Amanda Nield

2014-07-30 Thread Anisa Keeratiworanan
I Amanda Nield winner of 6Million Pounds am Helping my dad from his Alzheimer's 
care  and also want to improving life of other given out 400k Pounds to four 
lucky people each. View My page

http://www.mirror.co.uk/news/real-life-stories/lottery-winners-fulfill-dream-being-3068457

For more details contact: comeforward2...@gmx.co.uk

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Bug#756471: flann: Fix cmake HDF5 detection

2014-07-30 Thread Gilles Filippini
Source: flann
Version: 1.8.4-4
Severity: normal
Tags: patch
User: p...@debian.org

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Hi,

Please find attached a patch proposal to fix cmake HDF5 detection when
it isn't installed in the standard path.

This patch fixes a FTBFS against hdf5 1.8.13 currently in experimental.

Thanks in advance,

_g.

- -- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

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diff -Nru flann-1.8.4/debian/changelog flann-1.8.4/debian/changelog
--- flann-1.8.4/debian/changelog	2014-06-17 10:58:18.0 +0200
+++ flann-1.8.4/debian/changelog	2014-07-24 19:46:48.0 +0200
@@ -1,3 +1,11 @@
+flann (1.8.4-4.1) unstable; urgency=low
+
+  * Non-maintainer upload.
+  * New patch fix-cmake-hdf5.patch to support hdf5 1.8.13 new packaging
+layout.
+
+ -- Gilles Filippini p...@debian.org  Thu, 24 Jul 2014 19:46:48 +0200
+
 flann (1.8.4-4) unstable; urgency=low
 
   * Bump Std-Vers to 3.9.5, no changes needed. Run w-a-s for cleanup.
diff -Nru flann-1.8.4/debian/patches/fix-cmake-hdf5.patch flann-1.8.4/debian/patches/fix-cmake-hdf5.patch
--- flann-1.8.4/debian/patches/fix-cmake-hdf5.patch	1970-01-01 01:00:00.0 +0100
+++ flann-1.8.4/debian/patches/fix-cmake-hdf5.patch	2014-07-24 19:52:42.0 +0200
@@ -0,0 +1,44 @@
+Index: flann-1.8.4/CMakeLists.txt
+===
+--- flann-1.8.4.orig/CMakeLists.txt	2014-07-24 16:52:23.0 +0200
 flann-1.8.4/CMakeLists.txt	2014-07-24 19:52:39.193104490 +0200
+@@ -71,11 +71,11 @@
+ set(BUILD_PYTHON_BINDINGS OFF)
+ endif()
+ 
+-find_hdf5()
++find_package(HDF5)
+ if (NOT HDF5_FOUND)
+ 	message(WARNING hdf5 library not found, some tests will not be run)
+ else()
+-include_directories(${HDF5_INCLUDE_DIR})
++include_directories(${HDF5_INCLUDE_DIRS})
+ endif()
+ 
+ if (USE_MPI OR HDF5_IS_PARALLEL)
+Index: flann-1.8.4/examples/CMakeLists.txt
+===
+--- flann-1.8.4.orig/examples/CMakeLists.txt	2013-01-15 22:38:32.0 +0100
 flann-1.8.4/examples/CMakeLists.txt	2014-07-24 19:52:04.463947527 +0200
+@@ -11,7 +11,7 @@
+ endif()
+ 
+ if (HDF5_FOUND)
+-include_directories(${HDF5_INCLUDE_DIR})
++include_directories(${HDF5_INCLUDE_DIRS})
+ 
+ add_executable(flann_example_cpp flann_example.cpp)
+ target_link_libraries(flann_example_cpp ${HDF5_LIBRARIES})
+Index: flann-1.8.4/test/CMakeLists.txt
+===
+--- flann-1.8.4.orig/test/CMakeLists.txt	2013-01-15 22:38:32.0 +0100
 flann-1.8.4/test/CMakeLists.txt	2014-07-24 19:52:12.668222600 +0200
+@@ -20,7 +20,7 @@
+ endif()
+ 
+ if (GTEST_FOUND AND HDF5_FOUND)
+-	include_directories(${HDF5_INCLUDE_DIR})
++	include_directories(${HDF5_INCLUDE_DIRS})
+ 
+ set(TEST_LIBRARIES ${HDF5_LIBRARIES})
+ if (HDF5_IS_PARALLEL)
diff -Nru flann-1.8.4/debian/patches/series flann-1.8.4/debian/patches/series
--- flann-1.8.4/debian/patches/series	2013-01-19 19:23:17.0 +0100
+++ flann-1.8.4/debian/patches/series	2014-07-24 19:45:59.0 +0200
@@ -1,2 +1,3 @@
 remove_tests.patch
 fixmultiarchlibinstall.patch
+fix-cmake-hdf5.patch
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Bug#756472: gmsh: fix cmake HDF5 detection

2014-07-30 Thread Gilles Filippini
Source: gmsh
Version: 2.8.4+dfsg-1
Severity: normal
Tags: patch
User: p...@debian.org

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Hi,

Please find attached a patch proposal to fix cmake HDF5 detection when
it isn't installed in the standard path.

This patch fixes a FTBFS against hdf5 1.8.13 currently in experimental.

Thanks in advance,

_g.

