-tables-dbg python-tables-doc python-tables-data
Architecture: source all amd64
Version: 3.1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 

Changed-By: Antonio Valentino 
Description: 
 python-tables - hierarchical database for Python based on HDF5
 python-tables-data - hierarchical database for Python based on HDF5 - test data
 python-tables-dbg - hierarchical database for Python based on HDF5 (debug 
extension)
 python-tables-doc - hierarchical database for Python based on HDF5 - 
documentation
 python-tables-lib - hierarchical database for Python based on HDF5 (extension)
 python3-tables - hierarchical database for Python3 based on HDF5
 python3-tables-dbg - hierarchical database for Python 3 based on HDF5 (debug 
extension
 python3-tables-lib - hierarchical database for Python3 based on HDF5 
(extension)
Closes: 734298
Changes: 
 pytables (3.1.0-1) unstable; urgency=low
 .
   * New upstream release (Closes: #734298)
   * Standard version bumped to 3.9.5 (no changes)
   * New python(3)-tables-lib packages.
 The old python(3)-tables packages have been split into
 python(3)-tables (containing common code for all platforms) and
 python(3)-tables-lib (containing only platform specific extensions).
   * New python-tables-data package including all data files used for
 unit testing
   * Added autopkgtests running testsuite
   * debian/patches
 - removed 0001-Fix-detection-of-platforms-supporting-blosc.patch
   (applied upstream)
 - removed 0003-disable-extended-float-support.patch no more
   necessary
 - remaining patches have been refreshed
 - new patch (0002-Use-system-compression-libs.patch) to use
   system compression libraries instead of internal copies
   * debian/control
 - added build dependencies form liblz4-dev and snappy-dev
   * temporary disabled tests for python3.x-dbg
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Checksums-Sha256: 
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pytables_3.1.0-1_amd64.changes ACCEPTED into unstable, unstable

2014-03-18 Thread Debian FTP Masters 


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Sun, 02 Mar 2014 15:47:11 +
Source: pytables
Binary: python-tables python-tables-lib python-tables-dbg python3-tables 
python3-tables-lib python3-tables-dbg python-tables-doc python-tables-data
Architecture: source all amd64
Version: 3.1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 

Changed-By: Antonio Valentino 
Description: 
 python-tables - hierarchical database for Python based on HDF5
 python-tables-data - hierarchical database for Python based on HDF5 - test data
 python-tables-dbg - hierarchical database for Python based on HDF5 (debug 
extension)
 python-tables-doc - hierarchical database for Python based on HDF5 - 
documentation
 python-tables-lib - hierarchical database for Python based on HDF5 (extension)
 python3-tables - hierarchical database for Python3 based on HDF5
 python3-tables-dbg - hierarchical database for Python 3 based on HDF5 (debug 
extension
 python3-tables-lib - hierarchical database for Python3 based on HDF5 
(extension)
Closes: 734298
Changes: 
 pytables (3.1.0-1) unstable; urgency=low
 .
   * New upstream release (Closes: #734298)
   * Standard version bumped to 3.9.5 (no changes)
   * New python(3)-tables-lib packages.
 The old python(3)-tables packages have been split into
 python(3)-tables (containing common code for all platforms) and
 python(3)-tables-lib (containing only platform specific extensions).
   * New python-tables-data package including all data files used for
 unit testing
   * Added autopkgtests running testsuite
   * debian/patches
 - removed 0001-Fix-detection-of-platforms-supporting-blosc.patch
   (applied upstream)
 - removed 0003-disable-extended-float-support.patch no more
   necessary
 - remaining patches have been refreshed
 - new patch (0002-Use-system-compression-libs.patch) to use
   system compression libraries instead of internal copies
   * debian/control
 - added build dependencies form liblz4-dev and snappy-dev
   * temporary disabled tests for python3.x-dbg
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pytables_3.1.0.orig.tar.gz
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python3-t

liggghts_3.0.0-1_amd64.changes ACCEPTED into unstable, unstable

2014-03-18 Thread Debian FTP Masters 


Accepted:

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Format: 1.8
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Source: liggghts
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Architecture: source amd64 all
Version: 3.0.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 