- -- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

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diff -Nru gmsh-2.8.4+dfsg/debian/changelog gmsh-2.8.4+dfsg/debian/changelog
--- gmsh-2.8.4+dfsg/debian/changelog	2014-02-11 07:42:58.0 +0100
+++ gmsh-2.8.4+dfsg/debian/changelog	2014-07-25 00:43:50.0 +0200
@@ -1,3 +1,11 @@
+gmsh (2.8.4+dfsg-1.1) unstable; urgency=low
+
+  * Non-maintainer upload.
+  * New patch fix-cmake-hdf5.patch to support hdf5 1.8.13 new packaging
+layout.
+
+ -- Gilles Filippini p...@debian.org  Fri, 25 Jul 2014 00:43:50 +0200
+
 gmsh (2.8.4+dfsg-1) unstable; urgency=medium
 
   * [09d4b69] Imported Upstream version 2.8.4+dfsg
diff -Nru gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch
--- gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch	1970-01-01 01:00:00.0 +0100
+++ gmsh-2.8.4+dfsg/debian/patches/fix-cmake-hdf5.patch	2014-07-25 12:00:18.0 +0200
@@ -0,0 +1,29 @@
+Index: gmsh-2.8.4+dfsg/CMakeLists.txt
+===
+--- gmsh-2.8.4+dfsg.orig/CMakeLists.txt	2014-07-25 00:43:13.0 +0200
 gmsh-2.8.4+dfsg/CMakeLists.txt	2014-07-25 12:00:12.512894965 +0200
+@@ -779,8 +779,10 @@
+ endif(ENABLE_FOURIER_MODEL)
+ 
+ if(ENABLE_MED OR ENABLE_CGNS)
+-  find_library(HDF5_LIB hdf5)
+-  if(HDF5_LIB)
++  find_package(HDF5)
++  if(HDF5_FOUND)
++set(HDF5_LIB ${HDF5_C_LIBRARIES})
++list(APPEND EXTERNAL_INCLUDES ${HDF5_INCLUDE_DIRS})
+ if(ENABLE_MED)
+   find_library(MED_LIB med)
+   if(MED_LIB)
+@@ -811,9 +813,9 @@
+ endif(ZLIB_FOUND)
+   endif(NOT HAVE_LIBZ)
+ endif(MED_LIB OR CGNS_LIB)
+-  else(HDF5_LIB)
++  else(HDF5_FOUND)
+ message(STATUS HDF5 not found)
+-  endif(HDF5_LIB)
++  endif(HDF5_FOUND)
+ endif(ENABLE_MED OR ENABLE_CGNS)
+ 
+ if(HAVE_SOLVER)
diff -Nru gmsh-2.8.4+dfsg/debian/patches/series gmsh-2.8.4+dfsg/debian/patches/series
--- gmsh-2.8.4+dfsg/debian/patches/series	2014-02-10 21:11:17.0 +0100
+++ gmsh-2.8.4+dfsg/debian/patches/series	2014-07-25 00:44:39.0 +0200
@@ -9,3 +9,4 @@
 fix_script_header.patch
 fix_java_wrapper_compilation.patch
 enable_tetgen.patch
+fix-cmake-hdf5.patch
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Bug#756435: feel++: add explicit build dependency on libhdf5-mpi-dev

2014-07-30 Thread Christophe Prud'homme
Hello

thanks a lot for the patch. This will be fixed ASAP.

Best regards
C.


On Tue, Jul 29, 2014 at 10:10 PM, Gilles Filippini p...@debian.org wrote:

 Source: feel++
 Version: 1:0.98.0-final-1
 Severity: normal
 Tags: patch

 -BEGIN PGP SIGNED MESSAGE-
 Hash: SHA256

 Hi,

 The source package feel++ indirectly build-depends on libhdf5-mpi-dev
 through libslepc3.4.2-dev. But after bug #755180 is fixed,
 libslepc3.4.2-dev won't depend on libhdf5-mpi-dev anymore. Then if
 feel++ needs HDF5 support it should explicitly build depend on
 libhdf5-mpi-dev.

 Patch attached.

 Thanks,

 _g.

 - -- System Information:
 Debian Release: jessie/sid
   APT prefers testing
   APT policy: (500, 'testing'), (1, 'experimental')
 Architecture: i386 (i686)

 Kernel: Linux 3.14-1-486
 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
 Shell: /bin/sh linked to /bin/dash

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Bug#756480: double-conversion: the package should create and install the *.cmake files

2014-07-30 Thread Gert Wollny

Source: double-conversion
Version: Package should generate and install *.cmake files
Severity: normal

Dear Maintainer,

the package is prepared to provide various *.cmake files that can be used by
third party libraries using cmake to find the required information about the
location of library files etc. E.g. the Insighttoolkit requires these files.

As far as I can see the package supports two build systems: cmake and scons,
and to build the package scons is used which doesn't create the *.cmake files.
The cmake based build system would create these files but doesn't create and
run the tests.
(One should probably ask upstream to completely move to cmake).

Many thanks,
Gert



-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (990, 'testing'), (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.14-1-amd64 (SMP w/6 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Shell: /bin/sh linked to /bin/dash



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Processed: itk needs double-conversion's cmake files.

2014-07-30 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

 block 733629  by 756480
Bug #733629 [insighttoolkit4] Convenient lib: double-conversion
733629 was not blocked by any bugs.
733629 was not blocking any bugs.
Added blocking bug(s) of 733629: 756480
 thanks
Stopping processing here.

Please contact me if you need assistance.
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Contact ow...@bugs.debian.org with problems

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Comments regarding r-cran-spdep_0.5-74-1_amd64.changes

2014-07-30 Thread Thorsten Alteholz
Hi Andreas,

according to spdep/inst/README parts of src/soigraph.c are taken from 
a publication of Camebridge University Press. Can you please confirm 
that the license is really GPLv2+?

spdep/R/bptest.sarlm.R seems to be just GPLv2 and not GPLv2+, doesn't it?

 Thorsten



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Processing of ssm_1.3-2_i386.changes

2014-07-30 Thread Debian FTP Masters
ssm_1.3-2_i386.changes uploaded successfully to localhost
along with the files:
  ssm_1.3-2.dsc
  ssm_1.3-2.debian.tar.xz
  libssm-dev_1.3-2_i386.deb
  libssm1_1.3-2_i386.deb
  libssm1-dbg_1.3-2_i386.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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Processing of libccp4_6.4.5-2_i386.changes

2014-07-30 Thread Debian FTP Masters
libccp4_6.4.5-2_i386.changes uploaded successfully to localhost
along with the files:
  libccp4_6.4.5-2.dsc
  libccp4_6.4.5-2.debian.tar.xz
  libccp4c0_6.4.5-2_i386.deb
  libccp4-dev_6.4.5-2_i386.deb
  libccp4c0-dbg_6.4.5-2_i386.deb
  libccp4f0_6.4.5-2_i386.deb
  libccp4f0-dbg_6.4.5-2_i386.deb
  libccp4-data_6.4.5-2_all.deb

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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libccp4_6.4.5-2_i386.changes ACCEPTED into unstable

2014-07-30 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Wed, 30 Jul 2014 14:31:25 +0200
Source: libccp4
Binary: libccp4c0 libccp4-dev libccp4c0-dbg libccp4f0 libccp4f0-dbg libccp4-data
Architecture: source i386 all
Version: 6.4.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description: 
 libccp4-data - CCP4 core functionality - common files
 libccp4-dev - CCP4 core functionality - development files
 libccp4c0  - CCP4 core functionality - C runtime
 libccp4c0-dbg - CCP4 core functionality - debug symbols
 libccp4f0  - CCP4 core functionality - fortran runtime
 libccp4f0-dbg - CCP4 core functionality - debug symbols
Changes: 
 libccp4 (6.4.5-2) unstable; urgency=medium
 .
   * use autoreconf to fix compilation on newer architectures
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libccp4f0-dbg_6.4.5-2_i386.deb
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libccp4-data_6.4.5-2_all.deb

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ssm_1.3-2_i386.changes ACCEPTED into unstable

2014-07-30 Thread Debian FTP Masters


Accepted:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.8
Date: Wed, 30 Jul 2014 14:26:31 +0200
Source: ssm
Binary: libssm-dev libssm1 libssm1-dbg
Architecture: source i386
Version: 1.3-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
debian-science-maintainers@lists.alioth.debian.org
Changed-By: Picca Frédéric-Emmanuel pi...@debian.org
Description: 
 libssm-dev - macromolecular superposition library - development files
 libssm1- macromolecular superposition library - runtime
 libssm1-dbg - macromolecular superposition library - debug symbols
Closes: 744663
Changes: 
 ssm (1.3-2) unstable; urgency=medium
 .
   * use autoreconf (Closes: #744663)
Checksums-Sha1: 
 16bbe57ad5e3a8f89d6b64fb6c2cb4adb6d7f6c6 1346 ssm_1.3-2.dsc
 5ce37f694bd724311e156dd3b41c455af0d455db 6964 ssm_1.3-2.debian.tar.xz
 a5f917348ff827846e2ed06aa89a54177195839a 13502 libssm-dev_1.3-2_i386.deb
 be80c5fea65c1b3968a961ae4a4ed8e131fa13f5 81938 libssm1_1.3-2_i386.deb
 87ec7e6106c58a8226dbe652c1c3a92605ce2fb6 138138 libssm1-dbg_1.3-2_i386.deb
Checksums-Sha256: 
 6fa1297d22addc6cd35d8c47dbdf3da2cc4af0942494c568d36c1929f23724fd 1346 
ssm_1.3-2.dsc
 e6b987765304a143c35955596263b66079d61f148f187828b8794b085e780b58 6964 
ssm_1.3-2.debian.tar.xz
 030ce7aae7d6e50ba1675f6336d07e88ee5f16626371da9def5cc9a9ba31d4d4 13502 
libssm-dev_1.3-2_i386.deb
 c40919d9d10a770d43f2ee1ea04da24b62daa7cb54b1b5afc39bbe7ea2da9cba 81938 
libssm1_1.3-2_i386.deb
 ce521975e8b8a7e5bcc9fdbf80e02651897c412aa5ed2a39273949319d7d23fc 138138 
libssm1-dbg_1.3-2_i386.deb
Files: 
 f9bf30a35211b801207c3a5d49b891f7 1346 science extra ssm_1.3-2.dsc
 f6919eb017493255d51b1c269a8d68db 6964 science extra ssm_1.3-2.debian.tar.xz
 129cb227f4e2bc009734e1b8a8cc59ba 13502 libdevel extra libssm-dev_1.3-2_i386.deb
 3b86bbfe13b3f4b284ee50adc476b824 81938 libs extra libssm1_1.3-2_i386.deb
 69cc97cc16dd7eb49ee0831a0564b132 138138 debug extra libssm1-dbg_1.3-2_i386.deb

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Bug#744663: marked as done (ssm: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4)

2014-07-30 Thread Debian Bug Tracking System
Your message dated Wed, 30 Jul 2014 12:49:24 +
with message-id e1xctjs-0003hj...@franck.debian.org
and subject line Bug#744663: fixed in ssm 1.3-2
has caused the Debian Bug report #744663,
regarding ssm: run dh-autoreconf to update config.{sub,guess} and 
{libtool,aclocal}.m4
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
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Contact ow...@bugs.debian.org with problems
---BeginMessage---
Package: src:ssm
Version: 1.1-0
User: debian-de...@lists.debian.org
Usertags: autoreconf

The package fails to build on ppc64el (powerpc64le-linux-gnu), because
the config.{guess,sub} files are out of date, and are not updated during
the build.  If possible, please do not update these files directly,
but build-depend on autotools-dev instead, and use the tools provided
by autotools-dev to update these files.

  - For dh, call dh --with autoreconf.

  - For cdbs based build systems, include
/usr/share/cdbs/1/rules/autoreconf.mk

  - For other rules files, call dh_autoreconf before calling
configure (in the build or configure target), and call
dh_autoreconf_clean before dh_clean in the clean target.

For combining autoreconf and autotools_dev, see bug #698765.

After the build on any architecture, and before a clean, a grep for
powerpc64le in the configure, aclocal.m4 and/or libtool.m4 file(s)
should print some lines. It is not enough to just update the
config.guess and config.sub files.

The full build log can be found at:
http://people.debian.org/~doko/logs/ppc64el-20140414/buildlog_ubuntu-trusty-ppc64el.ssm_1.1-0ubuntu1_FAILEDTOBUILD.txt
The last lines of the build log are at the end of this report.