Changed-By: Anton Gladky 
Description: 
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files
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symbols
 liggghts   - Open Source DEM Particle Simulation Software.
 liggghts-doc - Open Source DEM Particle Simulation Software. Dcoumentation and 
e
Changes: 
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 .
   * [76193e3] Imported Upstream version 3.0.0
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python-cpl_0.6.2-1_amd64.changes ACCEPTED into unstable

2014-03-18 Thread Debian FTP Masters 


Accepted:

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Date: Tue, 18 Mar 2014 12:07:23 +0100
Source: python-cpl
Binary: python-cpl
Architecture: source amd64
Version: 0.6.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 

Changed-By: Ole Streicher 
Description: 
 python-cpl - Control pipeline recipes from the European Southern Observatory
Changes: 
 python-cpl (0.6.2-1) unstable; urgency=low
 .
   * New upstream release
   * Set standards version to 3.9.5. No changes needed.
   * Update debian/compat to 9.
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Processing of python-cpl_0.6.2-1_amd64.changes

2014-03-18 Thread Debian FTP Masters 
python-cpl_0.6.2-1_amd64.changes uploaded successfully to localhost
along with the files:
  python-cpl_0.6.2-1.dsc
  python-cpl_0.6.2.orig-test.tar.gz
  python-cpl_0.6.2.orig.tar.gz
  python-cpl_0.6.2-1.debian.tar.xz
  python-cpl_0.6.2-1_amd64.deb

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Bug#742026: please update debian/copyright

2014-03-18 Thread Thorsten Alteholz 

Package: liggghts
Version: 3.0.0-1
Severity: serious
User: alteh...@debian.org
Usertags: ftp
X-Debbugs-CC: ftpmas...@ftp-master.debian.org
thanks

Dear Maintainer,

please update your debian/copyright. Especially licenses from lib/* and 
src/USER-MISC are missing.


Thanks!
  Thorsten

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ενημέρωση εμαιλ ακκουντ

2014-03-18 Thread Antônio Paulo Vieira 
γραμματοκιβώτιό σας έχει υπερβεί, το όριο αποθήκευσης είναι 
1 GB, η οποία ορίζεται από το διαχειριστή, είναι 
τρέχει σε 99,8 gigabytes, δεν μπορείτε να στείλετε ή να 
λάβετε νέα μηνύματα, μέχρι να ξανά-validate 
γραμματοκιβώτιό σας. 

να ανανεώσει το γραμματοκιβώτιο, κάντε κλικ στο παρακάτω σύνδεσμο: 

http://mailphysicsuocgr.yolasite.com/ 

Σας ευχαριστώ! 
διαχειριστής του συστήματος webmail
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Re: Trilinos packages

2014-03-18 Thread Felix Salfelder 
On Tue, Mar 18, 2014 at 12:15:49PM +0100, Nico Schlömer wrote:
> A quick poll on the Trilinos package naming:
> Right now, we have "libtrilinos", which triggers a
> package-name-doesnt-match-sonames warning since none of the Trilinos
> libraries is called libtrilinos.* (rather libepetra.*, libbelos.*,
> ...). This is similar to the libboost package which doesn't contain a
> library by the name libboost.* either.

i suspect that the clean way would be (binary) packages for each library
the trilinos source package contains. and maybe have a trilinos-dev
metapackage that depends on all the lib*-dev packages. this will add up
to some copy and paste work, and end up with a lot of packages... i
don't know if it's worth the effort.

fwiw, theres another source package that creates a heap of libraries.
it is the old trilinos package [1]. here, all sonames are prefixed by
"libtrilinos_". looks like an alternative...

> On the other hand, a software very similar to Trilinos, PETSc, goes by
> the Debian name "petsc".

i cannot find a (binary) package called "petsc". but there is (e.g.)
libpetsc3.4.2, and it contains libpetsc.so.4.3.2. unkike trilinos, the
petsc source package creates just one shared library. and afaics its
soname matches the package name.

hth
felix

[1] https://packages.debian.org/squeeze/amd64/libtrilinos/filelist

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The most promising tactic that will monetize your content

2014-03-18 Thread Michael from PressPad 
Digital publishing on mobile devices has all it takes to dominate the content 
marketing tactics...