Please note that these builds were done in an Ubuntu development,
environment there may be a few false positives in these bug reports.

See https://wiki.debian.org/qa.debian.org/FTBFS for a guide how to
address these.

[...]
libtool: install: /usr/bin/install -c .libs/libssm.a 
/build/buildd/ssm-1.1/debian/tmp//usr/lib/libssm.a
libtool: install: chmod 644 /build/buildd/ssm-1.1/debian/tmp//usr/lib/libssm.a
libtool: install: ranlib /build/buildd/ssm-1.1/debian/tmp//usr/lib/libssm.a
libtool: install: warning: remember to run `libtool --finish /usr/lib'
test -z /usr/include/ssm || /bin/mkdir -p 
/build/buildd/ssm-1.1/debian/tmp//usr/include/ssm
 /usr/bin/install -c -m 644 ss_csia.h ss_graph.h ssm_align.h ssm_superpose.h 
ss_vxedge.h '/build/buildd/ssm-1.1/debian/tmp//usr/include/ssm'
make[3]: Leaving directory `/build/buildd/ssm-1.1/src'
make[2]: Leaving directory `/build/buildd/ssm-1.1/src'
Making install in test
make[2]: Entering directory `/build/buildd/ssm-1.1/test'
make[3]: Entering directory `/build/buildd/ssm-1.1/test'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/ssm-1.1/test'
make[2]: Leaving directory `/build/buildd/ssm-1.1/test'
make[2]: Entering directory `/build/buildd/ssm-1.1'
make[3]: Entering directory `/build/buildd/ssm-1.1'
make[3]: Nothing to be done for `install-exec-am'.
test -z /usr/lib/pkgconfig || /bin/mkdir -p 
/build/buildd/ssm-1.1/debian/tmp//usr/lib/pkgconfig
 /usr/bin/install -c -m 644 ssm.pc 
'/build/buildd/ssm-1.1/debian/tmp//usr/lib/pkgconfig'
make[3]: Leaving directory `/build/buildd/ssm-1.1'
make[2]: Leaving directory `/build/buildd/ssm-1.1'
make[1]: Leaving directory `/build/buildd/ssm-1.1'
touch debian/stamp-makefile-install
Adding cdbs dependencies to debian/libssm-dev.substvars
dh_installdirs -plibssm-dev 
Adding cdbs dependencies to debian/libssm0.substvars
dh_installdirs -plibssm0 
dh_installdocs -plibssm-dev ./README ./AUTHORS 
dh_installexamples -plibssm-dev 
dh_installman -plibssm-dev  
dh_installinfo -plibssm-dev  
dh_installmenu -plibssm-dev 
dh_installcron -plibssm-dev 
dh_installinit -plibssm-dev  
dh_installdebconf -plibssm-dev 
dh_installemacsen -plibssm-dev   
dh_installcatalogs -plibssm-dev 
dh_installpam -plibssm-dev 
dh_installlogrotate -plibssm-dev 
dh_installlogcheck -plibssm-dev 
dh_installchangelogs -plibssm-dev  ChangeLog 
dh_installudev -plibssm-dev 
dh_lintian -plibssm-dev 
dh_bugfiles -plibssm-dev 
dh_install -plibssm-dev  
cp: cannot stat './debian/tmp/usr/lib/libssm.so': No such file or directory
dh_install: cp -a ./debian/tmp/usr/lib/libssm.so debian/libssm-dev//usr/lib/ 
returned exit code 1
make: *** [binary-install/libssm-dev] Error 2
dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary-arch gave error 
exit status 2
---End Message---
---BeginMessage---
Source: ssm

Comments from ftpmaster regarding spdep Debian package

2014-07-30 Thread Andreas Tille
Hi Roger,

I tried to package spdep for Debian on behalf of the Debian Science team.
The Debian ftpmaster had some issues before he will accept the package.
Could you please clarify the points below.

Thanks a lot and also thanks for providing spdep as free software

  Andreas.

- Forwarded message from Thorsten Alteholz 
ftpmas...@ftp-master.debian.org -

Date: Wed, 30 Jul 2014 11:51:55 +
From: Thorsten Alteholz ftpmas...@ftp-master.debian.org
To: Debian Science Team debian-science-maintainers@lists.alioth.debian.org, 
Andreas Tille ti...@debian.org
Cc: Debian FTP Masters ftpmas...@ftp-master.debian.org
Subject: Comments regarding r-cran-spdep_0.5-74-1_amd64.changes

Hi Andreas,

according to spdep/inst/README parts of src/soigraph.c are taken from 
a publication of Camebridge University Press. Can you please confirm 
that the license is really GPLv2+?

spdep/R/bptest.sarlm.R seems to be just GPLv2 and not GPLv2+, doesn't it?

 Thorsten



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SKA-P 20 AÑOS ESTE 15 DE NOVIEMBRE

2014-07-30 Thread SKA-P EN COLOMBIA


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Re: Comments from ftpmaster regarding spdep Debian package

2014-07-30 Thread Roger Bivand

Hi Andreas,

On Wed, 30 Jul 2014, Andreas Tille wrote:


Hi Roger,

I tried to package spdep for Debian on behalf of the Debian Science team.
The Debian ftpmaster had some issues before he will accept the package.
Could you please clarify the points below.

Thanks a lot and also thanks for providing spdep as free software

 Andreas.

- Forwarded message from Thorsten Alteholz 
ftpmas...@ftp-master.debian.org -

Date: Wed, 30 Jul 2014 11:51:55 +
From: Thorsten Alteholz ftpmas...@ftp-master.debian.org
To: Debian Science Team debian-science-maintainers@lists.alioth.debian.org, Andreas 
Tille ti...@debian.org
Cc: Debian FTP Masters ftpmas...@ftp-master.debian.org
Subject: Comments regarding r-cran-spdep_0.5-74-1_amd64.changes

Hi Andreas,

according to spdep/inst/README parts of src/soigraph.c are taken from
a publication of Camebridge University Press. Can you please confirm
that the license is really GPLv2+?



The code at:

http://cs.smith.edu/~orourke/books/ftp.html
http://cs.smith.edu/~orourke/CGCode/SecondEdition/Ccode2.tar.gz

includes arm/arm.c with the affected functions. This file has:

/*
This code is described in Computational Geometry in C (Second Edition),
Chapter 8.  It is not written to be comprehensible without the
explanation in that book.

Prints out one arm configuration to reach given target.
Assumes number of links = 3.
Input:
   nlinks   Number of links
   L1 L2 ... Ln Link lengths
   x0 y0target0
   x1 x2target1
   ...

Written by Joseph O'Rourke.
Last modified: December 1997
Questions to orou...@cs.smith.edu.

This code is Copyright 1998 by Joseph O'Rourke.  It may be freely
redistributed in its entirety provided that this copyright notice is
not removed.

*/

The file src/soigraph.c has:

/* Copyright 2001 by Nicholas Lewin-Koh. 
* NOTE
* The subroutines TwoCirclesxx and SubVec are adapted for R and Double
* precision coordinates by Nicholas Lewin-Koh, from Computational
* Geometry in C, Joseph O'Rourke, Cambridge University Press
* (1998). Copyright for those subroutines remains his.
/

(slightly edited on R-forge to cite the arm/arm.c file)

which we would argue meets the requirements of the copyright holder. If 
you disagree, it may be possible to reproduce the functionality using 
another R package.



spdep/R/bptest.sarlm.R seems to be just GPLv2 and not GPLv2+, doesn't it?


From:

http://cran.r-project.org/web/packages/lmtest/index.html

lmtest now is GPL-2 | GPL-3; R source file in spdep updated.

Hope this helps,

Roger



Thorsten






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voice: +47 55 95 93 55; fax +47 55 95 91 00
e-mail: roger.biv...@nhh.no


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Re: Comments from ftpmaster regarding spdep Debian package

2014-07-30 Thread Andreas Tille
Hi Roger,

thanks for your very fast response.  I keep our ftpmaster in CC since he
finally needs to decide.  I attached a proposed diff for the
debian/copyright file.

On Wed, Jul 30, 2014 at 05:12:58PM +0200, Roger Bivand wrote:
 Hi Andreas,
 
 On Wed, 30 Jul 2014, Andreas Tille wrote:
 
 Hi Roger,
 
 I tried to package spdep for Debian on behalf of the Debian Science team.
 The Debian ftpmaster had some issues before he will accept the package.
 Could you please clarify the points below.
 
 Thanks a lot and also thanks for providing spdep as free software
 
  Andreas.
 
 - Forwarded message from Thorsten Alteholz 
 ftpmas...@ftp-master.debian.org -
 
 Date: Wed, 30 Jul 2014 11:51:55 +
 From: Thorsten Alteholz ftpmas...@ftp-master.debian.org
 To: Debian Science Team 
 debian-science-maintainers@lists.alioth.debian.org, Andreas Tille 
 ti...@debian.org
 Cc: Debian FTP Masters ftpmas...@ftp-master.debian.org
 Subject: Comments regarding r-cran-spdep_0.5-74-1_amd64.changes
 
 Hi Andreas,
 
 according to spdep/inst/README parts of src/soigraph.c are taken from
 a publication of Camebridge University Press. Can you please confirm
 that the license is really GPLv2+?
 
 
 The code at:
 
 http://cs.smith.edu/~orourke/books/ftp.html
 http://cs.smith.edu/~orourke/CGCode/SecondEdition/Ccode2.tar.gz
 
 includes arm/arm.c with the affected functions. This file has:
 
 /*
 This code is described in Computational Geometry in C (Second Edition),
 Chapter 8.  It is not written to be comprehensible without the
 explanation in that book.
 
 Prints out one arm configuration to reach given target.
 Assumes number of links = 3.
 Input:
nlinks   Number of links
L1 L2 ... Ln Link lengths
x0 y0target0
x1 x2target1
...
 
 Written by Joseph O'Rourke.
 Last modified: December 1997
 Questions to orou...@cs.smith.edu.
 
 This code is Copyright 1998 by Joseph O'Rourke.  It may be freely
 redistributed in its entirety provided that this copyright notice is
 not removed.
 
 */

I think this is fine so far.

 The file src/soigraph.c has:
 
 /* Copyright 2001 by Nicholas Lewin-Koh. 
 * NOTE
 * The subroutines TwoCirclesxx and SubVec are adapted for R and Double
 * precision coordinates by Nicholas Lewin-Koh, from Computational
 * Geometry in C, Joseph O'Rourke, Cambridge University Press
 * (1998). Copyright for those subroutines remains his.
 /
 
 (slightly edited on R-forge to cite the arm/arm.c file)
 
 which we would argue meets the requirements of the copyright holder.
 If you disagree, it may be possible to reproduce the functionality
 using another R package.

I'm not sure about this but id definitely does not sound like GPLv?  For
me this statement does not include any license statement at all.
Thorsten, what do you think?
 
 spdep/R/bptest.sarlm.R seems to be just GPLv2 and not GPLv2+, doesn't it?
 
 From:
 
 http://cran.r-project.org/web/packages/lmtest/index.html
 
 lmtest now is GPL-2 | GPL-3; R source file in spdep updated.
 
 Hope this helps,

Yes, it does to discuss things further.  Thanks a lot
 
 Andreas.