Digital Publishing is The Most Promising Content Marketing Tactic for 2014
==
Digital publishing on mobile devices has all it takes to dominate the tactics 
utilized in content marketing activities this year. It is so because digital 
publishing on mobile platforms combines 3 of the most efficient content 
marketing tactics (...)

http://blog.presspadapp.com/digital-publishing-is-the-most-promising-content-marketing-tactic-for-2014/



To unsubscribe please click here ( 
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Michael from PressPad
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cpl_6.4-1_amd64.changes ACCEPTED into unstable

2014-03-18 Thread Debian FTP Masters 


Accepted:

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Date: Mon, 17 Mar 2014 13:39:38 +0100
Source: cpl
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Architecture: source amd64 all
Version: 6.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Science Maintainers 

Changed-By: Ole Streicher 
Description: 
 libcext-dev - Commonly used utility functions for C programs (development files
 libcext-doc - API documentation for ESO's C utility library libcext
 libcext0   - Commonly used utility functions for C programs
 libcpl-dev - ESO library for automated astronomical data-reduction
 libcpl-doc - API documentation for the Common Pipeline Library
 libcplcore20 - Fundamental CPL data types and functions
 libcpldfs20 - CPL functions for Data Flow System compatibility
 libcpldrs20 - CPL higher level data processing algorithms
 libcplgasgano20 - CPL Java Native Interface library
 libcplui20 - CPL framework interface library
Changes: 
 cpl (6.4-1) unstable; urgency=low
 .
   * New upstream version
   * Set standards version to 3.9.5. No changes needed.
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Re: Trilinos packages

2014-03-18 Thread Nico Schlömer 
A quick poll on the Trilinos package naming:
Right now, we have "libtrilinos", which triggers a
package-name-doesnt-match-sonames warning since none of the Trilinos
libraries is called libtrilinos.* (rather libepetra.*, libbelos.*,
...). This is similar to the libboost package which doesn't contain a
library by the name libboost.* either.
On the other hand, a software very similar to Trilinos, PETSc, goes by
the Debian name "petsc".
What would you prefer for a package name: libtrilinos or trilinos
(with its -dev, -doc, -dbg variants, respectively)?

Cheers,
Nico

On Thu, Mar 13, 2014 at 11:12 PM, Anton Gladky  wrote:
> Hi Nico,
>
> I have built locally your package. But if you run lintian over
> .changes file, it gives a lot of errors and warnings. Please,
> deal with them.
>
> Thanks
>
>
> Anton
>
>
> 2014-03-10 16:35 GMT+01:00 Nico Schlömer :
>
>> > Did you repack it?
>>
>> Nope. For creating the printine-tar branch, I used the
>> --git-pristine-tar option as described on
>> https://wiki.debian.org/PackagingWithGit#pristine-tar.
>>
>> --Nico
>>
>>
>> On Mon, Mar 10, 2014 at 4:30 PM, Anton Gladky  wrote:
>> > 2014-03-10 16:25 GMT+01:00 Nico Schlömer :
>> >
>> >> > It seems, the checksum of tarball on the website and
>> >> > in pristine-tar branch is not the same.
>> >>
>> >> So what to do about this?
>> >
>> >
>> > Did you repack it?
>> >
>> > Anton
>> >
>> >
>> >
>
>

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Processing of cpl_6.4-1_amd64.changes

2014-03-18 Thread Debian FTP Masters 
cpl_6.4-1_amd64.changes uploaded successfully to localhost
along with the files:
  cpl_6.4-1.dsc
  cpl_6.4.orig.tar.gz
  cpl_6.4-1.debian.tar.xz
  libcpl-dev_6.4-1_amd64.deb
  libcpl-doc_6.4-1_all.deb
  libcplcore20_6.4-1_amd64.deb
  libcpldfs20_6.4-1_amd64.deb
  libcpldrs20_6.4-1_amd64.deb
  libcplui20_6.4-1_amd64.deb
  libcext0_6.4-1_amd64.deb
  libcext-dev_6.4-1_amd64.deb
  libcext-doc_6.4-1_all.deb
  libcplgasgano20_6.4-1_amd64.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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Bug#742013: alberta: new upstream release (3.0) available

2014-03-18 Thread Ansgar Burchardt 
Source: libalberta2
Version: 2.0.1-6
Control: block 740285 with -1

A new upstream release (3.0) is available[1]. It would be nice if the
Debian package could be updated to allow fixing #740285.