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Index: copyright
===
--- copyright	(Revision 46778)
+++ copyright	(Arbeitskopie)
@@ -94,6 +94,44 @@
 Copyright: 2005 Yongwan Chun, Michael Tiefelsdorf and Roger Bivand
 License: GPL-2+
 
+Files: R/bptest.sarlm.R
+Copyright: 1998 Joseph O'Rourke orou...@cs.smith.edu
+License: freelyredistributable
+ This code may be freely redistributed in its entirety provided that this
+ copyright notice is not removed.
+Remark: The code at:
+ http://cs.smith.edu/~orourke/books/ftp.html
+ http://cs.smith.edu/~orourke/CGCode/SecondEdition/Ccode2.tar.gz
+ .
+ includes arm/arm.c with the affected functions. This file has:
+ .
+ /*
+ This code is described in Computational Geometry in C (Second Edition),
+ Chapter 8.  It is not written to be comprehensible without the
+ explanation in that book.
+ .
+ Prints out one arm configuration to reach given target.
+ Assumes number of links = 3.
+ Input:
+nlinks   Number of links
+L1 L2 ... Ln Link lengths
+x0 y0target0
+x1 x2target1
+...
+ .
+ Written by Joseph O'Rourke.
+ Last modified: December 1997
+ Questions to orou...@cs.smith.edu.
+ */
+
+Files: src/soigraph.c
+Copyright: 2001 Nicholas Lewin-Koh
+License: soigraph
+ The subroutines TwoCirclesxx and SubVec are adapted for R and Double
+ precision coordinates by Nicholas Lewin-Koh, from Computational
+ Geometry in C, Joseph O'Rourke, Cambridge University Press
+ (1998). Copyright for those subroutines remains his.
+
 Files: debian/*
 Copyright: 2014 Andreas Tille ti...@debian.org
 License: GPL-2+
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3depict 0.0.16-2.1 MIGRATED to testing

2014-07-30 Thread Debian testing watch
FYI: The status of the 3depict source package
in Debian's testing distribution has changed.

  Previous version: (not in testing)
  Current version:  0.0.16-2.1

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See https://release.debian.org/testing-watch/ for more information.

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ovito 2.3.3-3 MIGRATED to testing

2014-07-30 Thread Debian testing watch
FYI: The status of the ovito source package
in Debian's testing distribution has changed.

  Previous version: 2.3.3-2
  Current version:  2.3.3-3

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spyder 2.3.0+dfsg-2 MIGRATED to testing

2014-07-30 Thread Debian testing watch
FYI: The status of the spyder source package
in Debian's testing distribution has changed.

  Previous version: 2.2.5+dfsg-1
  Current version:  2.3.0+dfsg-2

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Bug#756480: double-conversion: the package should create and install the *.cmake files

2014-07-30 Thread Sébastien Villemot
Le mercredi 30 juillet 2014 à 10:46 +0200, Gert Wollny a écrit :

 the package is prepared to provide various *.cmake files that can be used by
 third party libraries using cmake to find the required information about the
 location of library files etc. E.g. the Insighttoolkit requires these files.
 
 As far as I can see the package supports two build systems: cmake and scons,
 and to build the package scons is used which doesn't create the *.cmake files.
 The cmake based build system would create these files but doesn't create and
 run the tests.
 (One should probably ask upstream to completely move to cmake).

I am not familiar with CMake, so I may be wrong here, but it looks like
the CMake build system does not create the shared library. So I can't
use it out-of-the-box. Note that the scons build system creates the
shared library, but it's not what you want anyways.

It would take me some time to figure out how to fix this, and I admit
that I have no strong inclination to dig into CMake documentation.
Ideally if you could provide me with a patch to the CMake stuff, I would
surely apply it (I can figure out how to adapt the Debian packaging).
The SONAME has to be libdouble-conversion.so.1.

Cheers,

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Re: Comments from ftpmaster regarding spdep Debian package

2014-07-30 Thread Roger Bivand

Hi Andreas,

This isn't a patch to my spdep/inst/README file. I have no knowledge of 
any debian/copyright file, and cannot take responsibility for that (I 
don't think installing from source is a problem for non-OSX/Windows users; 
I do not use Debian systems, and do not know anything about their 
packaging systems other than very bad experiences with people with messed 
up GIS packages). If you want me to patch anything, diff from 
spdep/inst/README on R-forge. In particular:


 Copyright: 2005 Yongwan Chun, Michael Tiefelsdorf and Roger Bivand
 License: GPL-2+

looks very wrong. The list of contributors is in spdep/DESCRIPTION in R 
standard parsable form;


+Files: R/bptest.sarlm.R
+Copyright: 1998 Joseph O'Rourke orou...@cs.smith.edu

isn't the correct file - should be src/soigraph.c.

I'd be grateful if you'd run any (unneeded) copyright file by me before 
proceeding. If such a file is needed, it should only point to the correct 
file within the R package (otherwise they will get out of sync).


As you can see, the decision of a master is of very little use to me, 
I'll humour your attempts if you do things right, but have no need to see 
spdep distributed in this way - Debian users should IMO always install R 
packages from source to avoid unintended incompatibilities.


Best wishes,

Roger

On Wed, 30 Jul 2014, Andreas Tille wrote:


Hi Roger,

thanks for your very fast response.  I keep our ftpmaster in CC since he
finally needs to decide.  I attached a proposed diff for the
debian/copyright file.

On Wed, Jul 30, 2014 at 05:12:58PM +0200, Roger Bivand wrote:

Hi Andreas,

On Wed, 30 Jul 2014, Andreas Tille wrote:


Hi Roger,

I tried to package spdep for Debian on behalf of the Debian Science team.
The Debian ftpmaster had some issues before he will accept the package.
Could you please clarify the points below.

Thanks a lot and also thanks for providing spdep as free software

Andreas.

- Forwarded message from Thorsten Alteholz 
ftpmas...@ftp-master.debian.org -

Date: Wed, 30 Jul 2014 11:51:55 +
From: Thorsten Alteholz ftpmas...@ftp-master.debian.org
To: Debian Science Team debian-science-maintainers@lists.alioth.debian.org, Andreas 
Tille ti...@debian.org
Cc: Debian FTP Masters ftpmas...@ftp-master.debian.org
Subject: Comments regarding r-cran-spdep_0.5-74-1_amd64.changes

Hi Andreas,

according to spdep/inst/README parts of src/soigraph.c are taken from
a publication of Camebridge University Press. Can you please confirm
that the license is really GPLv2+?



The code at:

http://cs.smith.edu/~orourke/books/ftp.html
http://cs.smith.edu/~orourke/CGCode/SecondEdition/Ccode2.tar.gz

includes arm/arm.c with the affected functions. This file has:

/*
This code is described in Computational Geometry in C (Second Edition),
Chapter 8.  It is not written to be comprehensible without the
explanation in that book.

Prints out one arm configuration to reach given target.
Assumes number of links = 3.
Input:
   nlinks   Number of links
   L1 L2 ... Ln Link lengths
   x0 y0target0
   x1 x2target1
   ...

Written by Joseph O'Rourke.
Last modified: December 1997
Questions to orou...@cs.smith.edu.

This code is Copyright 1998 by Joseph O'Rourke.  It may be freely
redistributed in its entirety provided that this copyright notice is
not removed.

*/


I think this is fine so far.


The file src/soigraph.c has:

/* Copyright 2001 by Nicholas Lewin-Koh. 
* NOTE
* The subroutines TwoCirclesxx and SubVec are adapted for R and Double
* precision coordinates by Nicholas Lewin-Koh, from Computational
* Geometry in C, Joseph O'Rourke, Cambridge University Press
* (1998). Copyright for those subroutines remains his.
/

(slightly edited on R-forge to cite the arm/arm.c file)

which we would argue meets the requirements of the copyright holder.
If you disagree, it may be possible to reproduce the functionality
using another R package.


I'm not sure about this but id definitely does not sound like GPLv?  For
me this statement does not include any license statement at all.
Thorsten, what do you think?


spdep/R/bptest.sarlm.R seems to be just GPLv2 and not GPLv2+, doesn't it?


From:

http://cran.r-project.org/web/packages/lmtest/index.html

lmtest now is GPL-2 | GPL-3; R source file in spdep updated.

Hope this helps,


Yes, it does to discuss things further.  Thanks a lot

Andreas.




--
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Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; fax +47 55 95 91 00
e-mail: roger.biv...@nhh.no


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Re: Comments from ftpmaster regarding spdep Debian package

2014-07-30 Thread Andreas Tille
Hi Roger,

On Wed, Jul 30, 2014 at 09:36:22PM +0200, Roger Bivand wrote:
 Hi Andreas,
 
 This isn't a patch to my spdep/inst/README file.

No, it's not! :-)

 I have no knowledge
 of any debian/copyright file, and cannot take responsibility for
 that

This was never intended - it was just for our ftpmasters because its
their responsibility to verify the copyright + license of each file we
want to upload.  Sorry if this was confusing.

 (I don't think installing from source is a problem for
 non-OSX/Windows users; I do not use Debian systems, and do not know
 anything about their packaging systems other than very bad
 experiences with people with messed up GIS packages). If you want me
 to patch anything, diff from spdep/inst/README on R-forge. In
 particular:
 
  Copyright: 2005 Yongwan Chun, Michael Tiefelsdorf and Roger Bivand
  License: GPL-2+
 
 looks very wrong.

Well, the line above this was

  Files: R/SpatialFiltering.R

in front of the Copyright/License paragraph.  We need to list all
explicite Copyright statement inside the code.  I can not see in how far
this should be in conflict with your spdep/DESCRIPTION file.

 The list of contributors is in spdep/DESCRIPTION
 in R standard parsable form;
 
 +Files: R/bptest.sarlm.R
 +Copyright: 1998 Joseph O'Rourke orou...@cs.smith.edu
 
 isn't the correct file - should be src/soigraph.c.

Uhhmmm, perhaps I misinterpretet your first answer.  We have to
troublesome files.  Would you please consider reading the original mail
here:

   
http://lists.alioth.debian.org/pipermail/debian-science-maintainers/2014-July/026470.html
 
 I'd be grateful if you'd run any (unneeded) copyright file by me
 before proceeding.

I hope not to do any unneeded work.  The Debian copyright file is
required for any Debian package and you can have a look here:

   
http://anonscm.debian.org/viewvc/debian-science/packages/R/r-cran-spdep/trunk/debian/copyright?view=markup

I'd be more than happy if you could clarify the open issues for the
two files

   src/soigraph.c
   R/bptest.sarlm.R

in a format like this.

 If such a file is needed, it should only point to
 the correct file within the R package (otherwise they will get out
 of sync).

Since we are packaging more than R packages in Debian we can not drop
this general requirement and we need to stick to the given format.  I
agree that keeping these files in sync is a bit troublesome but I have
no choice but providing such a file (which works for 500 R packages
in Debian).
 
 As you can see, the decision of a master is of very little use

s/master/ftpmaster/ = the gate keeper of the Debian package pool.

 to me, I'll humour your attempts if you do things right, but have no
 need to see spdep distributed in this way - Debian users should IMO
 always install R packages from source to avoid unintended
 incompatibilities.

The rationale why I intend to package spdep is that we have a certain
set of R packages packaged for Debian for very good reasons and now it
turned out that spdep is used as a new dependency to run a test suite of
some other packages.  To make sure we will not have any
incompatibilities we really want to run the test suite - thus I need to
provide a spdep Debian package.  I'm aware that there are people who
consider Debian packages of R packages useless but as you probably also
know there are varying opinions about this and I'm just doing it as
a service request of some users (and not because I have no better clue
how to spend my spare time ;-)).

 Best wishes,

Same to you and sorry for the confusion I might have created

   Andreas.

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Bug#755227: Update patch

2014-07-30 Thread Alexander
Source: eclib
Severity: minor
Tags: patch
Followup-For: Bug #755227
User: pkg-llvm-t...@lists.alioth.debian.org
Usertags: clang-ftbfs

Hi,

Please see new patch in the attach. First version of the patch has been created 
in the wrong way.