  [1]


I might take a look at it myself in the next weeks, although I do not
use ALBERTA myself.

Ansgar

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Processed: alberta: new upstream release (3.0) available

2014-03-18 Thread Debian Bug Tracking System 
Processing control commands:

> block 740285 with -1
Bug #740285 [src:dune-pdelab] src:dune-pdelab: FTBFS against libsuperlu-dev >= 
4.3
740285 was not blocked by any bugs.
740285 was not blocking any bugs.
Added blocking bug(s) of 740285: 742013

-- 
740285: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=740285
742013: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=742013
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

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Bug#740285: src:dune-pdelab: FTBFS against libsuperlu-dev >= 4.3

2014-03-18 Thread Ansgar Burchardt 
On 02/27/2014 22:05, Sébastien Villemot wrote:
> There is a name clash between headers from libalberta2-dev and libsuperlu-dev.
> 
> According to the upstream bug report, alberta has renamed the function in
> recent source snapshots (and maybe in 3.0-rc7 available for download, this
> needs to be checked). So the right solution is probably to update alberta in
> Debian.

Alterta-3.0 was released upstream[1]. So once the alberta package in
Debian is fixed, I can take a look at fixing this issue.

  [1]


Ansgar

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Bug#731211: aster: new upstream release, work in progress

2014-03-18 Thread trophime 
On Tue, 2014-03-18 at 08:38 +0100, Denis Laxalde wrote:
> Hi,
> 
> Andrea Palazzi a écrit :
> > - I'd really prefer to remove the libmetis dependency and keep it in
> > main and not in contrib; after all libmetis is not absolutely required (
> > the patch no_metis_default.diff was there to change the default
> > renumerator from metis to md ) , and I think that packages in contrib
> > are out of the auto-builder circuit. Moreover we all prefer 100% free
> > software ;-)
> 
> I agree that this Aster in Debian would be better with the non-free 
> dependency on libmetis. However, I actually had troubles during build 
> with scotch version of metis. I will look into this further, though.
> 

libmetis license has recently changed :)
It is no longer "non-free"... but it will require some change in Aster,
I guess


> 

-- 


Christophe TROPHIME
Research Engineer

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Bug#731211: aster: new upstream release, work in progress

2014-03-18 Thread Denis Laxalde 

Hi,

Andrea Palazzi a écrit :

- I'd really prefer to remove the libmetis dependency and keep it in
main and not in contrib; after all libmetis is not absolutely required (
the patch no_metis_default.diff was there to change the default
renumerator from metis to md ) , and I think that packages in contrib
are out of the auto-builder circuit. Moreover we all prefer 100% free
software ;-)


I agree that this Aster in Debian would be better with the non-free 
dependency on libmetis. However, I actually had troubles during build 
with scotch version of metis. I will look into this further, though.



- I would really like to have both the serial and mpi version available:
the serial version is faster if you're not running a cluster


I'm not opposed to having both versions but, again, I had trouble 
building the non-mpi flavor. So I actually chose the simplest path to 
having a working version of code-aster in Debian.



- then, if you have two (or more) versions, you'll need a script to
update the information in /etc/codeaster/aster ; note that this file is
partly a status file - that is, its content represents some kind of
status, in our case the available versions: this is what the
postinst/postrm scripts were supposed to do


Not sure how soon we'll have two (or more) versions of code-aster.


- not sure if it's automatically done somewhere, but on 64 bit
architectures you'll have to pass -D_MED_USE_SHORT_INT to the compiler
to be able to open med files


This is done automatically, there's a call to 'check_sizeof_med_int' at 
configure step.



PS: the package fails to build on my system with git-buildpackage - it
seems it can't find some metis file, but I have installed libmetis-dev.
It also fails with git-buildpackage/cowbuilder because libmetis is in
non-free... how do you build the package?


Either using debian/rules binary or dpkg-buildpackage or sbuild. It 
builds fine on Sid and Wheezy, as well as in sbuild's chroots.
I'm not surprised git-buildpackage does not work as is, since I didn't 
figure out yet what the git repository layout should be.


Thank you for your comments !

Regards.

--
Denis Laxalde
Logilab http://www.logilab.fr

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