Thanks,
Alexander


-- System Information:
Debian Release: jessie/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 3.2.0-4-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
--- ./libsrc/eclib/smat.h	2014-05-15 15:12:49.0 +0400
+++ ../eclib-2014-05-14a-my/./libsrc/eclib/smat.h	2014-07-31 01:28:09.037375213 +0400
@@ -23,6 +23,9 @@
  
 // Original version by Luiz Figueiredo
 
+int eqmodp(const smat, const smat, const scalar p=DEFAULT_MODULUS);
+int liftmat(const smat mm, scalar pr, smat m, scalar dd, int trace=0);
+
 class smat {
 
 friend class smat_elim;
@@ -79,7 +82,7 @@
  friend smat transpose(const smat);
  friend int operator==(const smat, const smat);
   // Equality mod p:
- friend int eqmodp(const smat, const smat, const scalar p=DEFAULT_MODULUS);
+ friend int eqmodp(const smat, const smat, const scalar p);
  friend ostream operator (ostreams, const smat);
  friend istream operator (istreams, smat);
  friend int get_population (const smat );  //mainly used for testing
@@ -87,7 +90,7 @@
  {return (((double)(get_population(m)))/m.nro)/m.nco;}
  friend void random_fill_in( smat, int, scalar ); //the elimination program
  friend smat sidmat(scalar);  // identity matrix
- friend int liftmat(const smat mm, scalar pr, smat m, scalar dd, int trace=0);
+ friend int liftmat(const smat mm, scalar pr, smat m, scalar dd, int trace);
  friend int liftmats_chinese(const smat mm1, scalar pr1, const smat mm2, scalar pr2,
  smat m, scalar dd);
  };
--- ./libsrc/eclib/mat.h	2014-05-15 15:12:49.0 +0400
+++ ../eclib-2014-05-14a-my/./libsrc/eclib/mat.h	2014-07-31 01:25:26.976901882 +0400
@@ -32,6 +32,9 @@
 #define INT_MIN (-INT_MAX-1)
 #endif
 
+int liftmat(const mat mm, scalar pr, mat m, scalar dd, int trace=0);
+int lift(const subspace s, scalar pr, subspace ans, int trace=0);
+
 class mat {
 friend class subspace;
 friend class mat_m;
@@ -103,8 +106,8 @@
  long rk, long ny, scalar pr);
 	friend subspace combine(const subspace s1, const subspace s2);
 friend mat restrict_mat(const mat m, const subspace s, int cr);
-friend int liftmat(const mat mm, scalar pr, mat m, scalar dd, int trace=0);
-friend int lift(const subspace s, scalar pr, subspace ans, int trace=0);
+friend int liftmat(const mat mm, scalar pr, mat m, scalar dd, int trace);
+friend int lift(const subspace s, scalar pr, subspace ans, int trace);
 	friend subspace pcombine(const subspace s1, const subspace s2, scalar pr);
 	friend mat prestrict(const mat m, const subspace s, scalar pr, int cr);
 	friend mat matmulmodp(const mat, const mat, scalar pr);
--- ./libsrc/eclib/p2points.h	2014-05-15 15:12:49.0 +0400
+++ ../eclib-2014-05-14a-my/./libsrc/eclib/p2points.h	2014-07-31 01:30:04.843045951 +0400
@@ -30,6 +30,16 @@
 //
 // class for  points in P^2(Q), used as base for points on elliptic curves etc.
 //
+class P2Point;
+P2Point scale(const P2Point P, const bigint u, int back=0); 
+P2Point scale(const P2Point P, long u=1, int back=0); 
+P2Point shift(const P2Point P,
+  const bigint r, const bigint s, const bigint t, 
+  int back=0); 
+P2Point transform(const P2Point P,
+			   const bigint u, 
+			   const bigint r, const bigint s, const bigint t, 
+			   int back=0); 
 
 class P2Point{ 
   friend class Point;
@@ -100,15 +110,15 @@
 { X=Q.X ; Y=Q.Y; Z=Q.Z;  }
 
   // Coordinate transforms useful for elliptic curve points 
-  friend P2Point scale(const P2Point P, const bigint u, int back=0); 
-  friend P2Point scale(const P2Point P, long u=1, int back=0); 
+  friend P2Point scale(const P2Point P, const bigint u, int back); 
+  friend P2Point scale(const P2Point P, long u, int back); 
   friend P2Point shift(const P2Point P,
 		   const bigint r, const bigint s, const bigint t, 
-		   int back=0); 
+		   int back); 
   friend P2Point transform(const P2Point P,
 			   const bigint u, 
 			   const bigint r, const bigint s, const bigint t, 
-			   int back=0); 
+			   int back); 
 
   void getcoordinates(bigint x, bigint y, bigint z) const
 {x=X; y=Y; z=Z; }
--- ./libsrc/eclib/mmatrix.h	2014-05-15 15:12:49.0 +0400
+++ ../eclib-2014-05-14a-my/./libsrc/eclib/mmatrix.h	2014-07-31 01:26:09.24774 +0400
@@ -27,6 +27,8 @@
 #include mvector.h
 #include matrix.h
 
+msubspace lift(const msubspace s, const bigint pr, int =0);
+
 class mat_m {
 friend class msubspace;
 public:
@@ -84,7 +86,7 @@
   long rk, long ny, 

I am contacting you regarding our company urgent need for (Gizito oil Liquid) a raw material I found in India recently.

2014-07-30 Thread DR.JONATHAN BUTTLER



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Awaiting your reply. 
With best wishes 

Thanks 
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Processing of arduino-mk_1.3.4-1_i386.changes

2014-07-30 Thread Debian FTP Masters
arduino-mk_1.3.4-1_i386.changes uploaded successfully to localhost
along with the files:
  arduino-mk_1.3.4-1_all.deb
  arduino-mk_1.3.4-1.dsc
  arduino-mk_1.3.4.orig.tar.gz
  arduino-mk_1.3.4-1.debian.tar.xz

Greetings,

Your Debian queue daemon (running on host franck.debian.org)

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